Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.2e-158 563.1 287 100.0
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 9.8e-129 463.8 299 85.6
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 2.4e-90 336.3 303 68.6
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 9.3e-87 324.3 247 75.3
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 6.4e-80 301.6 294 62.9
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 8.4e-80 301.2 294 62.9
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 1.1e-79 300.8 294 62.6
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 1.1e-79 300.8 294 63.3
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 1.1e-74 284.3 335 55.5
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 6.9e-74 281.6 329 54.7
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 1.2e-73 280.8 335 54.9
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 2.6e-73 279.6 341 54.8
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 2.6e-73 279.6 239 68.6
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 5.8e-73 278.5 342 53.8
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 7.6e-73 278.1 342 53.8
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 3.8e-72 275.8 351 53.6
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 3.8e-72 275.8 351 53.6
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 4.9e-72 275.4 246 66.3
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 1.1e-71 274.2 297 58.9
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 9.3e-71 271.2 325 53.8
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 1.2e-70 270.8 348 52.3
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 1.2e-70 270.8 353 51.0
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.3e-69 267.3 342 53.5
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 1.8e-69 266.9 353 51.6
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 1.8e-69 266.9 353 51.6
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 2.3e-69 266.5 250 66.0
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 3.0e-69 266.2 347 51.0
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 3.9e-69 265.8 330 52.7
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 1.5e-68 263.8 346 50.9
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 7.4e-68 261.5 360 48.9
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 2.2e-67 260.0 322 55.6
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 2.8e-67 259.6 345 51.0
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 2.8e-67 259.6 345 51.0
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 1.8e-66 256.9 346 50.6
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 5.3e-66 255.4 346 50.0
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 3.6e-62 242.7 252 60.7
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 4.5e-49 199.1 228 54.8
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 1.0e-48 198.0 307 48.9
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.2e-48 196.8 284 49.3
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 6.5e-48 195.3 299 46.2
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 1.1e-47 194.5 293 46.8
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 2.7e-46 189.9 230 53.5
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 1.0e-45 188.0 277 50.5
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 1.0e-45 188.0 304 46.7
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 1.4e-45 187.6 301 46.5
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 1.8e-45 187.2 252 53.2
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 1.8e-45 187.2 295 47.1
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 3.0e-45 186.4 289 47.1
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 3.0e-45 186.4 275 45.1
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.0e-45 186.4 306 43.1
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 5.2e-45 185.7 223 51.1
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 5.2e-45 185.7 286 45.8
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 8.8e-45 184.9 243 53.1
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 8.8e-45 184.9 288 47.6
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 2.0e-44 183.7 297 46.8
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 2.0e-44 183.7 297 46.8
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 2.0e-44 183.7 297 45.8
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.6e-44 183.3 285 47.0
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 3.3e-44 183.0 281 47.7
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 4.4e-44 182.6 265 47.5
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 5.7e-44 182.2 307 45.6
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 5.7e-44 182.2 222 54.1
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 5.7e-44 182.2 292 43.8
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 5.7e-44 182.2 298 46.3
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 5.7e-44 182.2 241 53.5
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 7.4e-44 181.8 300 45.3
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 9.7e-44 181.4 220 52.7
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 9.7e-44 181.4 303 45.9
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 9.7e-44 181.4 282 46.5
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 1.3e-43 181.0 230 51.7
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.7e-43 180.6 303 43.2
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 2.2e-43 180.3 302 46.0
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 2.2e-43 180.3 284 46.5
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 2.8e-43 179.9 234 52.1
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 2.8e-43 179.9 225 52.4
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 3.7e-43 179.5 300 47.7
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 4.8e-43 179.1 273 46.9
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 6.3e-43 178.7 252 52.4
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 8.2e-43 178.3 215 51.6
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 8.2e-43 178.3 305 44.6
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 1.1e-42 177.9 289 46.0
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 1.1e-42 177.9 314 43.0
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 2.4e-42 176.8 311 43.1
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 2.4e-42 176.8 296 43.2
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 3.1e-42 176.4 286 45.5
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 3.1e-42 176.4 287 43.6
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 4.1e-42 176.0 235 51.1
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 4.1e-42 176.0 218 53.7
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.1e-42 176.0 218 53.7
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 4.1e-42 176.0 225 54.2
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 4.1e-42 176.0 318 43.4
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 5.3e-42 175.6 263 46.8
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 5.3e-42 175.6 305 43.3
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 7.0e-42 175.3 268 45.1
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 7.0e-42 175.3 301 42.5
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 9.1e-42 174.9 218 53.7
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 1.2e-41 174.5 283 45.9
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 1.2e-41 174.5 224 52.7
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 1.6e-41 174.1 288 44.4
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 1.6e-41 174.1 245 49.8
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 2.6e-41 173.3 262 48.9
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 2.6e-41 173.3 286 44.4
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 3.5e-41 172.9 286 44.8
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 5.9e-41 172.2 342 41.8
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 7.7e-41 171.8 286 45.1
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.3e-40 171.0 278 44.2
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.7e-40 170.6 227 50.2
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 1.7e-40 170.6 293 44.7
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 2.9e-40 169.9 266 47.7
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 3.8e-40 169.5 299 44.1
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 3.8e-40 169.5 219 52.5
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 6.5e-40 168.7 282 45.4
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 8.5e-40 168.3 287 42.5
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.1e-39 167.9 288 45.1
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 1.1e-39 167.9 233 47.6
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.9e-39 167.2 149 63.1
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 1.9e-39 167.2 293 42.0
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.9e-39 167.2 286 45.1
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.5e-39 166.8 250 52.4
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 2.5e-39 166.8 290 45.9
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 7.2e-39 165.2 264 48.5
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 1.2e-38 164.5 299 39.8
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 1.6e-38 164.1 152 61.2
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 3.6e-38 162.9 321 41.1
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 3.6e-38 162.9 288 44.4
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 4.7e-38 162.5 288 43.1
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 6.1e-38 162.2 291 44.7
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.4e-37 161.0 270 43.0
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 1.4e-37 161.0 291 43.3
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 4.0e-37 159.5 287 45.3
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 5.2e-37 159.1 288 44.1
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 5.2e-37 159.1 167 55.1
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 6.8e-37 158.7 290 41.7
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 1.2e-36 157.9 286 44.4
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.0e-36 157.1 272 46.0
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 2.0e-36 157.1 264 45.8
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 2.8e-35 153.3 290 41.0
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 6.3e-35 152.1 297 41.1
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 2.4e-34 150.2 253 43.1
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 7.7e-33 145.2 327 39.8
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 1.5e-31 141.0 288 41.3
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 9.4e-31 138.3 214 50.5
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.0e-29 134.8 327 34.9
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 3.0e-29 133.3 287 37.6
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 5.2e-29 132.5 324 36.7
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.7e-27 127.5 282 38.3
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 8.3e-27 125.2 189 45.5
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 3.1e-26 123.2 266 40.2
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 1.6e-25 120.9 235 41.3
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 3.5e-25 119.8 147 49.7
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 7.2e-23 112.1 105 61.0
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 2.1e-22 110.5 236 39.4
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 6.1e-22 109.0 268 35.8
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 8.0e-22 108.6 236 39.0
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 5.7e-20 102.4 105 58.1
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 7.5e-20 102.1 142 49.3
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 4.9e-19 99.4 224 33.5
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 5.4e-18 95.9 215 38.1
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 2.0e-17 94.0 170 43.5
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 1.7e-16 90.9 245 34.7
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 2.9e-11 73.6 62 54.8
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 2.3e-08 63.9 65 63.1


User provided reference genes

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