Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 3.5e-179 631.7 365 100.0
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 2.3e-143 512.7 373 81.5
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 1.0e-138 497.3 362 82.3
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 4.4e-134 481.9 354 82.8
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 8.9e-127 457.6 303 91.7
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 1.5e-126 456.8 299 90.0
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 2.0e-126 456.4 300 90.7
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 2.6e-126 456.1 303 90.8
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 7.1e-124 448.0 300 88.3
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 2.1e-123 446.4 300 82.0
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 2.3e-122 443.0 300 89.3
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 1.4e-119 433.7 300 88.0
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 2.9e-117 426.0 299 86.6
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 7.1e-116 421.4 303 85.8
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 1.2e-115 420.6 300 79.3
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 7.1e-108 394.8 300 68.0
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 9.3e-108 394.4 303 74.3
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 7.9e-107 391.3 300 78.0
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.0e-106 389.4 295 66.4
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 3.0e-106 389.4 295 67.1
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 1.1e-105 387.5 300 66.3
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 2.5e-105 386.3 300 65.3
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 3.3e-105 386.0 299 69.6
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 2.1e-104 383.3 299 67.2
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.1e-104 383.3 295 67.1
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 4.8e-104 382.1 299 66.9
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 4.8e-104 382.1 294 67.0
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 8.1e-104 381.3 301 63.1
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 4.0e-103 379.0 301 76.7
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.3e-103 378.6 311 63.7
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.2e-102 377.5 301 64.5
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.5e-102 377.1 299 65.2
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 2.6e-102 376.3 303 63.4
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 3.4e-102 375.9 301 75.7
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.5e-102 375.6 300 64.3
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 5.8e-102 375.2 302 63.2
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 1.0e-101 374.4 299 63.5
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 2.9e-101 372.9 294 76.9
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 2.9e-101 372.9 303 63.4
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.9e-101 372.9 300 63.7
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 2.9e-101 372.9 294 66.0
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 1.4e-100 370.5 302 63.2
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 7.1e-100 368.2 294 65.0
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 7.1e-100 368.2 294 75.9
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 1.2e-99 367.5 297 64.6
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.2e-99 367.5 296 63.9
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.6e-99 367.1 304 64.5
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 2.1e-99 366.7 301 64.5
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 3.5e-99 365.9 302 64.6
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 3.5e-99 365.9 301 64.1
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.6e-99 365.5 300 63.0
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 7.9e-99 364.8 298 63.4
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 1.3e-98 364.0 295 65.4
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 2.3e-98 363.2 299 61.2
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 3.9e-98 362.5 304 61.2
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 1.9e-97 360.1 301 61.8
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 4.3e-97 359.0 290 64.1
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 7.4e-97 358.2 298 61.7
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 9.6e-97 357.8 306 59.8
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 2.8e-96 356.3 303 60.1
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 3.7e-96 355.9 295 61.7
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 1.4e-95 354.0 298 64.4
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 1.8e-95 353.6 300 61.0
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.8e-95 353.6 303 62.4
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 2.4e-95 353.2 300 60.0
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 3.1e-95 352.8 296 72.0
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 9.0e-95 351.3 298 62.4
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.5e-94 350.5 303 62.4
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.4e-94 349.4 303 60.7
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 5.8e-94 348.6 295 60.3
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 7.6e-94 348.2 345 55.7
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 1.0e-93 347.8 246 90.7
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.7e-93 347.1 305 71.5
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.2e-93 346.7 295 60.0
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 2.2e-93 346.7 300 60.3
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.9e-93 346.3 299 61.9
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 3.8e-93 345.9 302 70.5
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 3.8e-93 345.9 320 70.0
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.0e-93 345.5 299 61.5
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 1.9e-92 343.6 301 59.5
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.9e-92 343.6 299 63.2
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.5e-92 343.2 299 61.5
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 3.2e-92 342.8 301 63.1
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 4.2e-92 342.4 299 57.9
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 4.2e-92 342.4 295 63.4
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 5.5e-92 342.0 292 61.3
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 9.3e-92 341.3 295 59.7
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 1.6e-91 340.5 321 57.9
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 2.7e-91 339.7 243 85.2
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 3.5e-91 339.3 294 60.2
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 6.1e-91 338.6 294 60.2
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 5.1e-90 335.5 299 58.9
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 1.9e-89 333.6 309 65.4
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 2.5e-89 333.2 296 60.1
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 5.7e-89 332.0 299 61.5
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 7.4e-89 331.6 293 60.1
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 9.7e-89 331.3 304 58.2
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 9.7e-89 331.3 304 58.2
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 9.7e-89 331.3 314 57.6
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 2.2e-88 330.1 301 59.8
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.7e-88 329.3 299 58.5
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 4.8e-88 328.9 299 57.5
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 4.8e-88 328.9 299 58.5
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 6.3e-88 328.6 304 57.2
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 1.1e-87 327.8 297 59.9
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 1.8e-87 327.0 297 59.6
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 2.4e-87 326.6 298 58.1
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 5.3e-87 325.5 297 59.3
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.2e-86 324.3 299 57.9
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 2.0e-86 323.6 302 57.6
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 5.9e-86 322.0 294 57.5
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 7.7e-86 321.6 295 56.3
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.0e-85 321.2 299 55.2
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 5.0e-85 318.9 302 57.0
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 8.5e-85 318.2 301 61.5
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.1e-84 317.8 294 59.5
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 1.4e-84 317.4 296 57.4
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 7.2e-84 315.1 243 81.1
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 6.1e-83 312.0 295 53.9
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 3.0e-82 309.7 301 55.8
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 3.0e-82 309.7 300 54.3
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 5.1e-82 308.9 295 58.3
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.1e-81 307.8 295 54.2
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 2.0e-81 307.0 299 51.8
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 1.3e-80 304.3 297 52.9
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 8.2e-80 301.6 260 61.2
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 1.1e-79 301.2 300 55.0
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 6.9e-79 298.5 296 52.0
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 9.1e-79 298.1 295 53.2
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.0e-77 294.7 310 63.9
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 8.5e-77 291.6 378 55.3
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 7.2e-76 288.5 300 51.7
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.1e-75 287.0 309 54.0
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 1.0e-74 284.6 297 54.2
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 3.9e-74 282.7 243 58.8
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 8.8e-74 281.6 296 51.4
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 6.3e-72 275.4 250 56.4
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 8.2e-72 275.0 260 58.1
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 3.1e-71 273.1 298 52.0
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 9.1e-71 271.6 295 48.8
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 1.2e-70 271.2 245 60.0
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 5.9e-70 268.9 297 54.9
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.0e-69 268.1 295 48.8
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 2.2e-69 266.9 294 48.6
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 5.5e-68 262.3 226 61.9
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 7.2e-68 261.9 294 45.9
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 1.4e-66 257.7 276 48.9
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 6.7e-66 255.4 239 57.7
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 4.0e-58 229.6 303 46.9
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 3.4e-57 226.5 303 43.6
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 5.7e-57 225.7 294 42.2
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 3.1e-55 219.9 292 39.0
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.2e-53 213.8 188 58.5
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-50 204.5 119 78.2
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 2.0e-49 200.7 126 77.0
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 8.3e-48 195.3 294 38.1
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 5.7e-41 172.6 291 40.5
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 2.9e-40 170.2 99 80.8
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 5.4e-39 166.0 229 43.7
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 1.5e-36 157.9 113 75.2
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.8e-35 153.7 227 42.3
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.9e-31 141.0 227 37.4
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.2e-31 140.2 84 78.6
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 3.0e-29 133.7 102 62.7
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 4.7e-27 126.3 228 39.5
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.8e-26 122.5 90 67.8
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.0e-25 120.9 90 65.6
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.7e-24 117.9 90 68.9
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 8.6e-21 105.5 64 71.9
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 7.3e-20 102.4 60 81.7
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 3.6e-19 100.1 54 74.1
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.3e-18 97.4 57 75.4
BcaC04g19837 Brassica carinata HOM05D004699 ORTHO05D092684 4.6e-14 83.2 55 74.5
BcaC02g08746 Brassica carinata HOM05D002049 ORTHO05D004501 7.8e-14 82.4 56 71.4
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 5.1e-13 79.7 102 33.3
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 1.6e-11 74.7 110 39.1
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 1.1e-10 72.0 45 80.0
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 1.7e-08 64.7 142 32.4
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 4.9e-08 63.2 76 55.3


User provided reference genes

Program Settings