Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 1.9e-229 798.9 425 100.0
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 7.3e-213 743.8 425 92.2
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 3.4e-210 734.9 427 90.2
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 2.8e-204 715.3 427 87.6
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 5.8e-202 707.6 426 86.4
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 4.9e-201 704.5 426 91.1
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 9.5e-197 690.3 430 85.8
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 1.6e-196 689.5 430 85.8
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 6.2e-196 687.6 431 85.2
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 3.1e-179 632.1 430 79.5
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 4.8e-148 528.5 438 68.5
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 4.4e-141 505.4 325 79.1
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 4.4e-141 505.4 325 79.1
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 9.7e-141 504.2 325 79.4
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 1.8e-139 500.0 267 97.0
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 1.8e-139 500.0 332 75.9
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 3.4e-138 495.7 424 65.3
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 3.4e-138 495.7 325 77.5
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 1.3e-137 493.8 359 70.8
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 3.8e-137 492.3 427 62.5
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 6.5e-137 491.5 414 64.5
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 1.1e-136 490.7 434 61.8
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 2.5e-136 489.6 398 66.8
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 4.2e-136 488.8 328 74.7
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 9.4e-136 487.6 403 66.5
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 1.2e-135 487.3 340 73.5
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 1.2e-135 487.3 426 63.4
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 1.6e-135 486.9 352 73.0
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 2.1e-135 486.5 324 75.6
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 8.0e-135 484.6 382 66.8
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.4e-134 483.8 324 75.0
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 2.3e-134 483.0 428 62.9
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 3.0e-134 482.6 374 68.2
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 3.9e-134 482.3 348 70.4
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 6.7e-134 481.5 340 72.9
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 2.0e-133 479.9 369 67.2
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 3.3e-133 479.2 358 68.4
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 4.4e-133 478.8 368 65.2
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 4.4e-133 478.8 326 74.8
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 5.7e-133 478.4 339 72.9
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 7.4e-133 478.0 326 75.2
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 9.7e-133 477.6 350 70.6
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 1.7e-132 476.9 347 70.0
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 6.3e-132 474.9 345 70.1
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 1.1e-131 474.2 341 70.7
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 1.1e-131 474.2 338 71.6
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 1.8e-131 473.4 333 73.6
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 2.4e-131 473.0 372 65.6
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 3.1e-131 472.6 366 68.0
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 3.1e-131 472.6 359 69.6
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 3.1e-131 472.6 305 77.0
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 4.1e-131 472.2 442 60.6
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 2.0e-130 469.9 289 79.2
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 2.0e-130 469.9 409 62.8
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 3.5e-130 469.2 291 80.8
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 7.7e-130 468.0 378 63.8
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 1.3e-129 467.2 424 62.3
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 1.7e-129 466.8 428 60.7
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 1.7e-129 466.8 426 60.3
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 5.0e-129 465.3 297 79.5
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 6.5e-129 464.9 293 78.2
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 6.5e-129 464.9 299 75.3
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 1.5e-128 463.8 330 72.1
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 6.1e-127 458.4 343 69.4
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 1.8e-126 456.8 392 62.5
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 2.3e-126 456.4 352 64.5
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 5.2e-126 455.3 320 73.1
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 6.7e-126 454.9 343 68.2
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 5.7e-125 451.8 403 60.8
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 5.7e-125 451.8 344 69.5
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 8.2e-124 448.0 357 65.0
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 2.4e-123 446.4 345 66.4
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 9.1e-123 444.5 329 70.2
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 1.0e-121 441.0 420 57.6
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 2.5e-120 436.4 265 80.8
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 2.5e-120 436.4 325 69.2
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 2.5e-120 436.4 376 59.8
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 4.2e-120 435.6 345 65.5
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 4.2e-120 435.6 327 68.8
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 7.2e-120 434.9 294 73.5
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 1.4e-118 430.6 274 77.0
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 5.7e-117 425.2 487 51.5
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 5.7e-117 425.2 280 74.6
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 2.2e-116 423.3 347 65.4
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 2.9e-113 412.9 370 62.2
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 4.7e-111 405.6 357 60.8
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 1.8e-107 393.7 362 58.8
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 2.4e-107 393.3 423 53.4
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 2.0e-106 390.2 366 57.1
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 3.8e-105 386.0 242 77.7
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 2.3e-102 376.7 313 61.7
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 3.7e-100 369.4 350 58.3
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 3.7e-100 369.4 336 60.7
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 9.2e-99 364.8 321 61.7
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 1.2e-98 364.4 386 54.7
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 1.9e-96 357.1 285 64.9
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 2.3e-94 350.1 284 64.1
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 2.8e-87 326.6 239 71.1
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 2.0e-85 320.5 221 75.6
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 2.6e-85 320.1 256 67.2
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 2.2e-84 317.0 319 58.3
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 3.7e-84 316.2 222 71.6
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 6.0e-82 308.9 293 59.7
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 3.9e-81 306.2 305 51.1
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 8.9e-78 295.0 369 48.5
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 6.6e-73 278.9 248 59.7
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 8.7e-73 278.5 197 71.1
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 2.9e-68 263.5 156 80.8
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 9.3e-67 258.5 156 77.6
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 3.6e-63 246.5 147 79.6
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 1.8e-54 217.6 191 66.0
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 5.1e-49 199.5 196 58.2
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 9.7e-40 168.7 137 66.4
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 2.6e-37 160.6 142 66.2
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 2.7e-26 124.0 111 57.7
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 5.1e-25 119.8 110 55.5
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 1.5e-24 118.2 126 52.4
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 4.5e-21 106.7 119 52.1
Cpa.g.c43318 Carica papaya HOM05D006104 ORTHO05D117575 1.8e-17 94.7 255 29.4
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 3.9e-17 93.6 61 73.8
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 9.1e-14 82.4 85 51.8
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 4.2e-11 73.6 157 43.9
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 5.5e-11 73.2 35 94.3
Ca_29260_v3 Cicer arietinum L. HOM05D006104 ORTHO05D149040 7.2e-11 72.8 283 24.0
QL06p034720 Quercus lobata HOM05D000028 ORTHO05D000701 1.4e-06 58.5 265 25.3
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 2.4e-06 57.8 63 50.8


User provided reference genes

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