Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.8e-261 905.6 535 100.0
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 4.0e-216 755.0 535 84.3
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 7.9e-164 581.3 534 72.7
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 2.0e-151 540.0 555 61.1
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 3.2e-141 506.1 566 62.7
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 1.2e-108 397.9 554 54.7
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 1.2e-108 397.9 554 54.7
Thhalv10022236m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 6.8e-107 392.1 540 54.3
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 2.1e-100 370.5 549 50.8
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 2.1e-100 370.5 549 50.8
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 1.3e-97 361.3 549 51.5
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 1.6e-92 344.4 550 48.0
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 9.0e-51 205.7 307 50.2
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 2.9e-49 200.7 618 34.3
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.2e-47 195.3 601 38.8
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.0e-46 192.2 312 46.2
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 1.1e-45 188.7 637 36.1
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 1.9e-45 188.0 586 36.2
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 7.4e-45 186.0 572 37.8
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 1.1e-43 182.2 398 39.7
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 2.5e-40 171.0 585 34.7
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 1.8e-38 164.9 610 32.6
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 3.9e-38 163.7 260 48.8
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 2.5e-37 161.0 444 37.8
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 2.4e-35 154.5 466 37.1
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 3.1e-35 154.1 471 35.7
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 4.0e-35 153.7 460 34.8
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 1.5e-34 151.8 669 29.7
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 2.6e-34 151.0 203 50.7
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 2.6e-34 151.0 470 36.2
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 4.5e-34 150.2 512 32.6
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 3.2e-32 144.1 511 32.7
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 2.8e-28 131.0 190 48.9
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 2.8e-28 131.0 190 48.9
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 2.0e-26 124.8 253 36.0
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 1.3e-25 122.1 322 33.9
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 2.9e-25 120.9 322 33.5
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 3.8e-25 120.6 270 37.8
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 5.0e-25 120.2 574 31.0
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 1.1e-24 119.0 265 36.2
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 2.5e-24 117.9 263 36.9
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 2.1e-23 114.8 289 35.3
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 2.1e-23 114.8 256 37.1
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 2.7e-23 114.4 252 35.7
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 1.8e-22 111.7 281 38.8
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 3.0e-22 110.9 309 34.6
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 6.7e-22 109.8 316 33.2
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 8.8e-22 109.4 504 29.8
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.1e-21 109.0 460 30.0
BcaB07g32711 Brassica carinata HOM05D004299 ORTHO05D003557 2.5e-21 107.8 161 44.1
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 2.5e-21 107.8 320 33.1
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 4.3e-21 107.1 320 32.2
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 7.4e-21 106.3 253 35.6
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 9.7e-21 105.9 464 30.4
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 9.7e-21 105.9 267 34.8
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 1.7e-20 105.1 496 28.2
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 4.8e-20 103.6 459 29.8
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 4.8e-20 103.6 331 32.6
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.4e-19 102.1 260 30.8
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 2.4e-19 101.3 493 27.6
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 3.1e-19 100.9 378 30.4
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 6.9e-19 99.8 463 32.8
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 9.1e-19 99.4 502 26.5
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.0e-18 98.2 263 30.4
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 2.6e-18 97.8 497 28.6
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 3.4e-18 97.4 459 29.0
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 4.5e-18 97.1 134 41.8
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.5e-18 97.1 275 30.9
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 5.9e-18 96.7 483 29.0
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 5.9e-18 96.7 247 34.0
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 1.0e-17 95.9 235 36.2
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 1.3e-17 95.5 503 28.2
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 1.7e-17 95.1 428 27.3
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 1.7e-17 95.1 203 35.0
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 2.2e-17 94.7 314 32.5
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 3.8e-17 94.0 281 33.8
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 5.0e-17 93.6 292 30.8
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 8.5e-17 92.8 275 30.5
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 1.1e-16 92.4 255 33.7
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.5e-16 91.3 256 30.5
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 2.5e-16 91.3 488 27.5
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 4.2e-16 90.5 476 27.3
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 9.4e-16 89.4 261 34.9
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 2.1e-15 88.2 319 31.7
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 2.7e-15 87.8 243 32.1
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 3.6e-15 87.4 292 32.2
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 6.1e-15 86.7 125 40.0
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 6.1e-15 86.7 479 28.0
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 1.0e-14 85.9 387 28.2
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 1.0e-14 85.9 350 29.7
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 1.4e-14 85.5 191 35.1
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 1.4e-14 85.5 246 31.7
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 1.8e-14 85.1 480 27.3
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 3.9e-14 84.0 507 28.8
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 5.1e-14 83.6 321 27.4
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 5.1e-14 83.6 466 26.2
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 6.7e-14 83.2 237 32.9
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 8.8e-14 82.8 241 34.0
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.1e-13 82.4 310 29.0
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.1e-13 82.4 223 31.4
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 4.4e-13 80.5 287 33.4
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 7.4e-13 79.7 333 28.8
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 9.7e-13 79.3 505 27.5
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 3.7e-12 77.4 490 25.5
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 6.3e-12 76.6 345 29.9
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 8.2e-12 76.3 272 29.0
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 2.4e-11 74.7 251 29.9
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 4.1e-11 73.9 191 29.8
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.1e-11 73.9 305 28.9
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 5.3e-11 73.6 236 33.1
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 1.5e-10 72.0 279 28.7
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 2.0e-10 71.6 560 25.9
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 2.6e-10 71.2 257 28.0
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 4.5e-10 70.5 189 34.4
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.0e-09 69.3 52 59.6
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 1.3e-09 68.9 167 27.5
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 1.3e-09 68.9 233 28.8
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 2.2e-09 68.2 252 28.2
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 2.2e-09 68.2 251 29.1
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.2e-09 68.2 307 30.3
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 3.8e-09 67.4 498 25.5
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 3.8e-09 67.4 270 31.5
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 8.5e-09 66.2 275 30.5
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 1.1e-08 65.9 237 31.6
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 1.1e-08 65.9 174 32.8
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 1.1e-08 65.9 229 28.8
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 1.1e-08 65.9 43 67.4
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 1.9e-08 65.1 526 24.7
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 2.5e-08 64.7 255 26.3
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 2.5e-08 64.7 67 47.8
A10p22240 Brassica napus HOM05D004299 ORTHO05D003557 4.2e-08 63.9 98 49.0
BraA10t44283Z Brassica rapa HOM05D004299 ORTHO05D003557 4.2e-08 63.9 98 49.0
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 9.4e-08 62.8 439 24.6
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 9.4e-08 62.8 231 29.9
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 9.4e-08 62.8 356 22.5
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.2e-07 62.4 56 55.4
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 1.6e-07 62.0 130 39.2
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 6.1e-07 60.1 234 28.6
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 1.0e-06 59.3 322 26.4
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 1.0e-06 59.3 43 60.5
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 1.8e-06 58.5 33 75.8
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 2.3e-06 58.2 39 66.7


User provided reference genes

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