Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 2.7e-91 338.6 163 100.0
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 5.9e-38 161.4 91 84.6
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 2.2e-37 159.5 91 83.5
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 3.2e-36 155.6 91 81.3
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 5.5e-36 154.8 91 80.2
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 8.0e-35 151.0 91 79.1
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 3.0e-34 149.1 91 78.0
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 8.3e-32 141.0 85 77.6
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 8.3e-32 141.0 85 77.6
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 2.7e-30 136.0 84 76.2
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 5.9e-30 134.8 84 77.4
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 1.3e-29 133.7 84 75.0
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 1.7e-29 133.3 75 82.7
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 3.6e-27 125.6 75 78.7
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.4e-26 123.6 75 72.0
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 4.0e-26 122.1 75 72.0
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 5.2e-26 121.7 75 76.0
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 2.0e-25 119.8 85 63.5
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 2.6e-25 119.4 75 69.3
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 2.6e-25 119.4 75 70.7
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 3.4e-25 119.0 84 61.9
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 4.4e-25 118.6 75 70.7
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 9.8e-25 117.5 84 64.3
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 9.8e-25 117.5 75 65.3
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 1.3e-24 117.1 75 68.0
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 1.7e-24 116.7 82 67.1
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 1.7e-24 116.7 75 70.7
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 1.7e-24 116.7 75 70.7
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 1.7e-24 116.7 84 60.7
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 1.7e-24 116.7 75 64.0
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 2.2e-24 116.3 75 68.0
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 2.8e-24 115.9 75 69.3
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 3.7e-24 115.5 75 64.0
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 3.7e-24 115.5 84 61.9
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 3.7e-24 115.5 84 60.7
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 4.9e-24 115.2 84 60.7
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 1.1e-23 114.0 75 65.3
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 1.4e-23 113.6 84 60.7
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 1.4e-23 113.6 75 62.7
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 1.8e-23 113.2 74 68.9
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 1.8e-23 113.2 75 66.7
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 1.8e-23 113.2 75 65.3
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 2.4e-23 112.8 75 65.3
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 2.4e-23 112.8 75 65.3
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 3.2e-23 112.5 75 66.7
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 3.2e-23 112.5 84 59.5
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 3.2e-23 112.5 75 68.0
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 4.1e-23 112.1 75 64.0
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 4.1e-23 112.1 77 63.6
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 4.1e-23 112.1 75 62.7
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 4.1e-23 112.1 75 66.7
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 5.4e-23 111.7 75 66.7
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 5.4e-23 111.7 84 59.5
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 7.0e-23 111.3 75 65.3
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 7.0e-23 111.3 68 73.5
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 7.0e-23 111.3 75 65.3
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 7.0e-23 111.3 75 62.7
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 7.0e-23 111.3 75 65.3
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 7.0e-23 111.3 75 65.3
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 9.2e-23 110.9 84 58.3
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.2e-22 110.5 75 61.3
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 1.2e-22 110.5 72 63.9
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.6e-22 110.2 84 58.3
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 2.7e-22 109.4 75 62.7
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 5.9e-22 108.2 75 61.3
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 5.9e-22 108.2 75 64.0
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 5.9e-22 108.2 75 62.7
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 5.9e-22 108.2 75 60.0
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 7.8e-22 107.8 75 62.7
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 7.8e-22 107.8 75 61.3
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 1.0e-21 107.5 76 63.2
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 1.0e-21 107.5 75 62.7
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 1.0e-21 107.5 75 65.3
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.3e-21 107.1 75 64.0
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.3e-21 107.1 75 61.3
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 1.7e-21 106.7 75 62.7
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 2.3e-21 106.3 76 61.8
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 3.9e-21 105.5 75 60.0
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 5.0e-21 105.1 84 57.1
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 5.0e-21 105.1 84 57.1
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 6.6e-21 104.8 75 60.0
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 6.6e-21 104.8 75 60.0
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 6.6e-21 104.8 75 60.0
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 6.6e-21 104.8 75 60.0
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 8.6e-21 104.4 74 62.2
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 3.3e-20 102.4 75 60.0
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 5.6e-20 101.7 75 57.3
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 7.3e-20 101.3 75 58.7
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 7.3e-20 101.3 75 58.7
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 7.3e-20 101.3 75 56.0
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.2e-19 100.5 74 60.8
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 1.2e-19 100.5 75 58.7
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 2.1e-19 99.8 75 56.0
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 2.8e-19 99.4 74 59.5
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 4.7e-19 98.6 75 56.0
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 6.1e-19 98.2 74 56.8
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 8.0e-19 97.8 75 57.3
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 8.9e-18 94.4 75 54.7
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.5e-17 93.6 75 56.0
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 3.4e-17 92.4 81 50.6
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 3.4e-17 92.4 73 56.2
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 5.8e-17 91.7 88 47.7
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 7.5e-17 91.3 74 55.4
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 1.7e-16 90.1 88 46.6
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 8.3e-16 87.8 87 47.1
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 1.3e-13 80.5 86 40.7
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.3e-13 80.5 69 49.3
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 1.7e-13 80.1 81 49.4
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 5.0e-13 78.6 72 41.7
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 5.6e-12 75.1 67 47.8
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 7.3e-12 74.7 68 42.6
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 2.1e-11 73.2 68 44.1
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 3.6e-11 72.4 73 38.4
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 6.2e-11 71.6 68 47.1
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 3.1e-10 69.3 68 48.5
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 1.2e-09 67.4 69 42.0
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 5.8e-09 65.1 69 46.4
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 2.9e-08 62.8 88 40.9
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 2.1e-06 56.6 55 47.3


User provided reference genes

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