Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 5.6e-124 447.6 220 100.0
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 2.8e-123 445.3 220 99.1
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 4.0e-122 441.4 220 98.2
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 1.2e-121 439.9 220 97.7
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 3.4e-121 438.3 220 96.8
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 3.7e-120 434.9 220 96.4
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 2.4e-119 432.2 220 94.5
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 2.4e-119 432.2 220 94.5
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 9.2e-119 430.3 220 94.1
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 1.6e-118 429.5 220 94.1
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 7.8e-118 427.2 221 94.1
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 2.9e-112 408.7 212 93.9
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 1.9e-111 406.0 208 93.8
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 5.4e-111 404.4 208 93.3
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 1.6e-110 402.9 220 89.5
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 2.7e-110 402.1 218 89.4
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 3.9e-109 398.3 205 93.2
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 5.6e-108 394.4 205 92.7
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 1.0e-101 373.6 211 83.9
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 9.9e-97 357.1 221 82.4
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 4.2e-79 298.5 210 68.1
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 3.1e-74 282.3 204 66.7
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 1.2e-73 280.4 206 67.0
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 3.4e-73 278.9 204 68.6
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 3.8e-72 275.4 207 64.7
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 1.9e-71 273.1 212 62.7
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.9e-71 273.1 216 61.6
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 2.5e-71 272.7 204 65.7
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 4.2e-71 271.9 219 61.2
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 5.5e-71 271.6 204 66.2
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 7.2e-71 271.2 204 65.2
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 1.6e-70 270.0 203 66.0
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 2.1e-70 269.6 203 62.6
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 2.1e-70 269.6 204 64.7
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 2.7e-70 269.2 217 64.5
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 1.3e-69 266.9 217 60.4
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 1.8e-69 266.5 204 61.8
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.8e-69 266.5 215 60.0
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 2.3e-69 266.2 217 60.4
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 2.3e-69 266.2 220 60.0
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 3.0e-69 265.8 217 60.8
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 6.7e-69 264.6 211 62.1
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 8.7e-69 264.2 202 62.9
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 8.7e-69 264.2 212 62.3
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.5e-68 263.5 212 59.4
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.5e-68 263.5 212 59.4
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 1.5e-68 263.5 203 62.6
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 1.5e-68 263.5 207 61.4
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 1.5e-68 263.5 219 60.3
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 4.3e-68 261.9 206 61.7
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 5.7e-68 261.5 206 61.7
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 5.7e-68 261.5 206 61.7
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 5.7e-68 261.5 206 61.7
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 9.7e-68 260.8 206 61.2
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 9.7e-68 260.8 211 61.1
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 1.3e-67 260.4 197 62.9
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 1.6e-67 260.0 203 62.1
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 2.2e-67 259.6 204 62.7
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 2.8e-67 259.2 209 62.2
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 3.7e-67 258.8 202 62.9
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 6.3e-67 258.1 215 60.0
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 6.3e-67 258.1 199 62.8
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 8.2e-67 257.7 202 62.4
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 1.1e-66 257.3 209 60.8
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 1.1e-66 257.3 209 60.8
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 1.8e-66 256.5 211 58.8
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 4.1e-66 255.4 203 62.1
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 4.1e-66 255.4 202 61.9
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 5.3e-66 255.0 212 59.0
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 6.9e-66 254.6 211 60.2
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 2.0e-65 253.1 219 56.6
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 2.0e-65 253.1 212 58.5
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 2.0e-65 253.1 209 60.3
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 2.0e-65 253.1 209 60.3
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 2.0e-65 253.1 209 60.3
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 2.0e-65 253.1 219 58.4
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 3.4e-65 252.3 203 59.6
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 1.3e-64 250.4 209 60.3
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 1.3e-64 250.4 200 60.5
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 2.9e-64 249.2 209 60.3
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 3.8e-64 248.8 212 55.7
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 2.5e-63 246.1 206 57.8
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 5.5e-63 245.0 214 58.4
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 6.1e-62 241.5 228 55.7
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 1.0e-61 240.7 214 53.3
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 3.9e-61 238.8 219 55.3
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 5.1e-61 238.4 191 62.8
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 4.4e-60 235.3 215 54.9
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 4.4e-60 235.3 220 54.1
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 9.7e-60 234.2 202 55.4
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 6.3e-59 231.5 215 52.6
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 9.1e-58 227.6 210 52.9
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 8.8e-53 211.1 173 60.7
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 7.7e-49 198.0 203 50.2
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 7.7e-49 198.0 203 50.2
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 1.1e-47 194.1 167 57.5
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 1.9e-47 193.4 174 57.5
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 2.5e-47 193.0 174 57.5
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 3.6e-46 189.1 211 48.8
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 2.6e-44 183.0 190 51.1
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 1.3e-43 180.6 217 43.3
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 2.4e-42 176.4 136 61.8
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 1.6e-38 163.7 141 56.7
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 2.7e-38 162.9 212 43.9
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 1.0e-37 161.0 105 67.6
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 2.3e-37 159.8 140 54.3
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 5.9e-33 145.2 105 62.9
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 1.7e-32 143.7 109 60.6
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 4.2e-31 139.0 222 33.8
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 1.2e-30 137.5 105 61.9
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 1.1e-26 124.4 103 60.2
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 2.4e-26 123.2 112 52.7
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 7.8e-25 118.2 83 65.1
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 4.7e-22 109.0 91 68.1
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 3.4e-20 102.8 52 96.2
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 4.4e-20 102.4 56 89.3
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 7.5e-20 101.7 53 94.3
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 7.5e-20 101.7 52 94.2
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 2.2e-19 100.1 52 92.3
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 1.4e-18 97.4 96 52.1
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 1.4e-18 97.4 96 52.1
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 1.4e-18 97.4 96 52.1
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 1.4e-18 97.4 96 52.1
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 1.4e-18 97.4 96 52.1
arahy.Tifrunner.gnm1.ann1.3YR680 Arachis hypogaea HOM05D001733 ORTHO05D001882 5.0e-16 89.0 70 57.1
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 8.6e-16 88.2 140 37.1
arahy.Tifrunner.gnm1.ann1.BIR89S Arachis hypogaea HOM05D001903 ORTHO05D001847 1.0e-08 64.7 93 41.9
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 2.5e-07 60.1 50 52.0
Mapoly0051s0114 Marchantia polymorpha HOM05D052641 ORTHO05D001882 3.3e-07 59.7 74 43.2
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 7.3e-07 58.5 50 50.0
ATR0660G006 Amborella trichopoda HOM05D001733 ORTHO05D001882 1.2e-06 57.8 47 51.1


User provided reference genes

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