Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 9.1e-40 166.4 81 100.0
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 1.2e-39 166.0 81 98.8
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 2.7e-39 164.9 81 97.5
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 1.3e-38 162.5 81 96.3
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 2.3e-38 161.8 81 93.8
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 2.3e-38 161.8 81 95.1
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 5.0e-38 160.6 81 93.8
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 1.1e-37 159.5 81 92.6
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 1.1e-37 159.5 81 92.6
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 1.1e-37 159.5 81 92.6
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 3.2e-37 157.9 81 91.4
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 9.5e-37 156.4 81 92.6
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 2.1e-36 155.2 81 91.4
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 2.8e-36 154.8 81 93.8
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 2.8e-36 154.8 81 91.4
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 4.7e-36 154.1 81 90.1
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 4.7e-36 154.1 81 90.1
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 4.7e-36 154.1 81 90.1
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 1.8e-32 142.1 80 83.8
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 2.4e-32 141.7 79 84.8
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 3.1e-32 141.4 77 84.4
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 5.4e-32 140.6 79 82.3
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 5.4e-32 140.6 75 85.3
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 5.4e-32 140.6 75 85.3
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 7.0e-32 140.2 79 84.8
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.2e-31 139.4 79 84.8
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.2e-31 139.4 79 84.8
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 1.2e-31 139.4 75 84.0
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 1.2e-31 139.4 79 79.7
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.6e-31 139.0 79 83.5
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 1.6e-31 139.0 79 81.0
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 1.6e-31 139.0 79 84.8
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 2.0e-31 138.7 79 81.0
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 2.0e-31 138.7 79 84.8
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 2.0e-31 138.7 79 81.0
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 2.0e-31 138.7 80 83.8
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.7e-31 138.3 80 82.5
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 2.7e-31 138.3 77 83.1
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 4.5e-31 137.5 81 80.2
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 4.5e-31 137.5 75 82.7
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 5.9e-31 137.1 79 81.0
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 5.9e-31 137.1 75 81.3
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 5.9e-31 137.1 80 81.2
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 7.8e-31 136.7 75 85.3
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 7.8e-31 136.7 79 81.0
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 7.8e-31 136.7 75 81.3
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 7.8e-31 136.7 79 82.3
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 7.8e-31 136.7 79 82.3
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 7.8e-31 136.7 75 81.3
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 1.0e-30 136.3 80 82.5
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 1.0e-30 136.3 75 84.0
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 1.3e-30 136.0 79 83.5
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 1.3e-30 136.0 75 82.7
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 1.7e-30 135.6 75 82.7
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 1.7e-30 135.6 75 81.3
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 1.7e-30 135.6 79 79.7
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 2.3e-30 135.2 75 81.3
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 2.3e-30 135.2 78 75.6
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 2.3e-30 135.2 80 81.2
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 2.3e-30 135.2 75 80.0
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 2.3e-30 135.2 79 81.0
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 2.9e-30 134.8 75 81.3
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 2.9e-30 134.8 80 75.0
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 2.9e-30 134.8 75 81.3
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 2.9e-30 134.8 79 82.3
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 2.9e-30 134.8 75 81.3
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 3.8e-30 134.4 75 80.0
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 3.8e-30 134.4 75 81.3
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 6.6e-30 133.7 81 77.8
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 8.6e-30 133.3 80 73.8
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 8.6e-30 133.3 80 75.0
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 8.6e-30 133.3 78 76.9
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 8.6e-30 133.3 75 81.3
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.1e-29 132.9 77 79.2
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 1.1e-29 132.9 75 81.3
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 1.5e-29 132.5 80 77.5
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 1.5e-29 132.5 80 75.0
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 1.5e-29 132.5 80 76.2
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 1.5e-29 132.5 75 81.3
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 1.9e-29 132.1 75 80.0
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 1.9e-29 132.1 79 78.5
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 2.5e-29 131.7 75 77.3
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 2.5e-29 131.7 75 77.3
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 4.3e-29 131.0 74 81.1
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 4.3e-29 131.0 80 77.5
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 4.3e-29 131.0 78 74.4
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 5.6e-29 130.6 79 78.5
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 9.5e-29 129.8 81 74.1
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 9.5e-29 129.8 75 80.0
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 1.6e-28 129.0 75 76.0
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.1e-28 128.6 79 81.0
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 2.1e-28 128.6 79 81.0
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 2.8e-28 128.3 74 85.1
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 4.7e-28 127.5 80 72.5
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.8e-27 125.6 89 67.4
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 1.8e-27 125.6 79 75.9
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 3.4e-26 121.3 69 87.0
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.7e-25 119.0 79 75.9
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 2.9e-25 118.2 92 62.0
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 2.9e-25 118.2 110 56.4
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 4.9e-25 117.5 64 82.8
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.3e-25 116.7 69 81.2
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.8e-24 115.5 61 82.0
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 7.0e-24 113.6 66 80.3
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.7e-23 111.7 70 81.4
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 3.5e-23 111.3 68 76.5
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 3.5e-23 111.3 70 80.0
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 7.8e-23 110.2 64 75.0
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.0e-22 109.8 66 77.3
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 1.3e-22 109.4 62 77.4
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 1.3e-22 109.4 64 75.0
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.3e-22 108.6 62 79.0
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 4.3e-21 104.4 68 72.1
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 7.3e-21 103.6 50 82.0
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 1.2e-20 102.8 49 87.8
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 1.2e-20 102.8 49 87.8
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 1.2e-20 102.8 74 60.8
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 2.8e-20 101.7 73 68.5
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 2.8e-20 101.7 65 75.4
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 3.6e-20 101.3 66 75.8
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 2.3e-19 98.6 62 69.4
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 4.0e-19 97.8 66 74.2
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 1.5e-18 95.9 75 57.3
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 3.4e-18 94.7 50 78.0
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 7.5e-18 93.6 63 69.8
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 9.8e-18 93.2 61 68.9
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 9.8e-18 93.2 61 68.9
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 6.0e-15 84.0 66 60.6
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 6.0e-15 84.0 53 73.6
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 1.2e-12 76.3 35 85.7
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 1.5e-10 69.3 38 73.7
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 1.3e-09 66.2 36 72.2
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 3.7e-09 64.7 65 49.2
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 4.1e-08 61.2 37 81.1
MCO07G551 Micromonas commoda HOM05D005881 ORTHO05D007298 7.1e-08 60.5 71 38.0
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 6.0e-07 57.4 66 40.9
SalBow5G0226 Salvia bowleyana HOM05D005881 ORTHO05D007298 3.0e-06 55.1 67 53.7


User provided reference genes

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