Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G13600 Arabidopsis lyrata HOM05D015281 ORTHO05D017419 6.4e-117 424.1 212 100.0
Carub.0001s3320 Capsella rubella HOM05D015281 ORTHO05D017419 1.3e-53 213.8 173 65.3
AT3G03776 Arabidopsis thaliana HOM05D015281 ORTHO05D017419 3.8e-53 212.2 154 72.1
Sp7g28390 Schrenkiella parvula HOM05D015281 ORTHO05D017419 1.0e-50 204.1 180 65.0
AL1G50480 Arabidopsis lyrata HOM05D015281 ORTHO05D017419 2.3e-50 203.0 142 73.9
Carub.0001s3319 Capsella rubella HOM05D015281 ORTHO05D017419 5.7e-49 198.4 127 75.6
CARHR034380 Cardamine hirsuta HOM05D015281 ORTHO05D017419 1.2e-43 180.6 151 64.2
BraA08t35291Z Brassica rapa HOM05D000178 ORTHO05D011115 5.9e-38 161.8 173 55.5
A08p33750 Brassica napus HOM05D000178 ORTHO05D011115 2.5e-36 156.4 164 53.7
BolC8t49038H Brassica oleracea HOM05D000178 ORTHO05D011115 4.4e-25 119.0 174 47.1
Thhalv10027550m.g Eutrema salsugineum HOM05D015281 ORTHO05D017419 3.1e-23 112.8 130 51.5
C08p14020 Brassica napus HOM05D000178 ORTHO05D011115 2.9e-21 106.3 167 44.9
THA.LOC104825137 Tarenaya hassleriana HOM05D015281 ORTHO05D017419 6.5e-21 105.1 173 41.0
BcaC07g38596 Brassica carinata HOM05D014980 ORTHO05D011115 1.1e-20 104.4 167 44.3
Atru.chr9.2110 Acer truncatum HOM05D009668 ORTHO05D009578 1.7e-13 80.5 170 37.1
Atru.chr1.58 Acer truncatum HOM05D009668 ORTHO05D009578 1.1e-12 77.8 177 35.6
FvH4_3g23891 Fragaria vesca HOM05D008364 ORTHO05D009578 3.3e-12 76.3 133 33.8
FAN11G2266 Fragaria x ananassa HOM05D008364 ORTHO05D009578 3.3e-12 76.3 133 33.8
Ciclev10007119m.g Citrus clementina HOM05D009668 ORTHO05D009578 2.8e-11 73.2 169 34.3
CiPaw.12G135100 Carya illinoinensis HOM05D008364 ORTHO05D009578 4.7e-11 72.4 97 37.1
QL05p084023 Quercus lobata HOM05D008364 ORTHO05D009578 6.1e-11 72.0 99 37.4
Sp6g17390 Schrenkiella parvula HOM05D013083 ORTHO05D009578 1.0e-10 71.2 159 32.1
Medtr7g109930 Medicago truncatula HOM05D008364 ORTHO05D009578 4.0e-10 69.3 67 46.3
Potri.005G103500 Populus trichocarpa HOM05D008364 ORTHO05D009578 4.0e-10 69.3 173 32.4
Sabra05G0085600 Salix brachista HOM05D000192 ORTHO05D000123 5.2e-10 68.9 179 30.7
QL09p004857 Quercus lobata HOM05D009668 ORTHO05D009578 6.8e-10 68.6 159 31.4
Medtr3g089950 Medicago truncatula HOM05D008364 ORTHO05D009578 8.9e-10 68.2 131 31.3
Potri.002G011500 Populus trichocarpa HOM05D008364 ORTHO05D009578 8.9e-10 68.2 129 31.8
RcHm_v2.0_Chr2g0175431 Rosa chinensis HOM05D009668 ORTHO05D009578 2.0e-09 67.0 169 29.0
Medtr3g084890 Medicago truncatula HOM05D009668 ORTHO05D009578 2.6e-09 66.6 83 43.4
Prupe.5G226000 Prunus persica HOM05D008364 ORTHO05D009578 2.6e-09 66.6 76 40.8
Prupe.4G231200 Prunus persica HOM05D008364 ORTHO05D009578 3.4e-09 66.2 125 34.4
Sabra02G0008900 Salix brachista HOM05D008364 ORTHO05D009578 3.4e-09 66.2 130 33.8
Aa31LG5G12270 Aethionema arabicum HOM05D013083 ORTHO05D009578 7.5e-09 65.1 119 35.3
FvH4_6g53282 Fragaria vesca HOM05D009668 ORTHO05D009578 7.5e-09 65.1 170 28.8
FAN02G0808 Fragaria x ananassa HOM05D009668 ORTHO05D009578 9.8e-09 64.7 170 28.8
QL09p001451 Quercus lobata HOM05D008364 ORTHO05D009578 9.8e-09 64.7 151 31.1
Sabra02G0008600 Salix brachista HOM05D008364 ORTHO05D009578 9.8e-09 64.7 134 33.6
Psat2g096040 Pisum sativum HOM05D022442 ORTHO05D009578 1.3e-08 64.3 81 39.5
FAN09G4247 Fragaria x ananassa HOM05D009668 ORTHO05D009578 2.9e-08 63.2 161 29.2
THA.LOC104813256 Tarenaya hassleriana HOM05D013083 ORTHO05D009578 6.4e-08 62.0 170 31.2
FAN14G3007 Fragaria x ananassa HOM05D009668 ORTHO05D009578 8.3e-08 61.6 80 33.8
Carub.0007s1419 Capsella rubella HOM05D013083 ORTHO05D009578 1.1e-07 61.2 147 31.3
Gohir.A01G086301 Gossypium hirsutum HOM05D009668 ORTHO05D009578 1.1e-07 61.2 71 40.8
THA.LOC104807208 Tarenaya hassleriana HOM05D011200 ORTHO05D013143 1.1e-07 61.2 102 31.4
TPR.G4040 Trifolium pratense HOM05D009668 ORTHO05D009578 1.1e-07 61.2 156 31.4
Prupe.3G304900 Prunus persica HOM05D008364 ORTHO05D009578 1.4e-07 60.8 68 39.7
Gohir.D01G072500 Gossypium hirsutum HOM05D009668 ORTHO05D009578 1.8e-07 60.5 69 40.6
Gorai.002G095500 Gossypium raimondii HOM05D009668 ORTHO05D009578 1.8e-07 60.5 69 40.6
QL08p061688 Quercus lobata HOM05D008364 ORTHO05D009578 2.4e-07 60.1 171 29.2
Medtr7g029145 Medicago truncatula HOM05D022442 ORTHO05D036748 4.1e-07 59.3 202 28.2
Thecc.07G023900 Theobroma cacao HOM05D009668 ORTHO05D009578 4.1e-07 59.3 57 43.9
Ca_09229_v3 Cicer arietinum L. HOM05D000049 ORTHO05D000027 5.4e-07 58.9 75 38.7
FvH4_6g53281 Fragaria vesca HOM05D009668 ORTHO05D009578 5.4e-07 58.9 101 29.7
MD17G1012800 Malus domestica HOM05D008364 ORTHO05D009578 7.0e-07 58.5 144 31.2
Actinidia05040 Actinidia chinensis HOM05D009996 ORTHO05D011842 7.8e-06 55.1 78 35.9
BraA02t06029Z Brassica rapa HOM05D013083 ORTHO05D009578 7.8e-06 55.1 172 30.8


User provided reference genes

Program Settings