Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 4.6e-127 458.0 247 100.0
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.9e-120 436.0 249 95.6
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 3.7e-116 421.8 247 89.5
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 5.3e-115 417.9 248 88.7
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 4.5e-114 414.8 247 86.2
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.6e-106 389.0 247 81.4
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.0e-105 387.1 247 82.2
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 3.8e-105 385.2 246 80.9
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 5.0e-105 384.8 249 79.5
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.1e-104 383.6 246 80.5
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.1e-104 383.6 246 79.3
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 1.9e-104 382.9 246 80.5
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 2.5e-104 382.5 253 81.0
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 2.5e-104 382.5 246 80.1
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 4.2e-104 381.7 246 79.3
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 4.2e-104 381.7 247 80.6
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 9.4e-104 380.6 247 79.8
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.6e-103 379.8 246 78.9
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 2.1e-103 379.4 252 79.0
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 5.2e-102 374.8 246 78.0
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 6.7e-102 374.4 247 82.2
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 6.7e-102 374.4 247 82.2
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 6.7e-102 374.4 247 82.2
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 2.8e-100 369.0 247 81.4
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 7.7e-98 360.9 246 76.4
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.8e-97 358.6 248 76.6
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 4.2e-96 355.1 248 76.2
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 4.7e-87 325.1 245 69.4
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 4.7e-87 325.1 246 68.3
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 2.3e-86 322.8 246 68.3
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 3.0e-86 322.4 246 67.5
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 6.8e-86 321.2 242 69.0
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 8.8e-86 320.9 246 67.1
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.0e-85 319.7 246 66.7
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 3.4e-85 318.9 248 66.5
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 5.7e-85 318.2 246 66.3
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 5.7e-85 318.2 253 66.4
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 7.5e-85 317.8 246 66.7
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 9.8e-85 317.4 245 67.8
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 1.7e-84 316.6 243 65.4
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.7e-84 316.6 250 66.4
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.2e-84 316.2 246 65.0
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 2.8e-84 315.8 246 66.3
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 3.7e-84 315.5 247 67.6
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 3.7e-84 315.5 246 66.7
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 3.7e-84 315.5 244 68.0
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 6.3e-84 314.7 247 66.8
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 6.3e-84 314.7 243 64.2
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 6.3e-84 314.7 246 67.1
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 8.3e-84 314.3 243 67.1
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.1e-83 313.9 246 64.6
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 1.8e-83 313.2 246 66.3
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 1.8e-83 313.2 242 68.2
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.6e-82 310.1 245 65.3
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.6e-82 310.1 246 66.3
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 2.7e-82 309.3 253 64.8
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.7e-82 309.3 245 65.7
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.5e-82 308.9 244 66.0
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.5e-82 308.9 244 66.0
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.5e-82 308.9 245 65.7
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 7.7e-82 307.8 248 66.1
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 1.0e-81 307.4 242 65.3
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.3e-81 307.0 247 66.0
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 3.8e-81 305.4 264 62.5
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 4.2e-80 302.0 255 63.1
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 5.5e-80 301.6 248 64.9
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 5.5e-80 301.6 245 64.9
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 5.5e-80 301.6 247 66.0
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 9.5e-80 300.8 243 64.2
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 1.2e-79 300.4 252 62.3
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 2.1e-79 299.7 254 63.4
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 4.7e-79 298.5 245 64.5
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 4.7e-79 298.5 252 61.9
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 6.1e-79 298.1 246 64.6
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 8.0e-79 297.7 246 64.2
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 8.0e-79 297.7 245 64.1
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 8.0e-79 297.7 252 61.5
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 1.0e-78 297.4 252 62.3
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.0e-78 297.4 246 65.4
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 1.0e-78 297.4 247 64.4
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.8e-78 296.6 246 65.0
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.8e-78 296.6 246 65.0
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.8e-78 296.6 246 65.0
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.8e-78 296.6 246 65.0
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 1.8e-78 296.6 245 64.5
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.2e-78 295.0 246 65.0
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 5.2e-78 295.0 246 63.8
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 5.2e-78 295.0 245 64.1
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 6.8e-78 294.7 246 62.6
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 6.8e-78 294.7 245 64.5
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 6.8e-78 294.7 250 64.0
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.2e-77 293.9 252 61.5
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 1.2e-77 293.9 251 60.6
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 1.2e-77 293.9 246 63.8
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 2.0e-77 293.1 252 62.3
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 4.4e-77 292.0 248 61.7
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 5.7e-77 291.6 252 61.5
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 7.5e-77 291.2 243 60.1
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 1.3e-76 290.4 251 61.0
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 1.3e-76 290.4 249 61.4
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 4.9e-76 288.5 252 60.7
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 3.2e-75 285.8 252 59.5
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 9.2e-75 284.3 251 60.2
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 3.5e-74 282.3 204 68.6
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 2.3e-73 279.6 248 61.3
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 2.5e-72 276.2 313 52.1
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 4.3e-72 275.4 253 58.1
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 5.6e-72 275.0 248 60.1
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 9.5e-72 274.2 239 60.3
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 9.5e-72 274.2 257 58.8
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.6e-71 273.5 253 58.1
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.1e-71 273.1 235 60.9
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 2.1e-71 273.1 246 60.2
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 2.8e-71 272.7 236 62.3
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 3.6e-71 272.3 257 58.8
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.7e-71 271.9 235 60.4
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 4.7e-71 271.9 241 61.4
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 4.7e-71 271.9 231 62.8
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 6.1e-71 271.6 238 59.2
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 4.0e-70 268.9 232 61.6
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.2e-69 267.3 260 56.9
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.5e-69 266.9 321 51.4
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 1.3e-68 263.8 238 58.0
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 6.4e-68 261.5 207 65.7
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.2e-66 257.3 204 63.2
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 4.6e-66 255.4 252 58.3
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.7e-65 253.4 259 55.2
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.6e-64 248.4 231 57.1
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 5.6e-64 248.4 229 59.4
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 9.5e-64 247.7 217 58.5
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 2.3e-62 243.0 251 52.6
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 4.0e-62 242.3 244 53.7
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 4.9e-60 235.3 246 52.0
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 8.3e-60 234.6 237 54.4
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 9.2e-59 231.1 305 46.2
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 5.1e-57 225.3 250 52.8
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 5.1e-57 225.3 243 51.9
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.4e-54 217.2 230 51.3
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.2e-53 214.2 233 51.5
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.2e-52 209.9 147 68.7
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 4.1e-51 205.7 147 67.3
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 1.6e-50 203.8 243 48.1
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 2.5e-48 196.4 136 68.4
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.0e-46 189.1 166 57.8
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 8.9e-46 188.0 214 49.1
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.2e-45 187.6 166 57.8
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 7.1e-43 178.3 259 41.3
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 7.3e-40 168.3 266 41.4
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.6e-39 167.2 112 68.8
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 1.1e-38 164.5 117 69.2
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.2e-37 161.0 201 47.8
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 6.0e-34 148.7 270 37.0
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 8.1e-31 138.3 125 62.4
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 3.4e-29 132.9 263 34.6
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.6e-26 124.0 84 78.6
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.8e-25 120.6 127 57.5
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 4.8e-23 112.5 95 55.8
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 1.4e-22 110.9 95 63.2
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 6.9e-22 108.6 88 54.5
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 2.1e-18 97.1 90 56.7
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 1.9e-16 90.5 110 35.5
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 2.4e-14 83.6 73 60.3
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 4.1e-14 82.8 93 41.9
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 1.0e-12 78.2 73 56.2
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 2.2e-12 77.0 120 44.2
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 1.2e-10 71.2 147 34.0
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 2.3e-09 67.0 128 40.6
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.9e-08 63.9 81 42.0
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 4.3e-08 62.8 79 48.1
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.3e-07 61.2 81 50.6


User provided reference genes

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