Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 1.3e-231 806.2 446 100.0
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 6.4e-220 767.3 450 90.2
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 5.7e-208 727.6 450 82.4
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 2.4e-206 722.2 448 84.8
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 2.5e-200 702.2 443 83.3
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 2.2e-199 699.1 443 81.3
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 2.4e-190 669.1 443 77.0
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 2.0e-189 666.0 450 76.0
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 2.5e-187 659.1 448 76.6
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 1.2e-186 656.8 448 77.9
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 1.2e-186 656.8 448 77.9
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 2.0e-181 639.4 444 75.5
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 8.0e-178 627.5 443 74.9
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 1.2e-168 597.0 444 69.1
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 5.9e-165 584.7 444 67.8
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 1.5e-160 570.1 446 67.3
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 2.2e-159 566.2 444 66.0
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 4.9e-159 565.1 445 66.1
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 6.3e-159 564.7 444 66.0
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 8.3e-159 564.3 444 66.0
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 8.3e-159 564.3 444 65.8
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 1.8e-158 563.1 444 65.8
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 1.8e-158 563.1 444 65.8
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 1.2e-154 550.4 447 64.7
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 2.6e-152 542.7 439 65.1
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 3.9e-148 528.9 448 62.7
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 5.0e-148 528.5 393 67.2
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 1.6e-130 470.3 403 61.0
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 2.6e-128 463.0 401 60.6
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 3.4e-128 462.6 405 61.7
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 7.6e-128 461.5 400 61.0
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 6.4e-127 458.4 397 58.7
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 1.9e-126 456.8 400 59.5
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 5.4e-126 455.3 397 58.2
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 1.2e-125 454.1 398 58.0
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 4.6e-125 452.2 444 54.7
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.0e-124 451.1 444 54.7
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 1.0e-124 451.1 395 59.0
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 1.3e-124 450.7 395 60.0
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 1.3e-124 450.7 397 58.2
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 2.3e-124 449.9 457 54.3
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 3.9e-124 449.1 403 58.8
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 5.1e-124 448.7 398 61.1
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 5.1e-124 448.7 403 59.1
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 6.6e-124 448.4 396 60.1
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 1.1e-123 447.6 392 60.7
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.5e-123 446.4 452 53.1
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 7.3e-123 444.9 403 58.3
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 7.3e-123 444.9 394 59.1
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 2.8e-122 443.0 400 58.0
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 2.8e-122 443.0 396 59.6
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.4e-121 440.7 393 58.3
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 6.9e-121 438.3 398 58.0
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 1.5e-120 437.2 399 56.6
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 1.7e-119 433.7 405 56.8
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 2.2e-119 433.3 399 56.9
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 2.2e-119 433.3 397 57.2
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 3.8e-119 432.6 397 57.7
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 3.8e-119 432.6 404 57.4
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 9.3e-118 427.9 448 52.9
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 2.1e-117 426.8 393 57.0
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 2.7e-117 426.4 403 55.8
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 3.5e-117 426.0 451 51.9
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 3.9e-116 422.5 398 55.8
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 1.5e-115 420.6 404 55.0
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 3.3e-115 419.5 413 55.2
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 1.5e-112 410.6 374 57.8
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 2.6e-112 409.8 400 53.5
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 4.9e-111 405.6 397 55.4
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 6.4e-111 405.2 390 55.9
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 1.1e-107 394.4 394 53.3
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 1.1e-107 394.4 399 52.6
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 1.9e-107 393.7 397 52.4
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 2.5e-107 393.3 397 52.4
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 1.6e-106 390.6 398 51.5
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 6.2e-106 388.7 407 53.3
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 6.9e-105 385.2 393 51.7
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 2.6e-104 383.3 394 51.0
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 1.3e-103 380.9 389 52.2
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 1.3e-103 380.9 400 51.5
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 3.8e-103 379.4 447 48.3
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 4.9e-103 379.0 382 52.9
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 6.4e-103 378.6 383 52.5
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 5.5e-102 375.6 457 49.0
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 7.1e-102 375.2 445 47.9
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.6e-101 374.0 457 48.8
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 6.0e-101 372.1 332 58.7
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 1.0e-100 371.3 415 48.4
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 3.3e-99 366.3 397 51.6
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 5.7e-99 365.5 400 49.5
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 3.7e-98 362.8 399 49.6
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 6.2e-98 362.1 389 50.4
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 1.1e-97 361.3 346 56.1
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 4.0e-97 359.4 389 50.1
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 9.0e-97 358.2 396 50.5
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 5.8e-96 355.5 384 52.9
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 5.8e-96 355.5 396 48.5
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 5.1e-92 342.4 400 46.5
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 2.6e-88 330.1 352 51.7
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 3.8e-87 326.2 403 47.1
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 1.4e-84 317.8 269 61.3
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 5.1e-84 315.8 350 50.9
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 3.7e-82 309.7 370 47.8
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 2.9e-79 300.1 400 46.8
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 8.8e-76 288.5 399 43.9
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 1.1e-75 288.1 306 49.7
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 2.6e-72 276.9 402 41.0
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 3.8e-71 273.1 342 48.0
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 2.7e-69 266.9 330 48.5
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 5.9e-64 249.2 255 54.9
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 8.5e-63 245.4 369 39.6
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 4.7e-61 239.6 166 65.7
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 4.0e-60 236.5 395 38.0
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 4.1e-57 226.5 233 54.1
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 1.2e-56 224.9 252 51.2
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 4.5e-56 223.0 201 53.7
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 3.8e-55 219.9 412 41.3
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 1.6e-53 214.5 390 35.6
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 3.4e-51 206.8 394 34.8
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 6.3e-50 202.6 394 37.1
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 9.8e-43 178.7 395 34.4
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 3.6e-21 107.1 207 33.3
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 3.1e-20 104.0 200 33.5
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 7.1e-17 92.8 70 61.4
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 3.5e-16 90.5 156 32.7
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 1.2e-13 82.0 173 30.1
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 1.2e-11 75.5 110 46.4
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 3.4e-11 73.9 156 31.4
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 1.3e-07 62.0 72 48.6


User provided reference genes

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