Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G13190 Arabidopsis lyrata HOM05D004673 ORTHO05D005596 7.4e-95 350.9 228 100.0
AL6G41120 Arabidopsis lyrata HOM05D000426 ORTHO05D005596 3.4e-15 86.3 109 55.0
COL.COLO4_13601 Corchorus olitorius HOM05D000750 ORTHO05D000714 3.7e-14 82.8 56 66.1
Carub.0006s3213 Capsella rubella HOM05D004673 ORTHO05D005596 5.4e-13 79.0 137 43.1
A03p33470 Brassica napus HOM05D004673 ORTHO05D005596 1.7e-11 73.9 45 77.8
BraA03t12522Z Brassica rapa HOM05D004673 ORTHO05D005596 1.7e-11 73.9 45 77.8
Carub.0003s0318 Capsella rubella HOM05D004673 ORTHO05D005596 3.9e-11 72.8 48 70.8
C03p40670 Brassica napus HOM05D004673 ORTHO05D005596 5.1e-11 72.4 44 77.3
BolC3t16332H Brassica oleracea HOM05D004673 ORTHO05D005596 5.1e-11 72.4 44 77.3
CARHR253220 Cardamine hirsuta HOM05D004673 ORTHO05D005596 5.1e-11 72.4 49 73.5
Thhalv10027711m.g Eutrema salsugineum HOM05D004673 ORTHO05D005596 5.1e-11 72.4 49 71.4
CARHR253250 Cardamine hirsuta HOM05D004673 ORTHO05D005596 1.1e-10 71.2 50 72.0
Thhalv10027707m.g Eutrema salsugineum HOM05D004673 ORTHO05D005596 9.5e-10 68.2 44 70.5
AT4G04220 Arabidopsis thaliana HOM05D004673 ORTHO05D005596 1.6e-09 67.4 53 66.0
CARHR078050 Cardamine hirsuta HOM05D004673 ORTHO05D005596 1.6e-09 67.4 49 69.4
Aa31LG5G14520 Aethionema arabicum HOM05D004673 ORTHO05D005596 2.8e-09 66.6 42 69.0
BcaB04g19351 Brassica carinata HOM05D004673 ORTHO05D005596 6.2e-09 65.5 43 72.1
CARHR253370 Cardamine hirsuta HOM05D004673 ORTHO05D005596 1.1e-08 64.7 41 75.6
MELO3C015571.2 Cucumis melo HOM05D004673 ORTHO05D005596 1.4e-08 64.3 43 67.4
CsaV3_1G041610 Cucumis sativus L. HOM05D004673 ORTHO05D005596 1.4e-08 64.3 43 67.4
THA.LOC104821143 Tarenaya hassleriana HOM05D004673 ORTHO05D005596 1.4e-08 64.3 41 68.3
AL6G47840 Arabidopsis lyrata HOM05D004673 ORTHO05D005596 3.1e-08 63.2 39 76.9
Atru.chr1.2923 Acer truncatum HOM05D004673 ORTHO05D005596 4.0e-08 62.8 43 65.1
Sp3g02900 Schrenkiella parvula HOM05D004673 ORTHO05D005596 4.0e-08 62.8 38 78.9
Ciclev10018053m.g Citrus clementina HOM05D004673 ORTHO05D005596 8.9e-08 61.6 44 65.9
CSS0005892 Camellia sinensis var. sinensis HOM05D004673 ORTHO05D005596 1.2e-07 61.2 43 60.5
Dinv13478 Davidia involucrata HOM05D004673 ORTHO05D005596 1.5e-07 60.8 42 59.5
MBI11_g38090_MAGBIO Magnolia biondii HOM05D004673 ORTHO05D005596 1.5e-07 60.8 43 65.1
COL.COLO4_13600 Corchorus olitorius HOM05D004673 ORTHO05D005596 2.0e-07 60.5 57 47.4
Potri.001G003200 Populus trichocarpa HOM05D004673 ORTHO05D005596 2.0e-07 60.5 44 63.6
Lsat_1_v5_gn_6_55460 Lactuca sativa HOM05D004673 ORTHO05D005596 2.6e-07 60.1 45 55.6
Lsat_1_v5_gn_6_55380 Lactuca sativa HOM05D004673 ORTHO05D005596 3.4e-07 59.7 44 56.8
CARHR253280 Cardamine hirsuta HOM05D004673 ORTHO05D005596 4.4e-07 59.3 40 75.0
ClCG03G014570 Citrullus lanatus HOM05D004673 ORTHO05D005596 4.4e-07 59.3 42 61.9
THA.LOC104813969 Tarenaya hassleriana HOM05D000094 ORTHO05D000455 4.4e-07 59.3 135 31.1
BcaB07g31134 Brassica carinata HOM05D004673 ORTHO05D005596 5.8e-07 58.9 31 80.6
Sed0024334 Sechium edule HOM05D004673 ORTHO05D005596 5.8e-07 58.9 41 63.4
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 7.6e-07 58.5 201 46.3
TWI60G0809 Tripterygium wilfordii HOM05D004673 ORTHO05D005596 1.3e-06 57.8 39 64.1
DCAR_013113 Daucus carota HOM05D004673 ORTHO05D005596 1.7e-06 57.4 46 56.5
QL01p003522 Quercus lobata HOM05D000182 ORTHO05D005596 1.7e-06 57.4 79 38.0
Hma1.2p1_0589F.1_g184830 Hydrangea macrophylla HOM05D004673 ORTHO05D005596 2.2e-06 57.0 42 57.1
Rhsim13G0233200 Rhododendron simsii HOM05D004673 ORTHO05D005596 2.2e-06 57.0 42 57.1
TAR623G1034 Trochodendron aralioides HOM05D004673 ORTHO05D005596 2.2e-06 57.0 43 58.1
BcaC04g22073 Brassica carinata HOM05D000897 ORTHO05D000716 2.9e-06 56.6 149 34.2
Cfa009556 Carpinus fangiana HOM05D004673 ORTHO05D005596 2.9e-06 56.6 42 59.5
QL08p003602 Quercus lobata HOM05D004673 ORTHO05D005596 2.9e-06 56.6 48 58.3
QL08p055485 Quercus lobata HOM05D004673 ORTHO05D005596 3.7e-06 56.2 43 58.1
Peaxi162Scf00705g00063 Petunia axillaris HOM05D004673 ORTHO05D005596 4.9e-06 55.8 40 60.0
QL07p015672 Quercus lobata HOM05D004673 ORTHO05D005596 4.9e-06 55.8 52 51.9
Actinidia16240 Actinidia chinensis HOM05D004673 ORTHO05D005596 6.4e-06 55.5 43 60.5
BraA09t37516Z Brassica rapa HOM05D004673 ORTHO05D005596 6.4e-06 55.5 44 68.2
HanXRQChr13g0405741 Helianthus annuus HOM05D004673 ORTHO05D005596 6.4e-06 55.5 136 30.1
Prupe.7G003900 Prunus persica HOM05D004673 ORTHO05D005596 6.4e-06 55.5 43 58.1
Thecc.05G294400 Theobroma cacao HOM05D004673 ORTHO05D005596 6.4e-06 55.5 48 58.3
QL02p095991 Quercus lobata HOM05D004673 ORTHO05D005596 8.4e-06 55.1 43 58.1


User provided reference genes

Program Settings