Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 1.3e-138 496.5 268 100.0
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 4.0e-116 421.8 270 87.0
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 3.0e-111 405.6 269 84.4
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 8.3e-106 387.5 274 81.0
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 2.0e-91 339.7 280 73.6
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 4.4e-91 338.6 279 72.4
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.7e-74 283.5 291 63.2
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 4.9e-74 282.0 282 67.0
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 1.4e-73 280.4 282 66.7
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 1.4e-73 280.4 282 66.7
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 1.6e-72 276.9 282 66.0
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 2.3e-71 273.1 282 65.6
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 8.4e-66 254.6 287 62.4
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 4.4e-30 136.0 245 40.8
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 1.7e-29 134.0 185 48.1
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 3.1e-28 129.8 212 41.0
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 4.1e-28 129.4 198 47.0
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 5.3e-28 129.0 250 40.0
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 9.1e-28 128.3 200 46.0
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 9.1e-28 128.3 200 46.0
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 1.6e-27 127.5 208 43.3
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 7.7e-27 125.2 261 36.8
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 1.7e-26 124.0 260 40.8
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 1.7e-26 124.0 189 42.3
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 2.7e-24 116.7 177 42.4
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 8.0e-24 115.2 202 40.1
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.4e-23 114.4 280 34.3
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.8e-23 114.0 181 45.9
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.8e-23 114.0 275 33.5
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 3.0e-23 113.2 198 37.9
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 3.0e-23 113.2 199 40.7
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 3.0e-23 113.2 192 40.6
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 3.0e-23 113.2 177 46.3
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 1.2e-22 111.3 174 42.5
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 1.2e-22 111.3 265 33.2
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 2.0e-22 110.5 178 40.4
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 2.6e-22 110.2 198 37.9
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 2.6e-22 110.2 184 41.3
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 6.3e-21 105.5 244 36.9
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 6.3e-21 105.5 185 38.9
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 1.1e-20 104.8 178 37.6
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 3.1e-20 103.2 180 39.4
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 4.1e-20 102.8 179 38.5
C05p62860 Brassica napus HOM05D004244 ORTHO05D004964 4.1e-20 102.8 87 66.7
BolC5t34941H Brassica oleracea HOM05D004244 ORTHO05D004964 4.1e-20 102.8 87 66.7
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 4.1e-20 102.8 195 40.5
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 4.1e-20 102.8 210 35.2
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 5.4e-20 102.4 240 36.2
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 9.1e-20 101.7 177 37.9
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 1.2e-19 101.3 179 38.5
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.2e-19 101.3 187 39.6
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 2.0e-19 100.5 184 40.8
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 2.0e-19 100.5 187 39.6
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 2.7e-19 100.1 190 36.3
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 2.7e-19 100.1 189 37.0
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 3.5e-19 99.8 182 39.0
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 4.5e-19 99.4 189 39.2
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 4.5e-19 99.4 191 37.2
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 7.7e-19 98.6 195 37.4
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 1.3e-18 97.8 256 30.1
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.3e-18 97.8 187 39.0
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 2.3e-18 97.1 184 35.9
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 3.8e-18 96.3 191 35.1
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 5.0e-18 95.9 276 31.2
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 6.6e-18 95.5 199 37.7
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.1e-17 94.7 214 33.2
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 4.2e-17 92.8 176 36.9
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 5.5e-17 92.4 176 36.4
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 5.5e-17 92.4 179 35.8
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 5.5e-17 92.4 281 34.5
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 5.5e-17 92.4 182 37.4
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 7.2e-17 92.0 253 31.2
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 7.2e-17 92.0 203 36.5
A05p43120 Brassica napus HOM05D004244 ORTHO05D004964 2.1e-16 90.5 87 60.9
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 2.1e-16 90.5 181 37.0
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 2.8e-16 90.1 186 33.9
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 2.8e-16 90.1 173 41.0
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 6.1e-16 89.0 273 36.3
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 8.0e-16 88.6 199 35.7
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 8.0e-16 88.6 239 32.6
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 8.0e-16 88.6 165 38.8
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 1.4e-15 87.8 208 34.6
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.8e-15 87.4 177 40.1
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 1.8e-15 87.4 191 34.0
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 2.3e-15 87.0 186 33.9
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 2.3e-15 87.0 177 36.7
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 3.0e-15 86.7 185 36.2
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 3.0e-15 86.7 244 33.2
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 5.2e-15 85.9 191 34.0
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 1.2e-14 84.7 193 30.6
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 1.5e-14 84.3 180 33.3
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 2.6e-14 83.6 187 34.8
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 3.4e-14 83.2 175 36.0
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 4.4e-14 82.8 185 32.4
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 5.7e-14 82.4 176 34.7
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 5.7e-14 82.4 189 31.2
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 7.5e-14 82.0 200 31.5
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 9.8e-14 81.6 187 32.1
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 1.3e-13 81.3 202 32.7
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.3e-13 81.3 185 32.4
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.3e-13 81.3 184 32.6
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 2.2e-13 80.5 180 32.8
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 2.2e-13 80.5 190 33.7
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 3.7e-13 79.7 195 31.8
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 3.7e-13 79.7 195 31.8
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 4.9e-13 79.3 175 35.4
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 6.3e-13 79.0 189 30.7
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 1.8e-12 77.4 188 32.4
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 4.1e-12 76.3 169 36.7
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 1.2e-11 74.7 178 32.0
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.6e-11 74.3 184 33.2
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 2.0e-11 73.9 178 31.5
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 3.5e-11 73.2 188 33.0
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 3.5e-11 73.2 159 36.5
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 5.9e-11 72.4 151 35.8
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 5.9e-11 72.4 206 32.0
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.0e-10 71.6 179 31.8
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 2.9e-10 70.1 151 36.4
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 2.9e-10 70.1 151 33.8
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 3.9e-10 69.7 152 36.2
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 6.6e-10 68.9 178 31.5
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 1.9e-09 67.4 216 30.6
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 2.5e-09 67.0 186 29.6
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 3.3e-09 66.6 183 31.7
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 5.6e-09 65.9 180 32.2
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 7.3e-09 65.5 186 31.2
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 9.5e-09 65.1 205 30.2
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 1.6e-08 64.3 213 29.6
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 2.1e-08 63.9 188 31.9
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 3.6e-08 63.2 192 29.7
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 3.6e-08 63.2 123 38.2
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 2.0e-06 57.4 153 31.4
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 7.5e-06 55.5 150 35.3
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 9.8e-06 55.1 143 29.4


User provided reference genes

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