Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G14470 Arabidopsis lyrata HOM05D000329 ORTHO05D005330 0.0e+00 2233.4 1143 100.0
AT3G04490 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 0.0e+00 2179.4 1143 97.5
Carub.0003s0365 Capsella rubella HOM05D000329 ORTHO05D005330 0.0e+00 2167.9 1143 97.2
Sp3g03340 Schrenkiella parvula HOM05D000329 ORTHO05D005330 0.0e+00 2107.0 1144 94.1
BolC5t34929H Brassica oleracea HOM05D000329 ORTHO05D005330 0.0e+00 2097.4 1144 93.1
C05p62760 Brassica napus HOM05D000329 ORTHO05D005330 0.0e+00 2095.1 1144 92.9
A05p42990 Brassica napus HOM05D000329 ORTHO05D005330 0.0e+00 2093.2 1144 93.0
BraA05t23043Z Brassica rapa HOM05D000329 ORTHO05D005330 0.0e+00 2085.5 1157 92.0
BcaC05g30221 Brassica carinata HOM05D000329 ORTHO05D005330 0.0e+00 2078.5 1144 92.4
Aa31LG5G14930 Aethionema arabicum HOM05D000329 ORTHO05D005330 0.0e+00 2001.5 1159 88.0
Thhalv10019943m.g Eutrema salsugineum HOM05D000329 ORTHO05D005330 0.0e+00 1987.2 1144 89.7
THA.LOC104827286 Tarenaya hassleriana HOM05D000329 ORTHO05D005330 0.0e+00 1965.7 1144 87.3
BcaC05g30194 Brassica carinata HOM05D000329 ORTHO05D005330 0.0e+00 1947.2 1154 87.9
BcaC05g29938 Brassica carinata HOM05D000329 ORTHO05D005330 0.0e+00 1874.8 1145 86.0
CARHR078650 Cardamine hirsuta HOM05D000329 ORTHO05D005330 0.0e+00 1707.2 928 94.5
Manes.09G147900 Manihot esculenta HOM05D000329 ORTHO05D005330 0.0e+00 1684.8 1150 74.3
Thecc.05G271000 Theobroma cacao HOM05D000329 ORTHO05D005330 0.0e+00 1669.1 1148 74.0
COL.COLO4_15478 Corchorus olitorius HOM05D000329 ORTHO05D005330 0.0e+00 1664.8 1152 73.8
Gohir.A08G217300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 0.0e+00 1651.3 1147 73.7
Ciclev10018568m.g Citrus clementina HOM05D000329 ORTHO05D005330 0.0e+00 1647.9 1152 72.0
Atru.chr2.977 Acer truncatum HOM05D000329 ORTHO05D005330 0.0e+00 1647.5 1151 72.8
Duzib177G0982 Durio zibethinus HOM05D000329 ORTHO05D005330 0.0e+00 1645.2 1148 73.3
Gorai.004G249100 Gossypium raimondii HOM05D000329 ORTHO05D005330 0.0e+00 1644.4 1147 73.3
Duzib106G0267 Durio zibethinus HOM05D000329 ORTHO05D005330 0.0e+00 1640.9 1149 72.8
GSVIVG01023507001 Vitis vinifera HOM05D000329 ORTHO05D005330 0.0e+00 1612.0 1154 71.0
TWI56G0006 Tripterygium wilfordii HOM05D000329 ORTHO05D005330 0.0e+00 1602.4 1150 70.4
Potri.019G019100 Populus trichocarpa HOM05D000329 ORTHO05D005330 0.0e+00 1601.3 1148 71.0
Cfa006349 Carpinus fangiana HOM05D000329 ORTHO05D005330 0.0e+00 1594.7 1150 70.9
Actinidia39997 Actinidia chinensis HOM05D000329 ORTHO05D005330 0.0e+00 1592.0 1158 69.8
MD04G1230100 Malus domestica HOM05D000329 ORTHO05D005330 0.0e+00 1590.9 1142 70.3
CiPaw.08G118500 Carya illinoinensis HOM05D000329 ORTHO05D005330 0.0e+00 1575.1 1136 70.1
Ca_09463_v3 Cicer arietinum L. HOM05D000329 ORTHO05D005330 0.0e+00 1570.8 1148 69.2
Glyma.03G251100 Glycine max HOM05D000329 ORTHO05D005330 0.0e+00 1570.1 1147 68.4
CANSAT54G2567 Cannabis sativa HOM05D000329 ORTHO05D005330 0.0e+00 1567.7 1145 69.3
TAR636G0200 Trochodendron aralioides HOM05D000329 ORTHO05D005330 0.0e+00 1564.3 1153 69.0
Sabra19G0031800 Salix brachista HOM05D000329 ORTHO05D005330 0.0e+00 1560.4 1198 67.8
FvH4_6g01900 Fragaria vesca HOM05D000329 ORTHO05D005330 0.0e+00 1560.0 1142 69.5
FAN05G0322 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1559.3 1142 69.4
Atru.chr2.952 Acer truncatum HOM05D000329 ORTHO05D005330 0.0e+00 1558.5 1099 72.2
Lj1g0020261 Lotus japonicus HOM05D000329 ORTHO05D005330 0.0e+00 1558.5 1147 68.6
arahy.Tifrunner.gnm1.ann1.LXR25M Arachis hypogaea HOM05D000329 ORTHO05D005330 0.0e+00 1557.7 1147 69.1
RcHm_v2.0_Chr3g0449631 Rosa chinensis HOM05D000329 ORTHO05D005330 0.0e+00 1557.0 1142 69.8
TPR.G6911 Trifolium pratense HOM05D000329 ORTHO05D005330 0.0e+00 1556.6 1147 68.9
Gohir.D08G234300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 0.0e+00 1549.6 1147 70.2
FAN09G2051 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1543.5 1173 67.7
Phvul.006G105600 Phaseolus vulgaris HOM05D000329 ORTHO05D005330 0.0e+00 1543.1 1147 67.7
PGR004G1157 Punica granatum HOM05D000329 ORTHO05D005330 0.0e+00 1541.2 1152 67.2
FAN14G5238 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1540.4 1173 67.5
Lalb_Chr18g0044041 Lupinus albus HOM05D000329 ORTHO05D005330 0.0e+00 1536.9 1149 67.4
Cc02_g08850 Coffea canephora HOM05D000329 ORTHO05D005330 0.0e+00 1531.5 1154 67.2
Nn1g02807 Nelumbo nucifera HOM05D000329 ORTHO05D005330 0.0e+00 1505.7 1151 66.1
MSTRG.316 Avicennia marina HOM05D000329 ORTHO05D005330 0.0e+00 1503.4 1153 65.4
Lj2C42G9 Lonicera japonica HOM05D000329 ORTHO05D005330 0.0e+00 1498.4 1153 66.9
Prupe.7G018700 Prunus persica HOM05D000329 ORTHO05D005330 0.0e+00 1497.3 1142 67.3
Peaxi162Scf00304g10137 Petunia axillaris HOM05D000329 ORTHO05D005330 0.0e+00 1495.3 1144 65.8
MELO3C010156.2 Cucumis melo HOM05D000329 ORTHO05D005330 0.0e+00 1494.6 1151 66.2
Medtr7g115710 Medicago truncatula HOM05D000329 ORTHO05D005330 0.0e+00 1486.1 1105 68.2
PSO063G2047 Papaver somniferum HOM05D000329 ORTHO05D005330 0.0e+00 1485.3 1153 65.4
SGA_v2.0_scaffold50G18503 Striga asiatica HOM05D000329 ORTHO05D005330 0.0e+00 1482.6 1200 63.2
CsaV3_1G045290 Cucumis sativus L. HOM05D000329 ORTHO05D005330 0.0e+00 1479.2 1136 66.4
Dinv06015 Davidia involucrata HOM05D000329 ORTHO05D005330 0.0e+00 1475.7 1048 71.0
AUR62004837 Chenopodium quinoa HOM05D000329 ORTHO05D005330 0.0e+00 1475.3 1149 65.7
Oeu014525.1 Olea europaea HOM05D000329 ORTHO05D005330 0.0e+00 1472.2 1155 64.8
Ah.06g191840 Amaranthus hybridus HOM05D000329 ORTHO05D005330 0.0e+00 1471.8 1143 65.4
Psat3g006480 Pisum sativum HOM05D000329 ORTHO05D005330 0.0e+00 1471.8 1087 68.2
PSO017G0764 Papaver somniferum HOM05D000329 ORTHO05D005330 0.0e+00 1468.4 1152 64.9
FAN14G2464 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1465.7 1188 64.6
Migut.F01542 Erythranthe guttata HOM05D000329 ORTHO05D005330 0.0e+00 1459.5 1151 63.3
vmacro19990 Vaccinium macrocarpon HOM05D000329 ORTHO05D005330 0.0e+00 1458.0 1272 61.2
Lsat_1_v5_gn_2_16061 Lactuca sativa HOM05D000329 ORTHO05D005330 0.0e+00 1448.0 1146 64.3
CSS0019027 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 0.0e+00 1445.3 1108 67.7
Glyma.19G248400 Glycine max HOM05D000329 ORTHO05D005330 0.0e+00 1445.3 1063 68.2
HanXRQChr13g0397671 Helianthus annuus HOM05D000329 ORTHO05D005330 0.0e+00 1440.6 1146 64.0
FAN05G4177 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1440.2 1106 67.4
ECA238G1533 Erigeron canadensis HOM05D000329 ORTHO05D005330 0.0e+00 1432.9 1146 63.4
Aqoxy2G03671 Aquilegia oxysepala HOM05D000329 ORTHO05D005330 0.0e+00 1422.1 1149 63.6
AUR62040926 Chenopodium quinoa HOM05D000329 ORTHO05D005330 0.0e+00 1410.2 1149 64.0
Sopen12g010860 Solanum pennellii HOM05D000329 ORTHO05D005330 0.0e+00 1406.7 1070 65.9
EL10Ac4g09016 Beta vulgaris HOM05D000329 ORTHO05D005330 0.0e+00 1356.7 1148 62.6
ATR0736G139 Amborella trichopoda HOM05D000329 ORTHO05D005330 0.0e+00 1340.5 1157 60.1
Sc09g0004230 Simmondsia chinensis HOM05D000329 ORTHO05D005330 0.0e+00 1329.7 995 67.7
Zm00001eb045870 Zea mays HOM05D000329 ORTHO05D005330 0.0e+00 1180.6 1156 53.6
Os10g0477000 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D005330 0.0e+00 1169.8 1157 53.9
CSS0000359 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 0.0e+00 1152.5 857 69.0
Mapoly0091s0014 Marchantia polymorpha HOM05D000329 ORTHO05D005330 0.0e+00 1109.7 1173 51.1
Pp3c6_27570 Physcomitrium patens HOM05D000329 ORTHO05D005330 0.0e+00 1097.0 1173 50.6
Eucgr.H04230 Eucalyptus grandis HOM05D000329 ORTHO05D005330 4.5e-302 1041.6 790 68.0
AagrBONN_evm.TU.Sc2ySwM_228.3774 Anthoceros agrestis HOM05D000329 ORTHO05D005330 1.7e-301 1039.6 1111 50.3
Sed0007400 Sechium edule HOM05D000329 ORTHO05D005330 1.0e-298 1030.4 826 63.9
Solyc12g027580.3 Solanum lycopersicum HOM05D000329 ORTHO05D005330 5.9e-294 1014.6 774 67.3
Cpa.g.sc162.46 Carica papaya HOM05D000329 ORTHO05D005330 2.3e-290 1002.7 715 73.1
QL03p030482 Quercus lobata HOM05D000329 ORTHO05D005330 1.2e-270 937.2 696 68.2
SMO356G0150 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 1.2e-265 920.6 1166 44.6
unitig_46.g18343 Utricularia gibba HOM05D000329 ORTHO05D005330 1.4e-263 913.7 1205 45.7
VMungo0540G0180 Vigna mungo HOM05D000329 ORTHO05D005330 7.9e-246 854.7 623 69.0
CBR_g8586 Chara braunii HOM05D000329 ORTHO05D005330 6.9e-242 841.6 1201 40.6
HPP92_025585 Vanilla planifolia HOM05D000329 ORTHO05D005330 2.9e-200 703.4 825 48.4
QL03p030502 Quercus lobata HOM05D000329 ORTHO05D005330 7.2e-199 698.7 462 76.0
DCAR_000979 Daucus carota HOM05D000329 ORTHO05D005330 1.1e-183 648.3 526 63.9
SMO002G0004 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 8.9e-181 638.6 1141 36.5
Hma1.2p1_1512F.1_g287930 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 2.9e-179 633.6 441 72.1
ClCG06G009520 Citrullus lanatus HOM05D000329 ORTHO05D005330 3.0e-168 597.0 445 68.3
SalBow6G5354 Salvia bowleyana HOM05D000329 ORTHO05D005330 1.5e-167 594.7 439 67.0
Pp3c16_19950 Physcomitrium patens HOM05D000329 ORTHO05D005330 5.1e-160 569.7 818 41.7
Pp3c16_19964 Physcomitrium patens HOM05D000329 ORTHO05D005330 5.1e-160 569.7 818 41.7
Hma1.2p1_1512F.1_g287950 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 8.9e-157 558.9 478 61.7
Nitab4.5_0003285g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 8.4e-155 552.4 511 58.7
Nitab4.5_0000432g0100 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.1e-143 515.4 461 58.1
Cpa.g.sc162.43 Carica papaya HOM05D000329 ORTHO05D005330 4.2e-138 496.9 335 70.1
CAN.G155.4 Capsicum annuum HOM05D000329 ORTHO05D005330 2.3e-128 464.5 333 69.4
CDE08G1568 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 1.3e-126 458.8 452 55.3
DCAR_000980 Daucus carota HOM05D000329 ORTHO05D005330 2.1e-126 458.0 410 60.7
Nitab4.5_0003285g0070 Nicotiana tabacum HOM05D000329 ORTHO05D005330 3.2e-114 417.5 331 63.7
Haze_04432 Corylus avellana HOM05D000329 ORTHO05D005330 5.7e-111 406.8 314 67.2
Haze_04433 Corylus avellana HOM05D000329 ORTHO05D005330 1.6e-110 405.2 275 75.6
CDE08G1167 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 1.1e-106 392.5 582 41.4
Sabra19G0028500 Salix brachista HOM05D000329 ORTHO05D000833 9.4e-106 389.4 267 73.0
ClCG06G009480 Citrullus lanatus HOM05D000329 ORTHO05D005330 3.5e-92 344.4 392 50.3
Nitab4.5_0000432g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.1e-90 339.3 253 66.8
arahy.Tifrunner.gnm1.ann1.I5XT77 Arachis hypogaea HOM05D000329 ORTHO05D005330 1.0e-88 332.8 253 66.8
MBI10_g44932_MAGBIO Magnolia biondii HOM05D000329 ORTHO05D005330 2.0e-84 318.5 442 44.8
HPP92_025571 Vanilla planifolia HOM05D000329 ORTHO05D005330 2.1e-81 308.5 326 50.9
Hma1.2p1_3491F.1_g336370 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 1.3e-78 299.3 213 63.8
Nitab4.5_0003285g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 4.8e-78 297.4 263 58.9
Nitab4.5_0000432g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 5.9e-76 290.4 222 64.0
Haze_04431 Corylus avellana HOM05D000329 ORTHO05D005330 1.6e-68 265.8 200 70.5
ClCG06G009470 Citrullus lanatus HOM05D000329 ORTHO05D005330 2.7e-68 265.0 194 64.9
SEGI_29711 Sequoiadendron giganteum HOM05D000329 ORTHO05D005330 1.3e-67 262.7 258 53.9
Rhsim10G0071500 Rhododendron simsii HOM05D000329 ORTHO05D005330 5.0e-67 260.8 387 41.9
Cre09.g404350 Chlamydomonas reinhardtii HOM05D000329 ORTHO05D005330 2.1e-65 255.4 1081 25.4
Hma1.2p1_3491F.1_g336380 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 2.1e-65 255.4 227 59.5
Haze_04430 Corylus avellana HOM05D000329 ORTHO05D005330 1.8e-64 252.3 178 66.3
HPP92_025621 Vanilla planifolia HOM05D000329 ORTHO05D005330 9.8e-63 246.5 259 51.4
QL93p0164_0019 Quercus lobata HOM05D000329 ORTHO05D005330 2.7e-60 238.4 172 64.5
HanXRQChr14g0434591 Helianthus annuus HOM05D000329 ORTHO05D005330 1.5e-55 222.6 178 60.7
Nitab4.5_0000432g0110 Nicotiana tabacum HOM05D000329 ORTHO05D005330 2.6e-55 221.9 153 72.5
Sed0005472 Sechium edule HOM05D000329 ORTHO05D005330 9.2e-53 213.4 210 54.8
BcaB04g19325 Brassica carinata HOM05D000329 ORTHO05D005330 1.3e-51 209.5 174 65.5
QL04p089247 Quercus lobata HOM05D000176 ORTHO05D000106 3.0e-51 208.4 176 59.7
QL05p031734 Quercus lobata HOM05D000176 ORTHO05D000106 3.0e-51 208.4 176 59.7
Rhsim05G0128300 Rhododendron simsii HOM05D000329 ORTHO05D005330 6.8e-48 197.2 473 34.2
Nitab4.5_0025717g0010 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.5e-47 196.1 243 47.7
AT4G38092 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 2.4e-45 188.7 103 90.3
PRCOL_00003022 Prasinoderma coloniale HOM05D000329 ORTHO05D005330 5.6e-42 177.6 1207 22.2
Cpa.g.sc162.42 Carica papaya HOM05D000329 ORTHO05D028196 1.8e-24 119.4 78 78.2
SHI23197 Sapria himalayana HOM05D000329 ORTHO05D005330 2.4e-24 119.0 135 42.2
Solyc12g027560.1 Solanum lycopersicum HOM05D000329 ORTHO05D005330 9.0e-24 117.1 79 69.6
Haze_05933 Corylus avellana HOM05D000329 ORTHO05D005330 1.2e-23 116.7 83 71.1
ClCG06G009450 Citrullus lanatus HOM05D000329 ORTHO05D005330 2.0e-23 115.9 85 72.9
Rhsim10G0071600 Rhododendron simsii HOM05D000329 ORTHO05D005330 2.6e-23 115.5 82 68.3
COL.COLO4_15480 Corchorus olitorius HOM05D000329 ORTHO05D005330 3.4e-23 115.2 110 57.3
Haze_04429 Corylus avellana HOM05D000329 ORTHO05D005330 1.1e-21 110.2 69 78.3
SHI23201 Sapria himalayana HOM05D000329 ORTHO05D005330 4.8e-17 94.7 83 56.6
SHI23198 Sapria himalayana HOM05D005377 ORTHO05D003034 6.9e-16 90.9 125 39.2
SEGI_11781 Sequoiadendron giganteum HOM05D000329 ORTHO05D005330 9.0e-16 90.5 76 61.8
Sed0009230 Sechium edule HOM05D000329 ORTHO05D028196 2.6e-15 89.0 56 78.6
SHI23206 Sapria himalayana HOM05D000329 ORTHO05D005330 4.9e-14 84.7 75 60.0
Cfa012903 Carpinus fangiana HOM05D000329 ORTHO05D005330 7.1e-13 80.9 80 53.8
Lsat_1_v5_gn_7_52080 Lactuca sativa HOM05D001785 ORTHO05D001150 7.1e-13 80.9 46 82.6
MapolyY_B0019 Marchantia polymorpha HOM05D003429 ORTHO05D003873 4.6e-12 78.2 485 23.7
AT3G05035 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 5.1e-11 74.7 39 92.3
Actinidia17975 Actinidia chinensis HOM05D003429 ORTHO05D003873 1.9e-10 72.8 757 20.1
Actinidia37867 Actinidia chinensis HOM05D003429 ORTHO05D003873 3.3e-10 72.0 755 20.4
RhsimUnG0020700 Rhododendron simsii HOM05D003429 ORTHO05D003873 3.3e-10 72.0 747 21.6
Mapoly0017s0001 Marchantia polymorpha HOM05D003429 ORTHO05D003873 5.6e-10 71.2 494 22.5
Lsat_1_v5_gn_0_32021 Lactuca sativa HOM05D000147 ORTHO05D013131 9.6e-10 70.5 95 42.1
BraA01t03057Z Brassica rapa HOM05D000329 ORTHO05D028196 6.2e-09 67.8 40 82.5
A06p19390 Brassica napus HOM05D000329 ORTHO05D028196 1.4e-08 66.6 40 80.0
CSS0009838 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 3.1e-08 65.5 679 20.3
Lsat_1_v5_gn_8_51680 Lactuca sativa HOM05D000144 ORTHO05D005330 4.0e-08 65.1 74 48.6
Pp3c5_25430 Physcomitrium patens HOM05D003429 ORTHO05D003873 4.0e-08 65.1 515 21.9
Pp3c5_25610 Physcomitrium patens HOM05D003429 ORTHO05D003873 4.0e-08 65.1 515 21.9
Lsat_1_v5_gn_2_33241 Lactuca sativa HOM05D000329 ORTHO05D005330 6.9e-08 64.3 129 34.9
Lsat_1_v5_gn_7_55340 Lactuca sativa HOM05D000144 ORTHO05D005330 1.5e-07 63.2 74 47.3
CDE07G0955 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 5.8e-07 61.2 360 23.9
Atru.chr12.1194 Acer truncatum HOM05D003429 ORTHO05D003873 1.0e-06 60.5 605 21.2
SHI23202 Sapria himalayana HOM05D000329 ORTHO05D005330 6.5e-06 57.8 75 45.3
Os03g0616700 Oryza sativa ssp. japonica HOM05D003429 ORTHO05D003873 8.4e-06 57.4 576 21.0


User provided reference genes

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