Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G11540 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 2.6e-209 731.9 379 100.0
AT3G02270 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 3.6e-155 552.0 347 81.6
Thhalv10016297m.g Eutrema salsugineum HOM05D004145 ORTHO05D004879 1.9e-124 449.9 345 71.0
Sp4g17260 Schrenkiella parvula HOM05D004145 ORTHO05D004879 7.4e-124 448.0 345 70.7
Aa31sc654G10 Aethionema arabicum HOM05D004145 ORTHO05D004879 6.9e-122 441.4 345 70.4
Carub.0004s1666 Capsella rubella HOM05D004145 ORTHO05D004879 2.0e-121 439.9 345 68.7
BolC4t22972H Brassica oleracea HOM05D004145 ORTHO05D004879 9.9e-121 437.6 346 68.2
BcaC02g11578 Brassica carinata HOM05D004145 ORTHO05D004879 8.4e-120 434.5 346 67.6
A05p10730 Brassica napus HOM05D004145 ORTHO05D004879 8.4e-120 434.5 346 67.6
BcaB02g09494 Brassica carinata HOM05D004145 ORTHO05D004879 1.9e-119 433.3 346 68.2
BraA05t20017Z Brassica rapa HOM05D004145 ORTHO05D004879 3.2e-119 432.6 346 67.3
CARHR129130 Cardamine hirsuta HOM05D004145 ORTHO05D004879 1.2e-118 430.6 345 67.5
AT2G34970 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 4.6e-118 428.7 366 64.2
AL4G30980 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 3.3e-116 422.5 345 66.1
AL7G36090 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 1.2e-113 414.1 340 66.5
C04p13820 Brassica napus HOM05D004145 ORTHO05D004879 2.6e-113 412.9 346 65.6
THA.LOC104805832 Tarenaya hassleriana HOM05D004145 ORTHO05D004879 3.4e-113 412.5 349 66.5
AT4G18300 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 2.5e-111 406.4 340 65.3
Carub.0007s2297 Capsella rubella HOM05D004145 ORTHO05D004879 7.1e-111 404.8 338 66.0
Atru.chr2.638 Acer truncatum HOM05D004145 ORTHO05D004879 7.2e-103 378.3 346 59.2
Ciclev10019027m.g Citrus clementina HOM05D004145 ORTHO05D004879 2.7e-102 376.3 346 60.7
Prupe.6G335900 Prunus persica HOM05D004145 ORTHO05D004879 6.1e-102 375.2 346 59.8
Haze_04291 Corylus avellana HOM05D004145 ORTHO05D004879 8.8e-101 371.3 346 59.2
Manes.09G159400 Manihot esculenta HOM05D004145 ORTHO05D004879 1.1e-100 370.9 344 58.4
ClCG07G016490 Citrullus lanatus HOM05D004145 ORTHO05D004879 1.5e-100 370.5 345 60.0
Gohir.A13G101100 Gossypium hirsutum HOM05D004145 ORTHO05D004879 7.4e-100 368.2 345 59.1
Gohir.D13G104600 Gossypium hirsutum HOM05D004145 ORTHO05D004879 9.7e-100 367.9 345 59.1
Gorai.013G117100 Gossypium raimondii HOM05D004145 ORTHO05D004879 3.7e-99 365.9 345 58.8
QL03p001164 Quercus lobata HOM05D004145 ORTHO05D004879 4.8e-99 365.5 346 59.0
TWI56G0710 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 4.8e-99 365.5 344 57.6
BcaB02g09493 Brassica carinata HOM05D004145 ORTHO05D004879 6.3e-99 365.2 297 67.0
CsaV3_2G004470 Cucumis sativus L. HOM05D004145 ORTHO05D004879 8.2e-99 364.8 345 58.8
TWI12G1275 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 1.4e-98 364.0 344 57.3
CSS0045127 Camellia sinensis var. sinensis HOM05D004145 ORTHO05D004879 1.8e-98 363.6 346 57.8
Cpa.g.sc117.30 Carica papaya HOM05D004145 ORTHO05D004879 1.8e-98 363.6 345 57.7
MELO3C004345.2 Cucumis melo HOM05D004145 ORTHO05D004879 2.4e-98 363.2 345 58.8
Potri.005G045200 Populus trichocarpa HOM05D004145 ORTHO05D004879 2.4e-98 363.2 344 57.6
RcHm_v2.0_Chr6g0273391 Rosa chinensis HOM05D004145 ORTHO05D004879 2.4e-98 363.2 346 59.2
Sed0004488 Sechium edule HOM05D004145 ORTHO05D004879 2.4e-98 363.2 345 58.8
CSS0025723 Camellia sinensis var. sinensis HOM05D004145 ORTHO05D004879 3.1e-98 362.8 346 57.2
MD12G1232500 Malus domestica HOM05D004145 ORTHO05D004879 4.1e-98 362.5 345 58.8
GSVIVG01026774001 Vitis vinifera HOM05D004145 ORTHO05D004879 4.1e-98 362.5 346 58.4
COL.COLO4_36032 Corchorus olitorius HOM05D004145 ORTHO05D004879 5.3e-98 362.1 346 58.4
MD00G1051200 Malus domestica HOM05D004145 ORTHO05D004879 6.9e-98 361.7 346 58.7
Haze_14654 Corylus avellana HOM05D004145 ORTHO05D004879 2.0e-97 360.1 372 55.1
FvH4_2g12670 Fragaria vesca HOM05D004145 ORTHO05D004879 2.6e-97 359.8 342 58.2
Aqoxy2G04020 Aquilegia oxysepala HOM05D004145 ORTHO05D004879 3.4e-97 359.4 345 56.5
FAN27G3237 Fragaria x ananassa HOM05D004145 ORTHO05D004879 4.5e-97 359.0 342 58.2
Nn2g12613 Nelumbo nucifera HOM05D004145 ORTHO05D004879 1.3e-96 357.5 341 57.2
FAN15G1727 Fragaria x ananassa HOM05D004145 ORTHO05D004879 1.7e-96 357.1 341 57.5
PGR004G0092 Punica granatum HOM05D004145 ORTHO05D004879 1.7e-96 357.1 345 55.7
Thecc.05G254300 Theobroma cacao HOM05D004145 ORTHO05D004879 2.2e-96 356.7 345 57.7
Actinidia30923 Actinidia chinensis HOM05D004145 ORTHO05D004879 6.5e-96 355.1 346 56.9
Hma1.2p1_1636F.1_g294830 Hydrangea macrophylla HOM05D004145 ORTHO05D004879 6.5e-96 355.1 345 56.2
SGA_v2.0_scaffold80G25752 Striga asiatica HOM05D004145 ORTHO05D004879 8.5e-96 354.8 345 56.8
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 1.9e-95 353.6 345 55.7
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 9.4e-95 351.3 345 55.4
RcHm_v2.0_Chr2g0129391 Rosa chinensis HOM05D004145 ORTHO05D004879 9.4e-95 351.3 344 56.4
Glyma.03G243100 Glycine max HOM05D004145 ORTHO05D004879 1.2e-94 350.9 345 57.4
PSO017G5505 Papaver somniferum HOM05D004145 ORTHO05D004879 1.2e-94 350.9 341 57.2
MSTRG.2685 Avicennia marina HOM05D004145 ORTHO05D004879 2.1e-94 350.1 341 57.2
Nitab4.5_0000245g0100 Nicotiana tabacum HOM05D004145 ORTHO05D004879 2.7e-94 349.7 345 55.4
vmacro06192 Vaccinium macrocarpon HOM05D004145 ORTHO05D004879 2.7e-94 349.7 361 54.6
AUR62000308 Chenopodium quinoa HOM05D004145 ORTHO05D004879 4.7e-94 349.0 337 55.8
Solyc01g098180.3 Solanum lycopersicum HOM05D004145 ORTHO05D004879 4.7e-94 349.0 345 54.8
Sopen01g041760 Solanum pennellii HOM05D004145 ORTHO05D004879 4.7e-94 349.0 345 54.8
CANSAT54G2505 Cannabis sativa HOM05D004145 ORTHO05D004879 6.1e-94 348.6 346 57.2
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 6.1e-94 348.6 345 55.4
Cc02_g32210 Coffea canephora HOM05D004145 ORTHO05D004879 7.9e-94 348.2 343 56.9
Oeu028497.4 Olea europaea HOM05D004145 ORTHO05D004879 1.0e-93 347.8 364 53.6
VMungo0540G0740 Vigna mungo HOM05D004145 ORTHO05D004879 1.0e-93 347.8 341 58.1
arahy.Tifrunner.gnm1.ann1.Q65QWU Arachis hypogaea HOM05D004145 ORTHO05D004879 1.8e-93 347.1 331 57.4
AUR62006653 Chenopodium quinoa HOM05D004145 ORTHO05D004879 1.8e-93 347.1 337 55.5
Lalb_Chr15g0076981 Lupinus albus HOM05D004145 ORTHO05D004879 6.7e-93 345.1 346 56.1
Migut.H01121 Erythranthe guttata HOM05D004145 ORTHO05D004879 8.8e-93 344.7 346 54.9
CDE05G0178 Ceratophyllum demersum HOM05D004145 ORTHO05D004879 1.5e-92 344.0 346 56.1
Dinv09830 Davidia involucrata HOM05D004145 ORTHO05D004879 1.5e-92 344.0 345 56.8
ECA246G2136 Erigeron canadensis HOM05D004145 ORTHO05D004879 2.6e-92 343.2 346 55.5
Ah.06g195470 Amaranthus hybridus HOM05D004145 ORTHO05D004879 3.3e-92 342.8 340 54.1
HanXRQChr15g0469811 Helianthus annuus HOM05D004145 ORTHO05D004879 4.4e-92 342.4 344 53.5
PSO675G1731 Papaver somniferum HOM05D004145 ORTHO05D004879 5.7e-92 342.0 345 55.7
FAN24G1676 Fragaria x ananassa HOM05D004145 ORTHO05D004879 9.7e-92 341.3 390 51.3
Ca_12868_v3 Cicer arietinum L. HOM05D004145 ORTHO05D004879 1.3e-91 340.9 346 57.5
Lsat_1_v5_gn_6_96941 Lactuca sativa HOM05D004145 ORTHO05D004879 2.2e-91 340.1 349 55.3
Medtr7g115610 Medicago truncatula HOM05D004145 ORTHO05D004879 2.8e-91 339.7 346 57.5
Lj5g0001865 Lotus japonicus HOM05D004145 ORTHO05D004879 3.7e-91 339.3 346 56.6
arahy.Tifrunner.gnm1.ann1.N9EJ2X Arachis hypogaea HOM05D004145 ORTHO05D004879 1.1e-90 337.8 357 54.3
TPR.G33341 Trifolium pratense HOM05D004145 ORTHO05D004879 2.4e-90 336.7 349 55.9
SHI18260 Sapria himalayana HOM05D004145 ORTHO05D004879 3.1e-90 336.3 344 54.9
Sc16g0010400 Simmondsia chinensis HOM05D004145 ORTHO05D004879 6.9e-90 335.1 345 53.3
Glyma.19G240600 Glycine max HOM05D004145 ORTHO05D004879 1.5e-89 334.0 329 57.1
Eucgr.H04421 Eucalyptus grandis HOM05D004145 ORTHO05D004879 2.0e-89 333.6 340 53.2
unitig_748.g8566 Utricularia gibba HOM05D004145 ORTHO05D004879 7.7e-89 331.6 347 52.2
Phvul.006G097200 Phaseolus vulgaris HOM05D004145 ORTHO05D004879 1.3e-88 330.9 329 56.5
EL10Ac4g09963 Beta vulgaris HOM05D004145 ORTHO05D004879 5.0e-88 328.9 366 52.2
Zm00001eb258570 Zea mays HOM05D004145 ORTHO05D004879 6.1e-86 322.0 345 53.0
ATR0564G152 Amborella trichopoda HOM05D004145 ORTHO05D004879 8.0e-86 321.6 345 50.7
DCAR_006415 Daucus carota HOM05D004145 ORTHO05D004879 6.7e-85 318.5 361 51.2
Dinv04277 Davidia involucrata HOM05D004145 ORTHO05D004879 1.1e-84 317.8 310 57.1
Os02g0812400 Oryza sativa ssp. japonica HOM05D004145 ORTHO05D004879 1.1e-84 317.8 346 50.9
Lj9A674T60 Lonicera japonica HOM05D004145 ORTHO05D004879 3.5e-81 306.2 342 50.9
Hund07348 Selenicereus undatus HOM05D004145 ORTHO05D004879 1.3e-80 304.3 459 41.6
RcHm_v2.0_Chr4g0430791 Rosa chinensis HOM05D004145 ORTHO05D004879 2.1e-78 297.0 294 56.1
PSO541G4045 Papaver somniferum HOM05D004145 ORTHO05D004879 1.8e-74 283.9 343 47.5
AagrBONN_evm.TU.Sc2ySwM_228.295 Anthoceros agrestis HOM05D004145 ORTHO05D004879 4.1e-74 282.7 320 48.4
FAN20G3151 Fragaria x ananassa HOM05D004145 ORTHO05D004879 4.1e-74 282.7 342 50.9
Mapoly0056s0115 Marchantia polymorpha HOM05D004145 ORTHO05D004879 1.6e-73 280.8 351 45.3
PSO675G6749 Papaver somniferum HOM05D004145 ORTHO05D004879 5.9e-73 278.9 355 45.6
HPP92_016926 Vanilla planifolia HOM05D004145 ORTHO05D004879 5.9e-73 278.9 333 48.9
SMO356G0330 Selaginella moellendorffii HOM05D004145 ORTHO05D004879 7.7e-73 278.5 341 46.9
Pp3c1_20030 Physcomitrium patens HOM05D004145 ORTHO05D004879 9.4e-71 271.6 338 44.7
FvH4_4g24061 Fragaria vesca HOM05D004145 ORTHO05D004879 9.8e-68 261.5 287 52.3
Rhsim03G0245100 Rhododendron simsii HOM05D004145 ORTHO05D004879 1.3e-67 261.2 330 48.2
FAN17G0778 Fragaria x ananassa HOM05D004145 ORTHO05D004879 2.4e-66 256.9 342 46.5
MBI12_g33070_MAGBIO Magnolia biondii HOM05D004145 ORTHO05D004879 2.1e-62 243.8 247 57.9
PSO339G4752 Papaver somniferum HOM05D004145 ORTHO05D004879 1.4e-61 241.1 335 45.4
Sabra16G0314500 Salix brachista HOM05D004145 ORTHO05D004879 3.1e-58 229.9 273 48.7
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 4.1e-58 229.6 349 37.8
BcaB06g28816 Brassica carinata HOM05D004145 ORTHO05D004879 5.6e-55 219.2 199 65.8
MCO16G505 Micromonas commoda HOM05D004145 ORTHO05D004879 1.6e-54 217.6 303 42.2
FAN07G1263 Fragaria x ananassa HOM05D000016 ORTHO05D004879 1.8e-53 214.2 341 41.9
Cre12.g502200 Chlamydomonas reinhardtii HOM05D004145 ORTHO05D004879 2.9e-51 206.8 360 36.7
Lsat_1_v5_gn_3_33301 Lactuca sativa HOM05D004145 ORTHO05D004879 3.7e-51 206.5 241 48.1
CiPaw.13G133200 Carya illinoinensis HOM05D004145 ORTHO05D004879 1.7e-48 197.6 175 58.9
ECA246G4181 Erigeron canadensis HOM05D004145 ORTHO05D004879 1.2e-46 191.4 330 39.7
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 2.8e-46 190.3 146 65.1
Sabra16G0314400 Salix brachista HOM05D004145 ORTHO05D004879 6.2e-46 189.1 314 40.8
BcaB06g28815 Brassica carinata HOM05D004145 ORTHO05D004879 1.1e-45 188.3 132 68.9
MD17G1228000 Malus domestica HOM05D004145 ORTHO05D004879 1.2e-44 184.9 151 61.6
GSVIVG01032341001 Vitis vinifera HOM05D004145 ORTHO05D004879 1.2e-44 184.9 186 57.0
GSVIVG01032295001 Vitis vinifera HOM05D004145 ORTHO05D004879 6.4e-43 179.1 170 58.8
CBR_g23483 Chara braunii HOM05D004145 ORTHO05D004879 1.7e-40 171.0 355 33.8
Haze_00048 Corylus avellana HOM05D000222 ORTHO05D004879 2.3e-40 170.6 195 52.3
FvH4_4g24260 Fragaria vesca HOM05D004145 ORTHO05D004879 2.8e-38 163.7 254 41.3
Psat0s1551g0280 Pisum sativum HOM05D004145 ORTHO05D004879 3.5e-33 146.7 130 64.6
CARHR178030 Cardamine hirsuta HOM05D004145 ORTHO05D004879 1.7e-32 144.4 113 67.3
Dinv01337 Davidia involucrata HOM05D004145 ORTHO05D004879 3.6e-30 136.7 104 70.2
BolC4t27888H Brassica oleracea HOM05D004145 ORTHO05D004879 4.7e-30 136.3 185 47.0
HPP92_016860 Vanilla planifolia HOM05D004145 ORTHO05D004879 2.2e-27 127.5 137 55.5
TPR.G28883 Trifolium pratense HOM05D004145 ORTHO05D004879 1.1e-26 125.2 99 67.7
SEGI_02297 Sequoiadendron giganteum HOM05D004145 ORTHO05D004879 4.6e-25 119.8 144 45.1
CARHR177970 Cardamine hirsuta HOM05D004145 ORTHO05D004879 1.7e-24 117.9 156 50.6
GSVIVG01032326001 Vitis vinifera HOM05D004145 ORTHO05D004879 3.9e-24 116.7 84 64.3
GSVIVG01032340001 Vitis vinifera HOM05D004145 ORTHO05D004879 8.7e-24 115.5 84 63.1
Psat0s1551g0320 Pisum sativum HOM05D004145 ORTHO05D004879 1.3e-19 101.7 92 56.5
SEGI_16626 Sequoiadendron giganteum HOM05D004145 ORTHO05D004879 7.8e-17 92.4 95 49.5
MBI12_g33072_MAGBIO Magnolia biondii HOM05D004145 ORTHO05D004879 2.3e-16 90.9 64 67.2
TPR.G33351 Trifolium pratense HOM05D004145 ORTHO05D004879 8.7e-16 89.0 73 64.4
GSVIVG01032294001 Vitis vinifera HOM05D004145 ORTHO05D004879 1.1e-13 82.0 64 59.4
TPR.G20882 Trifolium pratense HOM05D004145 ORTHO05D004879 3.5e-09 67.0 45 71.1
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 1.1e-07 62.0 133 33.1
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 7.4e-07 59.3 137 31.4
Psat0s2291g0040 Pisum sativum HOM05D004145 ORTHO05D004879 7.4e-07 59.3 82 39.0
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 9.6e-07 58.9 132 32.6
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 9.6e-07 58.9 132 32.6
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 4.8e-06 56.6 132 30.3
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 6.2e-06 56.2 245 23.7


User provided reference genes

Program Settings