Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 7.8e-149 530.4 263 100.0
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 6.9e-137 490.7 267 92.5
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 2.1e-109 399.4 271 81.5
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 6.3e-106 387.9 266 75.2
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 3.1e-105 385.6 264 78.4
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 2.2e-103 379.4 265 76.6
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 1.4e-97 360.1 264 72.3
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 1.7e-95 353.2 263 72.2
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 4.2e-94 348.6 267 71.2
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 3.9e-92 342.0 263 70.0
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 3.9e-92 342.0 263 70.0
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 2.8e-90 335.9 259 70.7
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 7.7e-88 327.8 264 68.2
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 5.9e-80 301.6 290 60.3
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 1.3e-79 300.4 293 61.4
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 9.4e-78 294.3 287 59.2
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 4.7e-77 292.0 287 58.9
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 1.2e-75 287.3 279 58.1
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 1.6e-72 276.9 276 57.6
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 7.2e-70 268.1 285 54.0
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 2.1e-69 266.5 294 55.8
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 3.6e-69 265.8 292 57.2
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 3.0e-68 262.7 282 56.7
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 4.0e-68 262.3 287 53.7
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 2.6e-67 259.6 284 54.6
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 3.4e-67 259.2 288 53.1
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 4.4e-67 258.8 283 54.1
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 4.4e-67 258.8 288 53.1
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 5.7e-67 258.5 285 54.0
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 9.8e-67 257.7 285 54.0
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 9.8e-67 257.7 285 54.0
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 9.8e-67 257.7 285 54.0
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 1.8e-65 253.4 286 54.9
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 3.1e-65 252.7 288 51.7
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 4.1e-65 252.3 234 60.7
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 9.2e-65 251.1 292 53.1
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 8.0e-61 238.0 272 56.2
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 1.0e-60 237.7 277 53.1
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 1.4e-57 227.3 302 50.0
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 3.5e-48 196.1 269 47.2
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.4e-41 173.3 285 45.3
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 2.7e-40 169.9 295 45.4
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 1.6e-37 160.6 266 43.2
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 5.2e-36 155.6 304 42.8
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 3.4e-35 152.9 306 40.2
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 8.4e-34 148.3 307 38.8
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 8.4e-34 148.3 307 38.8
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 2.4e-33 146.7 301 39.5
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 4.1e-33 146.0 307 37.8
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.1e-33 146.0 279 42.7
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 1.6e-32 144.1 320 37.2
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.0e-31 141.4 306 38.2
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 3.0e-31 139.8 294 36.4
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 3.9e-31 139.4 297 36.7
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 8.7e-31 138.3 314 38.5
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 1.1e-30 137.9 317 37.5
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 1.5e-30 137.5 294 38.8
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 2.5e-30 136.7 301 35.2
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 5.6e-30 135.6 294 38.4
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 9.6e-30 134.8 295 37.6
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 1.6e-29 134.0 310 37.4
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 3.6e-29 132.9 322 35.7
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 3.6e-29 132.9 295 40.0
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 6.2e-29 132.1 292 38.4
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.1e-28 131.3 310 38.4
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 2.4e-28 130.2 289 37.4
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 6.9e-28 128.6 310 38.7
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 9.0e-28 128.3 307 33.9
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 9.0e-28 128.3 291 35.7
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 1.2e-27 127.9 309 35.6
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 1.2e-27 127.9 314 37.6
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.5e-27 127.5 310 36.5
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 1.5e-27 127.5 277 36.5
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 1.5e-27 127.5 297 37.4
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 2.0e-27 127.1 284 33.8
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 2.0e-27 127.1 293 34.5
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 2.6e-27 126.7 300 35.7
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 3.4e-27 126.3 322 35.4
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 7.6e-27 125.2 283 38.5
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 7.6e-27 125.2 305 34.8
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 1.7e-26 124.0 282 37.9
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 1.7e-26 124.0 289 37.0
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 2.2e-26 123.6 280 36.8
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 2.9e-26 123.2 312 34.9
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 2.9e-26 123.2 236 39.4
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 3.8e-26 122.9 264 39.4
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 3.8e-26 122.9 278 37.8
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 3.8e-26 122.9 302 36.8
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 3.8e-26 122.9 276 38.8
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 4.9e-26 122.5 296 37.2
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 4.9e-26 122.5 298 35.9
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 8.4e-26 121.7 303 37.0
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 1.1e-25 121.3 303 37.0
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 1.4e-25 120.9 324 33.0
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 4.2e-25 119.4 306 36.9
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 5.4e-25 119.0 301 36.2
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 5.4e-25 119.0 286 35.0
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 7.1e-25 118.6 290 37.2
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 1.2e-24 117.9 277 34.7
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 1.6e-24 117.5 313 35.1
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 1.6e-24 117.5 291 33.3
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 2.7e-24 116.7 263 37.3
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 4.6e-24 115.9 254 37.0
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 6.0e-24 115.5 298 35.6
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 7.8e-24 115.2 290 34.8
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 7.8e-24 115.2 308 34.1
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.7e-23 114.0 283 36.0
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 3.0e-23 113.2 303 35.6
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 3.0e-23 113.2 273 37.7
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 5.1e-23 112.5 271 35.4
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 8.7e-23 111.7 311 33.1
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 1.1e-22 111.3 305 33.1
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 1.9e-22 110.5 313 35.5
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 4.3e-22 109.4 288 35.8
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 4.3e-22 109.4 300 35.3
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 5.6e-22 109.0 293 33.4
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 7.3e-22 108.6 295 35.3
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 1.6e-21 107.5 273 34.1
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 1.6e-21 107.5 267 36.7
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 2.1e-21 107.1 247 37.2
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 2.8e-21 106.7 267 34.8
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 3.6e-21 106.3 218 37.6
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 6.2e-21 105.5 166 45.8
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 6.2e-21 105.5 281 33.5
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 6.2e-21 105.5 310 31.0
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 8.1e-21 105.1 193 41.5
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 8.1e-21 105.1 260 35.4
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 1.4e-20 104.4 182 39.6
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 3.1e-20 103.2 294 32.0
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 5.3e-20 102.4 273 32.2
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 5.3e-20 102.4 292 31.5
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 6.9e-20 102.1 167 43.1
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 6.9e-20 102.1 259 35.5
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 6.9e-20 102.1 258 34.1
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 1.5e-19 100.9 282 33.7
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.0e-19 100.5 302 36.1
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 2.6e-19 100.1 286 32.5
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 2.6e-19 100.1 294 36.1
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.6e-19 100.1 291 31.6
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 3.4e-19 99.8 105 50.5
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 7.6e-19 98.6 97 50.5
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 7.6e-19 98.6 294 31.0
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 1.7e-18 97.4 178 38.2
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 6.4e-18 95.5 298 32.6
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 1.9e-17 94.0 99 54.5
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 3.2e-17 93.2 174 39.1
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 2.1e-16 90.5 299 31.1
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 2.1e-16 90.5 287 29.6
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 2.1e-16 90.5 274 32.8
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.1e-16 90.5 263 31.9
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 7.9e-16 88.6 281 32.0
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 1.0e-15 88.2 210 32.4
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 2.3e-15 87.0 171 40.4
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 3.0e-15 86.7 259 34.7
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 3.9e-15 86.3 280 28.6
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 3.9e-15 86.3 177 32.2
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 5.1e-15 85.9 178 38.8
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.1e-14 84.7 291 29.2
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 5.6e-14 82.4 257 29.2
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 9.6e-14 81.6 208 33.7
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.3e-13 81.3 247 32.4
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.6e-13 80.9 298 28.5
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 2.8e-13 80.1 248 35.5
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 3.7e-13 79.7 175 33.7
BcaC03g13578 Brassica carinata HOM05D003715 ORTHO05D003958 4.8e-13 79.3 97 47.4
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 8.1e-13 78.6 258 31.4
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.4e-12 77.8 298 29.2
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 2.0e-11 73.9 93 48.4
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 4.5e-11 72.8 95 45.3
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 7.6e-11 72.0 268 29.9
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 2.9e-10 70.1 106 42.5
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 2.9e-10 70.1 68 54.4
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 3.8e-10 69.7 277 28.5
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 3.8e-10 69.7 161 32.9
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 6.4e-10 68.9 269 28.6
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 1.4e-09 67.8 173 32.9
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 9.3e-09 65.1 199 32.7
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 1.6e-08 64.3 276 26.8
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 2.1e-08 63.9 275 28.0
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 2.7e-08 63.5 146 32.9
Duzib106G0556 Durio zibethinus HOM05D003715 ORTHO05D003958 2.5e-06 57.0 229 31.4


User provided reference genes

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