Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G12780 Arabidopsis lyrata HOM05D009715 ORTHO05D011857 8.0e-80 300.4 159 100.0
AT3G03170 Arabidopsis thaliana HOM05D009715 ORTHO05D011857 9.4e-73 276.9 159 92.5
Carub.0003s0232 Capsella rubella HOM05D009715 ORTHO05D011857 2.7e-64 248.8 160 87.5
Thhalv10021675m.g Eutrema salsugineum HOM05D009715 ORTHO05D011857 8.0e-64 247.3 161 83.2
BraA01t04588Z Brassica rapa HOM05D009715 ORTHO05D011857 1.5e-62 243.0 159 83.6
C05p63630 Brassica napus HOM05D009715 ORTHO05D011857 6.3e-61 237.7 159 82.4
BraSC90t46709Z Brassica rapa HOM05D009715 ORTHO05D011857 2.7e-59 232.3 159 81.1
A05p44010 Brassica napus HOM05D009715 ORTHO05D011857 4.5e-59 231.5 159 80.5
BcaC01g04409 Brassica carinata HOM05D009715 ORTHO05D011857 1.0e-58 230.3 159 81.8
C03p40500 Brassica napus HOM05D009715 ORTHO05D011857 1.0e-58 230.3 159 81.8
BolC3t16314H Brassica oleracea HOM05D009715 ORTHO05D011857 1.0e-58 230.3 159 81.8
BraA03t12496Z Brassica rapa HOM05D009715 ORTHO05D011857 5.0e-58 228.0 159 81.1
A03p33240 Brassica napus HOM05D009715 ORTHO05D011857 4.2e-57 224.9 159 79.9
BcaNung05520 Brassica carinata HOM05D009715 ORTHO05D011857 6.8e-55 217.6 160 78.1
BcaB04g19372 Brassica carinata HOM05D009715 ORTHO05D011857 2.9e-53 212.2 159 75.5
Sp3g02210 Schrenkiella parvula HOM05D009715 ORTHO05D011857 8.3e-53 210.7 156 74.4
Aa31LG5G13650 Aethionema arabicum HOM05D009715 ORTHO05D011857 2.0e-51 206.1 134 82.1
CARHR077190 Cardamine hirsuta HOM05D009715 ORTHO05D011857 4.7e-48 194.9 159 71.1
BcaC09g47729 Brassica carinata HOM05D009715 ORTHO05D011857 1.8e-47 193.0 159 70.4
BcaC01g04404 Brassica carinata HOM05D009715 ORTHO05D011857 2.3e-47 192.6 159 69.8
A06p26290 Brassica napus HOM05D009715 ORTHO05D011857 8.9e-47 190.7 159 69.8
BNapus_Darmor_BZH_scaffold_162p00050 Brassica napus HOM05D009715 ORTHO05D011857 8.9e-47 190.7 159 69.8
BNapus_Darmor_BZH_scaffold_78p00040 Brassica napus HOM05D009715 ORTHO05D011857 8.9e-47 190.7 159 69.8
BolC1t05842H Brassica oleracea HOM05D009715 ORTHO05D011857 8.9e-47 190.7 159 69.8
BolC5t35032H Brassica oleracea HOM05D009715 ORTHO05D011857 2.3e-42 176.0 152 68.4
THA.LOC104820871 Tarenaya hassleriana HOM05D009715 ORTHO05D011857 1.5e-41 173.3 165 65.5
BcaC05g30526 Brassica carinata HOM05D009715 ORTHO05D011857 2.2e-13 79.7 120 48.3
Lsat_1_v5_gn_3_69461 Lactuca sativa HOM05D002019 ORTHO05D002150 1.3e-08 63.9 40 72.5
Glyma.02G239800 Glycine max HOM05D002019 ORTHO05D002150 1.6e-08 63.5 84 42.9
Cc07_g12670 Coffea canephora HOM05D002019 ORTHO05D002150 2.1e-08 63.2 39 74.4
vmacro20452 Vaccinium macrocarpon HOM05D002019 ORTHO05D002150 2.1e-08 63.2 99 39.4
Glyma.14G209000 Glycine max HOM05D002019 ORTHO05D002150 2.8e-08 62.8 90 38.9
ECA246G2032 Erigeron canadensis HOM05D002019 ORTHO05D002150 4.8e-08 62.0 40 67.5
Nitab4.5_0000091g0300 Nicotiana tabacum HOM05D002019 ORTHO05D002150 4.8e-08 62.0 39 71.8
Peaxi162Scf00521g00028 Petunia axillaris HOM05D002019 ORTHO05D002150 4.8e-08 62.0 39 71.8
HanXRQChr16g0532381 Helianthus annuus HOM05D002019 ORTHO05D002150 8.1e-08 61.2 40 67.5
Solyc03g031890.3 Solanum lycopersicum HOM05D002019 ORTHO05D002150 8.1e-08 61.2 39 69.2
Sopen03g005760 Solanum pennellii HOM05D002019 ORTHO05D002150 8.1e-08 61.2 39 69.2
PGSC0003DMG402024074 Solanum tuberosum HOM05D002019 ORTHO05D002150 8.1e-08 61.2 39 69.2
HanXRQChr15g0485231 Helianthus annuus HOM05D002019 ORTHO05D002150 1.1e-07 60.8 41 70.7
SalBow5G0949 Salvia bowleyana HOM05D002019 ORTHO05D002150 1.1e-07 60.8 50 62.0
Actinidia17154 Actinidia chinensis HOM05D002019 ORTHO05D002150 4.0e-07 58.9 97 39.2
arahy.Tifrunner.gnm1.ann1.TVU1YR Arachis hypogaea HOM05D002019 ORTHO05D002150 4.0e-07 58.9 66 47.0
Glyma.18G045200 Glycine max HOM05D002019 ORTHO05D002150 4.0e-07 58.9 91 39.6
GSVIVG01035279001 Vitis vinifera HOM05D002019 ORTHO05D002150 5.3e-07 58.5 59 54.2
Actinidia40403 Actinidia chinensis HOM05D002019 ORTHO05D002150 6.9e-07 58.2 39 64.1
arahy.Tifrunner.gnm1.ann1.EZ0DFJ Arachis hypogaea HOM05D002019 ORTHO05D002150 6.9e-07 58.2 66 47.0
MSTRG.15624 Avicennia marina HOM05D002019 ORTHO05D002150 6.9e-07 58.2 39 66.7
Oeu012515.1 Olea europaea HOM05D002019 ORTHO05D002150 6.9e-07 58.2 39 66.7
Ah.01g005730 Amaranthus hybridus HOM05D002019 ORTHO05D002150 9.0e-07 57.8 42 64.3
Phvul.006G085800 Phaseolus vulgaris HOM05D002019 ORTHO05D002150 1.2e-06 57.4 39 66.7
arahy.Tifrunner.gnm1.ann1.ZUC4D4 Arachis hypogaea HOM05D002019 ORTHO05D002150 1.5e-06 57.0 90 45.6
Sc12g0010130 Simmondsia chinensis HOM05D002019 ORTHO05D002150 2.0e-06 56.6 39 66.7
Atru.chr1.1979 Acer truncatum HOM05D002019 ORTHO05D002150 2.6e-06 56.2 76 48.7
Medtr3g064350 Medicago truncatula HOM05D002019 ORTHO05D002150 2.6e-06 56.2 113 33.6
arahy.Tifrunner.gnm1.ann1.SQC659 Arachis hypogaea HOM05D002019 ORTHO05D002150 3.4e-06 55.8 91 47.3
Ciclev10026542m.g Citrus clementina HOM05D002019 ORTHO05D002150 3.4e-06 55.8 42 59.5
DCAR_014138 Daucus carota HOM05D002019 ORTHO05D002150 3.4e-06 55.8 76 43.4
TAR629G3490 Trochodendron aralioides HOM05D002019 ORTHO05D002150 3.4e-06 55.8 39 66.7
Nn4g24832 Nelumbo nucifera HOM05D002019 ORTHO05D002150 4.5e-06 55.5 97 36.1
TWI74G0642 Tripterygium wilfordii HOM05D002019 ORTHO05D002150 4.5e-06 55.5 42 59.5
FAN28G0571 Fragaria x ananassa HOM05D002359 ORTHO05D002394 5.8e-06 55.1 121 37.2
VMungo0540G2448 Vigna mungo HOM05D002019 ORTHO05D002150 5.8e-06 55.1 39 64.1
CANSAT56G1675 Cannabis sativa HOM05D002019 ORTHO05D002150 7.6e-06 54.7 52 51.9
Dinv36721 Davidia involucrata HOM05D002019 ORTHO05D002150 7.6e-06 54.7 39 66.7
FAN23G0242 Fragaria x ananassa HOM05D002359 ORTHO05D002394 7.6e-06 54.7 121 38.0
Phvul.008G241900 Phaseolus vulgaris HOM05D002019 ORTHO05D002150 7.6e-06 54.7 97 40.2
RcHm_v2.0_Chr2g0094921 Rosa chinensis HOM05D002359 ORTHO05D002394 7.6e-06 54.7 113 37.2
TAR622G0329 Trochodendron aralioides HOM05D002019 ORTHO05D002150 9.9e-06 54.3 97 40.2


User provided reference genes

Program Settings