Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G13930 Arabidopsis lyrata HOM05D007136 ORTHO05D008986 2.4e-173 612.1 304 100.0
CARHR078150 Cardamine hirsuta HOM05D007136 ORTHO05D008986 1.9e-162 575.9 305 92.8
Carub.0003s0327 Capsella rubella HOM05D007136 ORTHO05D008986 1.2e-161 573.2 305 93.4
BraA05t23073Z Brassica rapa HOM05D007136 ORTHO05D008986 1.7e-155 552.7 305 88.5
C05p63040 Brassica napus HOM05D007136 ORTHO05D008986 2.2e-155 552.4 305 88.5
BolC5t34957H Brassica oleracea HOM05D007136 ORTHO05D008986 2.2e-155 552.4 305 88.5
Sp3g03000 Schrenkiella parvula HOM05D007136 ORTHO05D008986 1.8e-152 542.7 305 87.9
Thhalv10021212m.g Eutrema salsugineum HOM05D007136 ORTHO05D008986 6.7e-152 540.8 305 87.5
A05p43340 Brassica napus HOM05D007136 ORTHO05D008986 5.0e-147 524.6 290 87.9
Aa31LG5G14590 Aethionema arabicum HOM05D007136 ORTHO05D008986 2.2e-142 509.2 312 81.1
BcaC05g30543 Brassica carinata HOM05D007136 ORTHO05D008986 4.1e-141 505.0 287 86.1
AT3G04020 Arabidopsis thaliana HOM05D007136 ORTHO05D008986 5.7e-127 458.0 240 94.2
THA.LOC104799346 Tarenaya hassleriana HOM05D007136 ORTHO05D008986 1.2e-116 423.7 304 67.8
Thecc.10G044100 Theobroma cacao HOM05D007136 ORTHO05D008986 4.6e-92 342.0 310 54.2
Gorai.011G257200 Gossypium raimondii HOM05D007136 ORTHO05D008986 2.5e-90 336.3 309 53.7
Gohir.D10G226000 Gossypium hirsutum HOM05D007136 ORTHO05D008986 2.1e-89 333.2 309 53.1
Hma1.2p1_0683F.1_g202870 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 2.3e-88 329.7 309 52.8
Gohir.A10G217300 Gossypium hirsutum HOM05D007136 ORTHO05D008986 3.1e-88 329.3 309 52.8
Potri.010G205900 Populus trichocarpa HOM05D007136 ORTHO05D008986 4.0e-88 328.9 308 51.6
FvH4_7g22120 Fragaria vesca HOM05D007136 ORTHO05D008986 5.2e-88 328.6 308 52.9
FAN06G2040 Fragaria x ananassa HOM05D007136 ORTHO05D008986 6.8e-88 328.2 308 52.9
FAN01G1261 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.2e-87 327.4 308 52.6
FAN01G1850 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.2e-87 327.4 308 52.6
CiPaw.01G285300 Carya illinoinensis HOM05D007136 ORTHO05D008986 5.8e-87 325.1 308 51.9
Atru.chr12.462 Acer truncatum HOM05D007136 ORTHO05D008986 1.3e-86 323.9 308 52.9
Dinv26003 Davidia involucrata HOM05D007136 ORTHO05D008986 1.7e-86 323.6 308 53.2
Prupe.2G233400 Prunus persica HOM05D007136 ORTHO05D008986 4.9e-86 322.0 308 50.3
MD07G1196400 Malus domestica HOM05D007136 ORTHO05D008986 6.4e-86 321.6 308 50.6
Haze_17049 Corylus avellana HOM05D007136 ORTHO05D008986 1.9e-85 320.1 319 50.8
RcHm_v2.0_Chr1g0366511 Rosa chinensis HOM05D007136 ORTHO05D008986 1.9e-85 320.1 308 51.9
CANSAT56G3368 Cannabis sativa HOM05D007136 ORTHO05D008986 2.4e-85 319.7 307 51.8
FAN06G2061 Fragaria x ananassa HOM05D007136 ORTHO05D008986 3.2e-85 319.3 308 51.6
TWI15G0021 Tripterygium wilfordii HOM05D007136 ORTHO05D008986 3.2e-85 319.3 308 51.6
GSVIVG01016535001 Vitis vinifera HOM05D007136 ORTHO05D008986 4.1e-85 318.9 308 51.9
Glyma.18G289500 Glycine max HOM05D007136 ORTHO05D008986 9.2e-85 317.8 308 51.0
Atru.chr12.484 Acer truncatum HOM05D007136 ORTHO05D008986 1.2e-84 317.4 308 51.9
Rhsim09G0165500 Rhododendron simsii HOM05D007136 ORTHO05D008986 1.2e-84 317.4 308 51.3
Cc02_g07990 Coffea canephora HOM05D007136 ORTHO05D008986 3.5e-84 315.8 309 50.8
Ciclev10032197m.g Citrus clementina HOM05D007136 ORTHO05D008986 1.9e-82 310.1 308 49.7
TAR633G2090 Trochodendron aralioides HOM05D000330 ORTHO05D008986 2.5e-82 309.7 308 50.3
VMungo1383G1564 Vigna mungo HOM05D007136 ORTHO05D008986 2.5e-82 309.7 308 49.7
vmacro10240 Vaccinium macrocarpon HOM05D007136 ORTHO05D008986 3.3e-82 309.3 309 48.9
FAN03G0232 Fragaria x ananassa HOM05D007136 ORTHO05D008986 7.3e-82 308.1 308 50.3
Sabra10G0159100 Salix brachista HOM05D007136 ORTHO05D008986 1.2e-81 307.4 354 45.8
PGR044G0021 Punica granatum HOM05D007136 ORTHO05D008986 1.6e-81 307.0 306 49.3
Nn2g10391 Nelumbo nucifera HOM05D007136 ORTHO05D008986 6.2e-81 305.1 308 47.4
Phvul.008G012700 Phaseolus vulgaris HOM05D007136 ORTHO05D008986 1.4e-80 303.9 308 49.0
Lj1g0011729 Lotus japonicus HOM05D007136 ORTHO05D008986 5.2e-80 302.0 308 49.4
Nitab4.5_0000931g0010 Nicotiana tabacum HOM05D007136 ORTHO05D008986 5.2e-80 302.0 309 49.2
Ca_07254_v3 Cicer arietinum L. HOM05D007136 ORTHO05D008986 1.5e-79 300.4 308 48.7
Aqoxy2G02097 Aquilegia oxysepala HOM05D007136 ORTHO05D008986 5.8e-79 298.5 306 48.0
TPR.G15525 Trifolium pratense HOM05D007136 ORTHO05D008986 5.8e-79 298.5 308 49.0
Lalb_Chr10g0091721 Lupinus albus HOM05D007136 ORTHO05D008986 7.6e-79 298.1 308 48.4
Psat3g181320 Pisum sativum HOM05D007136 ORTHO05D008986 9.9e-79 297.7 308 48.4
Actinidia29223 Actinidia chinensis HOM05D007136 ORTHO05D008986 1.7e-78 297.0 308 48.1
Medtr7g024560 Medicago truncatula HOM05D007136 ORTHO05D008986 3.7e-78 295.8 308 48.1
Migut.F01500 Erythranthe guttata HOM05D007136 ORTHO05D008986 4.9e-78 295.4 309 46.3
PSO151G0201 Papaver somniferum HOM05D007136 ORTHO05D008986 4.9e-78 295.4 299 49.8
PSO339G3352 Papaver somniferum HOM05D007136 ORTHO05D008986 4.9e-78 295.4 298 50.0
arahy.Tifrunner.gnm1.ann1.IQ4HGL Arachis hypogaea HOM05D007136 ORTHO05D008986 2.4e-77 293.1 309 47.9
arahy.Tifrunner.gnm1.ann1.RSMT0C Arachis hypogaea HOM05D007136 ORTHO05D008986 2.4e-77 293.1 309 47.9
Sopen06g013560 Solanum pennellii HOM05D007136 ORTHO05D008986 2.4e-77 293.1 309 47.6
Peaxi162Scf00658g00728 Petunia axillaris HOM05D007136 ORTHO05D008986 5.4e-77 292.0 303 47.5
AUR62038352 Chenopodium quinoa HOM05D007136 ORTHO05D008986 1.2e-76 290.8 306 48.0
Hund20032 Selenicereus undatus HOM05D007136 ORTHO05D008986 1.6e-76 290.4 341 44.9
DCAR_027635 Daucus carota HOM05D007136 ORTHO05D008986 6.0e-76 288.5 309 47.2
Cfa001492 Carpinus fangiana HOM05D007136 ORTHO05D008986 7.8e-76 288.1 268 52.2
MSTRG.8246 Avicennia marina HOM05D007136 ORTHO05D008986 1.0e-75 287.7 309 46.6
Ah.16g107010 Amaranthus hybridus HOM05D007136 ORTHO05D008986 2.3e-75 286.6 306 45.4
ClCG09G019950 Citrullus lanatus HOM05D007136 ORTHO05D008986 3.9e-75 285.8 309 48.5
Lsat_1_v5_gn_2_119701 Lactuca sativa HOM05D007136 ORTHO05D008986 5.1e-75 285.4 306 46.7
Nitab4.5_0000065g0080 Nicotiana tabacum HOM05D007136 ORTHO05D008986 5.1e-75 285.4 308 48.7
SGA_v2.0_scaffold86G26943 Striga asiatica HOM05D007136 ORTHO05D008986 8.6e-75 284.6 307 46.3
QL08p059192 Quercus lobata HOM05D007136 ORTHO05D008986 1.1e-74 284.3 430 38.4
COL.COLO4_14997 Corchorus olitorius HOM05D007136 ORTHO05D008986 2.5e-74 283.1 355 43.7
MELO3C021650.2 Cucumis melo HOM05D007136 ORTHO05D008986 2.5e-74 283.1 310 48.4
Sed0006263 Sechium edule HOM05D007136 ORTHO05D008986 5.6e-74 282.0 309 46.3
SalBow6G2062 Salvia bowleyana HOM05D007136 ORTHO05D008986 9.6e-74 281.2 309 45.6
CsaV3_5G026510 Cucumis sativus L. HOM05D007136 ORTHO05D008986 1.6e-73 280.4 309 46.9
ECA238G4577 Erigeron canadensis HOM05D007136 ORTHO05D008986 6.2e-73 278.5 312 45.8
EL10Ac2g03388 Beta vulgaris HOM05D007136 ORTHO05D008986 3.4e-71 272.7 357 41.7
HanXRQChr14g0458151 Helianthus annuus HOM05D007136 ORTHO05D008986 6.4e-70 268.5 309 43.4
ATR0559G284 Amborella trichopoda HOM05D007136 ORTHO05D008986 3.5e-68 262.7 293 45.7
Os03g0276600 Oryza sativa ssp. japonica HOM05D007136 ORTHO05D008986 1.4e-64 250.8 312 42.3
Manes.07G114900 Manihot esculenta HOM05D007136 ORTHO05D008986 2.4e-64 250.0 238 50.8
Eucgr.J00020 Eucalyptus grandis HOM05D007136 ORTHO05D008986 1.7e-62 243.8 238 47.9
HPP92_001682 Vanilla planifolia HOM05D007136 ORTHO05D008986 3.8e-62 242.7 309 40.1
Hma1.2p1_0683F.1_g202860 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 4.9e-62 242.3 251 50.2
CDE09G1315 Ceratophyllum demersum HOM05D007136 ORTHO05D008986 8.4e-62 241.5 303 43.6
Cpa.g.sc1.397 Carica papaya HOM05D007136 ORTHO05D008986 2.1e-60 236.9 242 50.4
unitig_736.g22315 Utricularia gibba HOM05D007136 ORTHO05D008986 1.5e-58 230.7 325 41.5
MBI05_g22899_MAGBIO Magnolia biondii HOM05D007136 ORTHO05D008986 2.5e-58 229.9 297 42.1
SEGI_31981 Sequoiadendron giganteum HOM05D007136 ORTHO05D008986 4.3e-58 229.2 293 39.9
CSS0027543 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.3e-57 227.6 267 46.8
CSS0005502 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 2.8e-57 226.5 267 46.4
Sc09g0007080 Simmondsia chinensis HOM05D007136 ORTHO05D008986 2.9e-54 216.5 223 47.5
Solyc06g043070.4 Solanum lycopersicum HOM05D007136 ORTHO05D008986 6.0e-52 208.8 240 45.4
Pp3c12_11030 Physcomitrium patens HOM05D007136 ORTHO05D008986 3.0e-51 206.5 289 35.3
Zm00001eb012480 Zea mays HOM05D007136 ORTHO05D008986 2.4e-48 196.8 287 39.0
Lj4C909G7 Lonicera japonica HOM05D007136 ORTHO05D008986 7.6e-47 191.8 218 45.4
Duzib106G1934 Durio zibethinus HOM05D007136 ORTHO05D008986 1.6e-44 184.1 175 51.4
Dinv31448 Davidia involucrata HOM05D007136 ORTHO05D008986 3.7e-41 172.9 232 41.4
Mapoly0002s0030 Marchantia polymorpha HOM05D007136 ORTHO05D008986 1.3e-35 154.5 268 31.0
Glyma.02G092900 Glycine max HOM05D007136 ORTHO05D008986 1.5e-34 151.0 241 36.5
AUR62041862 Chenopodium quinoa HOM05D007136 ORTHO05D008986 1.1e-32 144.8 116 54.3
CSS0002221 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 2.4e-16 90.5 67 61.2
CAN.G1401.1 Capsicum annuum HOM05D007136 ORTHO05D008986 2.4e-16 90.5 65 56.9
AUR62041861 Chenopodium quinoa HOM05D007136 ORTHO05D008986 7.0e-16 89.0 113 44.2
CSS0010171 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 9.1e-16 88.6 67 59.7
Solyc06g043060.1 Solanum lycopersicum HOM05D007136 ORTHO05D008986 3.5e-15 86.7 67 55.2
FAN10G3057 Fragaria x ananassa HOM05D007136 ORTHO05D025577 2.5e-13 80.5 63 55.6
SHI07863 Sapria himalayana HOM05D007136 ORTHO05D008986 3.0e-11 73.6 64 56.2


User provided reference genes

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