Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G12440 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 6.2e-111 404.1 193 100.0
Carub.0003s0211 Capsella rubella HOM05D004822 ORTHO05D005632 3.5e-90 335.1 253 68.4
Sp3g02040 Schrenkiella parvula HOM05D004822 ORTHO05D005632 3.4e-85 318.5 251 66.9
AT3G02980 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 1.5e-80 303.1 234 67.5
A05p44150 Brassica napus HOM05D004822 ORTHO05D005632 4.8e-79 298.1 247 63.2
BraSC90t46695Z Brassica rapa HOM05D004822 ORTHO05D005632 4.8e-79 298.1 247 63.2
CARHR196360 Cardamine hirsuta HOM05D004822 ORTHO05D005632 3.7e-71 271.9 258 56.6
Carub.0006s1502 Capsella rubella HOM05D004822 ORTHO05D005632 3.1e-70 268.9 258 56.6
Sp6g27330 Schrenkiella parvula HOM05D004822 ORTHO05D005632 5.3e-70 268.1 258 56.2
THA.LOC104820895 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 1.5e-69 266.5 259 56.8
AL6G27820 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 4.5e-69 265.0 258 56.2
Aa31LG11G12780 Aethionema arabicum HOM05D004822 ORTHO05D005632 1.3e-68 263.5 257 55.6
AT5G16800 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 1.3e-68 263.5 258 55.8
THA.LOC104827203 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 1.3e-68 263.5 248 56.9
C09p60280 Brassica napus HOM05D004822 ORTHO05D005632 1.7e-68 263.1 258 55.4
BcaC04g18845 Brassica carinata HOM05D004822 ORTHO05D005632 5.0e-68 261.5 258 55.0
A10p22430 Brassica napus HOM05D004822 ORTHO05D005632 2.5e-67 259.2 258 55.0
BolC3t13414H Brassica oleracea HOM05D004822 ORTHO05D005632 7.9e-66 254.2 256 54.3
C03p09170 Brassica napus HOM05D004822 ORTHO05D005632 1.0e-65 253.8 256 54.3
A03p07960 Brassica napus HOM05D004822 ORTHO05D005632 1.4e-65 253.4 260 53.8
BraA03t10121Z Brassica rapa HOM05D004822 ORTHO05D005632 1.4e-65 253.4 260 53.8
BcaB01g05242 Brassica carinata HOM05D004822 ORTHO05D005632 3.0e-65 252.3 256 53.9
BcaB01g04968 Brassica carinata HOM05D004822 ORTHO05D005632 6.7e-65 251.1 260 53.5
Aa31LG5G13470 Aethionema arabicum HOM05D004822 ORTHO05D005632 8.2e-63 244.2 234 55.1
BolC9t58861H Brassica oleracea HOM05D004822 ORTHO05D005632 4.5e-61 238.4 263 53.2
BraA10t44302Z Brassica rapa HOM05D004822 ORTHO05D005632 3.2e-59 232.3 269 51.7
TWI12G0583 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 2.6e-56 222.6 242 48.3
Duzib177G1199 Durio zibethinus HOM05D004822 ORTHO05D005632 1.7e-55 219.9 240 48.3
COL.COLO4_15238 Corchorus olitorius HOM05D004822 ORTHO05D005632 6.3e-55 218.0 240 47.1
TWI18G0151 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 2.4e-54 216.1 242 47.1
Thecc.05G215800 Theobroma cacao HOM05D004822 ORTHO05D005632 3.5e-53 212.2 240 47.5
Cfa016047 Carpinus fangiana HOM05D004822 ORTHO05D005632 7.7e-53 211.1 246 43.9
Prupe.2G327400 Prunus persica HOM05D004822 ORTHO05D005632 6.5e-52 208.0 245 44.9
Sabra13G0073000 Salix brachista HOM05D004822 ORTHO05D005632 6.5e-52 208.0 243 46.1
Duzib106G0609 Durio zibethinus HOM05D004822 ORTHO05D005632 8.5e-52 207.6 247 44.9
Thhalv10014541m.g Eutrema salsugineum HOM05D004822 ORTHO05D005632 1.5e-51 206.8 223 52.0
RcHm_v2.0_Chr1g0384361 Rosa chinensis HOM05D004822 ORTHO05D005632 1.9e-51 206.5 246 44.7
Manes.09G127500 Manihot esculenta HOM05D004822 ORTHO05D005632 2.5e-51 206.1 243 45.7
Ciclev10021817m.g Citrus clementina HOM05D004822 ORTHO05D005632 3.2e-51 205.7 243 44.4
Atru.chr12.1891 Acer truncatum HOM05D004822 ORTHO05D005632 9.4e-51 204.1 240 43.8
Aqoxy3G02240 Aquilegia oxysepala HOM05D004822 ORTHO05D005632 3.6e-50 202.2 243 45.7
Dinv17249 Davidia involucrata HOM05D004822 ORTHO05D005632 1.0e-49 200.7 255 43.5
Gohir.D08G241600 Gossypium hirsutum HOM05D004822 ORTHO05D005632 2.3e-49 199.5 221 47.1
arahy.Tifrunner.gnm1.ann1.UL380H Arachis hypogaea HOM05D004822 ORTHO05D005632 5.2e-49 198.4 245 42.0
Gohir.A08G221666 Gossypium hirsutum HOM05D004822 ORTHO05D005632 5.2e-49 198.4 221 47.5
Gorai.004G256900 Gossypium raimondii HOM05D004822 ORTHO05D005632 5.2e-49 198.4 221 46.6
Potri.019G050700 Populus trichocarpa HOM05D004822 ORTHO05D005632 5.2e-49 198.4 243 44.0
QL09p023219 Quercus lobata HOM05D004822 ORTHO05D005632 5.2e-49 198.4 236 44.5
GSVIVG01024375001 Vitis vinifera HOM05D004822 ORTHO05D005632 5.2e-49 198.4 231 45.0
CiPaw.05G216100 Carya illinoinensis HOM05D004822 ORTHO05D005632 6.8e-49 198.0 256 41.8
arahy.Tifrunner.gnm1.ann1.TC8PXF Arachis hypogaea HOM05D004822 ORTHO05D005632 1.2e-48 197.2 245 41.6
FvH4_7g34080 Fragaria vesca HOM05D004822 ORTHO05D005632 1.2e-48 197.2 236 44.9
MD07G1309700 Malus domestica HOM05D004822 ORTHO05D005632 1.5e-48 196.8 257 42.0
SGA_v2.0_scaffold44G16902 Striga asiatica HOM05D004822 ORTHO05D005632 1.5e-48 196.8 194 50.5
Cc02_g00190 Coffea canephora HOM05D004822 ORTHO05D005632 2.0e-48 196.4 229 44.1
Migut.F00086 Erythranthe guttata HOM05D004822 ORTHO05D005632 2.0e-48 196.4 256 43.0
CsaV3_2G036410 Cucumis sativus L. HOM05D004822 ORTHO05D005632 2.6e-48 196.1 256 43.0
MELO3C021888.2 Cucumis melo HOM05D004822 ORTHO05D005632 4.4e-48 195.3 256 43.0
Lalb_Chr01g0000881 Lupinus albus HOM05D004822 ORTHO05D005632 4.4e-48 195.3 256 42.6
MD01G1237100 Malus domestica HOM05D004822 ORTHO05D005632 7.5e-48 194.5 243 43.2
Potri.013G079900 Populus trichocarpa HOM05D004822 ORTHO05D005632 7.5e-48 194.5 225 45.8
Hma1.2p1_0649F.1_g195250 Hydrangea macrophylla HOM05D004822 ORTHO05D005632 9.7e-48 194.1 241 43.6
C05p63790 Brassica napus HOM05D000387 ORTHO05D005632 6.3e-47 191.4 112 82.1
Solyc03g097140.3 Solanum lycopersicum HOM05D004822 ORTHO05D005632 8.3e-47 191.0 235 43.4
Peaxi162Scf00516g00674 Petunia axillaris HOM05D004822 ORTHO05D005632 1.4e-46 190.3 246 41.5
PGR042G2086 Punica granatum HOM05D004822 ORTHO05D005632 1.4e-46 190.3 252 42.1
vmacro06525 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 1.8e-46 189.9 242 42.6
Nitab4.5_0000021g0700 Nicotiana tabacum HOM05D004822 ORTHO05D005632 2.4e-46 189.5 255 41.6
Psat2g189120 Pisum sativum HOM05D004822 ORTHO05D005632 2.4e-46 189.5 249 42.6
Sc25g0001230 Simmondsia chinensis HOM05D004822 ORTHO05D005632 5.3e-46 188.3 257 40.9
MSTRG.26924 Avicennia marina HOM05D004822 ORTHO05D005632 7.0e-46 188.0 238 42.9
CANSAT56G1711 Cannabis sativa HOM05D004822 ORTHO05D005632 9.1e-46 187.6 238 41.2
ClCG09G016920 Citrullus lanatus HOM05D004822 ORTHO05D005632 9.1e-46 187.6 236 43.6
Glyma.11G009600 Glycine max HOM05D004822 ORTHO05D005632 1.2e-45 187.2 256 42.6
EL10Ac3g05059 Beta vulgaris HOM05D004822 ORTHO05D005632 1.6e-45 186.8 242 42.6
Dinv29145 Davidia involucrata HOM05D004822 ORTHO05D005632 2.7e-45 186.0 236 42.4
CAN.G1131.24 Capsicum annuum HOM05D004822 ORTHO05D005632 5.9e-45 184.9 235 42.6
Sed0007243 Sechium edule HOM05D004822 ORTHO05D005632 5.9e-45 184.9 248 41.5
TPR.G37975 Trifolium pratense HOM05D004822 ORTHO05D005632 7.7e-45 184.5 243 42.0
Hund09803 Selenicereus undatus HOM05D004822 ORTHO05D005632 1.0e-44 184.1 235 43.4
HanXRQChr08g0231351 Helianthus annuus HOM05D004822 ORTHO05D005632 1.3e-44 183.7 245 41.2
HanXRQChr16g0512131 Helianthus annuus HOM05D004822 ORTHO05D005632 1.3e-44 183.7 245 41.2
CiPaw.06G034300 Carya illinoinensis HOM05D004822 ORTHO05D005632 1.7e-44 183.3 233 41.6
Nitab4.5_0004530g0010 Nicotiana tabacum HOM05D004822 ORTHO05D005632 1.7e-44 183.3 239 41.8
Nitab4.5_0000150g0020 Nicotiana tabacum HOM05D004822 ORTHO05D005632 2.2e-44 183.0 230 42.6
Rhsim03G0222800 Rhododendron simsii HOM05D004822 ORTHO05D005632 2.9e-44 182.6 236 43.6
TAR362G0773 Trochodendron aralioides HOM05D004822 ORTHO05D005632 2.9e-44 182.6 231 41.1
Phvul.002G040700 Phaseolus vulgaris HOM05D004822 ORTHO05D005632 3.8e-44 182.2 232 43.1
Eucgr.K00079 Eucalyptus grandis HOM05D004822 ORTHO05D005632 5.0e-44 181.8 232 41.8
Rhsim09G0213500 Rhododendron simsii HOM05D004822 ORTHO05D005632 5.0e-44 181.8 228 44.3
BolC5t35048H Brassica oleracea HOM05D004822 ORTHO05D005632 6.5e-44 181.4 104 82.7
DCAR_020414 Daucus carota HOM05D004822 ORTHO05D005632 1.5e-43 180.3 241 40.2
ECA232G1387 Erigeron canadensis HOM05D004822 ORTHO05D005632 1.5e-43 180.3 236 41.9
Lalb_Chr19g0140001 Lupinus albus HOM05D004822 ORTHO05D005632 1.5e-43 180.3 236 41.5
Glyma.01G233200 Glycine max HOM05D004822 ORTHO05D005632 2.5e-43 179.5 215 45.1
Medtr5g007400 Medicago truncatula HOM05D004822 ORTHO05D005632 3.2e-43 179.1 249 40.2
Peaxi162Scf00133g00611 Petunia axillaris HOM05D004822 ORTHO05D005632 5.5e-43 178.3 269 36.8
Sed0002247 Sechium edule HOM05D004822 ORTHO05D005632 7.2e-43 177.9 186 49.5
AUR62002079 Chenopodium quinoa HOM05D004822 ORTHO05D005632 2.1e-42 176.4 249 40.6
LjContig00222g0020254 Lotus japonicus HOM05D004822 ORTHO05D005632 2.1e-42 176.4 230 42.6
Ah.04g156230 Amaranthus hybridus HOM05D004822 ORTHO05D005632 3.6e-42 175.6 247 39.3
CSS0024551 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 3.6e-42 175.6 229 42.4
CSS0024699 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 3.6e-42 175.6 229 42.4
PGSC0003DMG400003148 Solanum tuberosum HOM05D004822 ORTHO05D005632 3.6e-42 175.6 261 38.7
Oeu007515.1 Olea europaea HOM05D004822 ORTHO05D005632 1.4e-41 173.7 228 41.2
Haze_00399 Corylus avellana HOM05D004822 ORTHO05D005632 1.5e-40 170.2 194 44.8
BcaC04g18846 Brassica carinata HOM05D004822 ORTHO05D005632 2.0e-40 169.9 123 69.1
SalBow4G2092 Salvia bowleyana HOM05D004822 ORTHO05D005632 7.5e-40 167.9 247 40.5
SalBow4G3298 Salvia bowleyana HOM05D004822 ORTHO05D005632 7.5e-40 167.9 247 40.5
CSS0013609 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 1.7e-39 166.8 233 40.3
CSS0045344 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 4.9e-39 165.2 233 39.9
Sopen03g027880 Solanum pennellii HOM05D004822 ORTHO05D005632 8.3e-39 164.5 290 35.2
HPP92_014856 Vanilla planifolia HOM05D004822 ORTHO05D005632 8.3e-39 164.5 230 38.7
SHI29591 Sapria himalayana HOM05D004822 ORTHO05D005632 1.4e-38 163.7 233 37.8
SEGI_16512 Sequoiadendron giganteum HOM05D004822 ORTHO05D005632 1.4e-38 163.7 243 37.9
Nn1g00175 Nelumbo nucifera HOM05D004822 ORTHO05D005632 9.1e-38 161.0 194 44.8
Actinidia08752 Actinidia chinensis HOM05D004822 ORTHO05D005632 1.6e-37 160.2 189 44.4
unitig_747.g21929 Utricularia gibba HOM05D004822 ORTHO05D005632 3.5e-37 159.1 239 38.1
Nitab4.5_0001108g0050 Nicotiana tabacum HOM05D004822 ORTHO05D005632 4.5e-37 158.7 238 37.8
TAR374G1016 Trochodendron aralioides HOM05D004822 ORTHO05D005632 1.9e-35 153.3 230 38.3
Lj3A886T38 Lonicera japonica HOM05D004822 ORTHO05D005632 4.2e-35 152.1 185 43.2
arahy.Tifrunner.gnm1.ann1.YEB8JM Arachis hypogaea HOM05D004822 ORTHO05D005632 9.5e-35 151.0 233 36.9
Zm00001eb251310 Zea mays HOM05D004822 ORTHO05D005632 8.0e-34 147.9 194 40.7
Lj3g0022054 Lotus japonicus HOM05D004822 ORTHO05D005632 1.4e-33 147.1 220 37.3
ATR0829G204 Amborella trichopoda HOM05D004822 ORTHO05D005632 1.8e-33 146.7 193 39.9
Pp3c19_16350 Physcomitrium patens HOM05D004822 ORTHO05D005632 4.0e-33 145.6 205 38.0
Pp3c21_19030 Physcomitrium patens HOM05D004822 ORTHO05D005632 8.9e-33 144.4 212 36.8
BcaC05g30339 Brassica carinata HOM05D004822 ORTHO05D005632 4.4e-32 142.1 176 50.0
Mapoly0133s0015 Marchantia polymorpha HOM05D004822 ORTHO05D005632 4.4e-32 142.1 232 34.5
Eucgr.H04873 Eucalyptus grandis HOM05D004822 ORTHO05D005632 1.3e-31 140.6 190 41.1
AUR62028196 Chenopodium quinoa HOM05D004822 ORTHO05D005632 2.2e-31 139.8 217 38.2
arahy.Tifrunner.gnm1.ann1.IXL9K3 Arachis hypogaea HOM05D004822 ORTHO05D005632 9.2e-30 134.4 182 40.1
SHI02573 Sapria himalayana HOM05D004822 ORTHO05D005632 9.2e-30 134.4 141 46.1
SMO146G0253 Selaginella moellendorffii HOM05D004822 ORTHO05D005632 1.7e-28 130.2 190 36.8
DCAR_010536 Daucus carota HOM05D004822 ORTHO05D005632 2.3e-28 129.8 235 33.2
Duzib128G1067 Durio zibethinus HOM05D004822 ORTHO05D005632 2.9e-23 112.8 94 56.4
BcaC05g30307 Brassica carinata HOM05D004822 ORTHO05D005632 2.7e-21 106.3 76 72.4
Os02g0694201 Oryza sativa ssp. japonica HOM05D004822 ORTHO05D005632 2.7e-21 106.3 109 45.0
Gorai.013G103600 Gossypium raimondii HOM05D004822 ORTHO05D005632 4.6e-21 105.5 172 39.5
arahy.Tifrunner.gnm1.ann1.KDM1H7 Arachis hypogaea HOM05D004822 ORTHO05D005632 6.0e-21 105.1 228 30.7
arahy.Tifrunner.gnm1.ann1.U456D3 Arachis hypogaea HOM05D004822 ORTHO05D005632 6.6e-20 101.7 217 30.4
Lsat_1_v5_gn_9_47720 Lactuca sativa HOM05D004822 ORTHO05D005632 1.5e-19 100.5 76 63.2
Ca_24437_v3 Cicer arietinum L. HOM05D004822 ORTHO05D005632 2.5e-19 99.8 76 63.2
CDE06G0869 Ceratophyllum demersum HOM05D000380 ORTHO05D000561 5.6e-19 98.6 93 47.3
PGR142G2504 Punica granatum HOM05D004822 ORTHO05D005632 5.2e-17 92.0 177 33.3
CBR_g57081 Chara braunii HOM05D004822 ORTHO05D005632 1.3e-12 77.4 68 52.9
Cre13.g572150 Chlamydomonas reinhardtii HOM05D004822 ORTHO05D005632 6.6e-12 75.1 72 51.4
vmacro22182 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 1.1e-11 74.3 60 56.7


User provided reference genes

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