Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G11470 Arabidopsis lyrata HOM05D007258 ORTHO05D008852 2.8e-126 455.3 228 100.0
AT3G02220 Arabidopsis thaliana HOM05D007258 ORTHO05D008852 2.4e-117 425.6 227 95.2
Carub.0003s0134 Capsella rubella HOM05D007258 ORTHO05D008852 3.8e-115 418.3 231 92.6
CARHR076190 Cardamine hirsuta HOM05D007258 ORTHO05D008852 2.4e-106 389.0 231 85.7
Sp3g01290 Schrenkiella parvula HOM05D007258 ORTHO05D008852 1.8e-101 372.9 241 80.5
Thhalv10021265m.g Eutrema salsugineum HOM05D007258 ORTHO05D008852 4.5e-100 368.2 228 84.2
BcaC05g30334 Brassica carinata HOM05D007258 ORTHO05D008852 9.9e-100 367.1 226 85.0
BcaC05g30335 Brassica carinata HOM05D007258 ORTHO05D008852 1.3e-99 366.7 218 86.2
BraA05t23151Z Brassica rapa HOM05D007258 ORTHO05D008852 5.4e-98 361.3 213 86.9
C09p75600 Brassica napus HOM05D007258 ORTHO05D008852 4.6e-97 358.2 192 91.1
BolC5t35098H Brassica oleracea HOM05D007258 ORTHO05D008852 4.6e-97 358.2 192 91.1
A05p45100 Brassica napus HOM05D007258 ORTHO05D008852 7.4e-95 350.9 213 85.0
Aa31LG5G12750 Aethionema arabicum HOM05D007258 ORTHO05D008852 2.2e-91 339.3 226 79.6
THA.LOC104802980 Tarenaya hassleriana HOM05D007258 ORTHO05D008852 6.1e-81 304.7 217 75.6
QL02p066408 Quercus lobata HOM05D007258 ORTHO05D008852 2.0e-68 263.1 180 72.2
Manes.02G057800 Manihot esculenta HOM05D007258 ORTHO05D008852 4.2e-66 255.4 201 66.2
Haze_25378 Corylus avellana HOM05D007258 ORTHO05D008852 7.2e-66 254.6 180 70.0
Gorai.001G208500 Gossypium raimondii HOM05D007258 ORTHO05D008852 9.4e-66 254.2 194 67.0
Lj2g0017705 Lotus japonicus HOM05D007258 ORTHO05D008852 1.2e-65 253.8 193 66.3
CAN.G497.87 Capsicum annuum HOM05D007258 ORTHO05D008852 4.7e-65 251.9 171 73.1
Gohir.D07G187600 Gossypium hirsutum HOM05D007258 ORTHO05D008852 1.0e-64 250.8 194 66.5
Thecc.04G103600 Theobroma cacao HOM05D007258 ORTHO05D008852 1.4e-64 250.4 206 65.0
CSS0017666 Camellia sinensis var. sinensis HOM05D007258 ORTHO05D008852 2.3e-64 249.6 173 69.9
Duzib138G1000 Durio zibethinus HOM05D007258 ORTHO05D008852 2.3e-64 249.6 194 67.0
TPR.G4313 Trifolium pratense HOM05D007258 ORTHO05D008852 3.9e-64 248.8 204 63.7
Cpa.g.sc14.201 Carica papaya HOM05D007258 ORTHO05D008852 6.7e-64 248.1 196 66.3
Psat1g066400 Pisum sativum HOM05D007258 ORTHO05D008852 6.7e-64 248.1 191 65.4
CiPaw.03G085000 Carya illinoinensis HOM05D007258 ORTHO05D008852 8.8e-64 247.7 172 71.5
Medtr6g015855 Medicago truncatula HOM05D007258 ORTHO05D008852 8.8e-64 247.7 212 60.4
PGSC0003DMG400001370 Solanum tuberosum HOM05D007258 ORTHO05D008852 8.8e-64 247.7 174 70.1
Lalb_Chr21g0318311 Lupinus albus HOM05D007258 ORTHO05D008852 1.1e-63 247.3 192 65.1
Hma1.2p1_0069F.1_g037420 Hydrangea macrophylla HOM05D007258 ORTHO05D008852 1.5e-63 246.9 176 68.8
Solyc02g089100.3 Solanum lycopersicum HOM05D007258 ORTHO05D008852 1.5e-63 246.9 171 70.8
SGA_v2.0_scaffold148G36428 Striga asiatica HOM05D003455 ORTHO05D004165 2.6e-63 246.1 185 66.5
Ciclev10012686m.g Citrus clementina HOM05D007258 ORTHO05D008852 4.4e-63 245.4 221 61.1
Glyma.13G053500 Glycine max HOM05D007258 ORTHO05D008852 4.4e-63 245.4 219 62.1
Sopen02g033890 Solanum pennellii HOM05D007258 ORTHO05D008852 5.7e-63 245.0 171 70.2
arahy.Tifrunner.gnm1.ann1.GI8EHX Arachis hypogaea HOM05D007258 ORTHO05D008852 9.7e-63 244.2 206 63.6
arahy.Tifrunner.gnm1.ann1.TJ02B2 Arachis hypogaea HOM05D007258 ORTHO05D008852 1.7e-62 243.4 206 63.6
Nitab4.5_0009044g0050 Nicotiana tabacum HOM05D007258 ORTHO05D008852 2.8e-62 242.7 168 70.8
Rhsim08G0075900 Rhododendron simsii HOM05D007258 ORTHO05D008852 4.8e-62 241.9 175 67.4
PGR004G1744 Punica granatum HOM05D007258 ORTHO05D008852 6.3e-62 241.5 176 69.9
Potri.004G116800 Populus trichocarpa HOM05D007258 ORTHO05D008852 8.2e-62 241.1 209 61.7
MD17G1063700 Malus domestica HOM05D007258 ORTHO05D008852 1.1e-61 240.7 167 70.1
unitig_32.g11768 Utricularia gibba HOM05D007258 ORTHO05D008852 1.1e-61 240.7 180 66.1
TWI34G1392 Tripterygium wilfordii HOM05D007258 ORTHO05D008852 1.4e-61 240.4 192 64.6
CANSAT64G1331 Cannabis sativa HOM05D007258 ORTHO05D008852 1.8e-61 240.0 172 69.2
Sabra04G0070300 Salix brachista HOM05D000830 ORTHO05D008852 2.4e-61 239.6 174 67.2
Migut.K01261 Erythranthe guttata HOM05D007258 ORTHO05D008852 4.1e-61 238.8 170 68.8
AUR62009496 Chenopodium quinoa HOM05D007258 ORTHO05D008852 5.3e-61 238.4 173 67.6
Nn4g23475 Nelumbo nucifera HOM05D007258 ORTHO05D008852 9.1e-61 237.7 196 60.7
VMungo0464G1058 Vigna mungo HOM05D007258 ORTHO05D008852 9.1e-61 237.7 220 58.6
Phvul.004G041100 Phaseolus vulgaris HOM05D007258 ORTHO05D008852 1.5e-60 236.9 222 61.7
MELO3C022042.2 Cucumis melo HOM05D007258 ORTHO05D008852 2.0e-60 236.5 170 67.1
Prupe.3G250800 Prunus persica HOM05D007258 ORTHO05D008852 2.0e-60 236.5 167 71.9
CsaV3_5G038620 Cucumis sativus L. HOM05D007258 ORTHO05D008852 2.6e-60 236.1 161 70.8
Cc07_g04400 Coffea canephora HOM05D007258 ORTHO05D008852 4.5e-60 235.3 177 66.7
Sc11g0008720 Simmondsia chinensis HOM05D007258 ORTHO05D008852 4.5e-60 235.3 176 67.6
ECA232G3790 Erigeron canadensis HOM05D007258 ORTHO05D008852 1.3e-59 233.8 169 68.6
Lsat_1_v5_gn_4_173160 Lactuca sativa HOM05D007258 ORTHO05D008852 2.2e-59 233.0 169 69.2
MD17G1063100 Malus domestica HOM05D007258 ORTHO05D008852 6.5e-59 231.5 176 65.9
Ca_20770_v3 Cicer arietinum L. HOM05D000600 ORTHO05D000432 8.5e-59 231.1 156 71.8
Cfa010690 Carpinus fangiana HOM05D007258 ORTHO05D008852 1.5e-58 230.3 138 78.3
Hund16216 Selenicereus undatus HOM05D007258 ORTHO05D008852 1.9e-58 229.9 170 70.6
FvH4_6g46551 Fragaria vesca HOM05D007258 ORTHO05D008852 3.2e-58 229.2 164 70.1
FAN05G4223 Fragaria x ananassa HOM05D000830 ORTHO05D008852 3.2e-58 229.2 164 70.1
GSVIVG01036568001 Vitis vinifera HOM05D007258 ORTHO05D008852 3.2e-58 229.2 168 66.7
FAN02G1393 Fragaria x ananassa HOM05D000830 ORTHO05D008852 1.2e-57 227.3 164 69.5
COL.COLO4_03895 Corchorus olitorius HOM05D007258 ORTHO05D008852 1.6e-57 226.9 139 77.0
Eucgr.L02288 Eucalyptus grandis HOM05D007258 ORTHO05D008852 3.6e-57 225.7 231 56.3
HPP92_001847 Vanilla planifolia HOM05D007258 ORTHO05D008852 3.6e-57 225.7 145 73.8
HanXRQChr09g0264921 Helianthus annuus HOM05D007258 ORTHO05D008852 4.7e-57 225.3 202 60.9
Glyma.19G033200 Glycine max HOM05D007258 ORTHO05D008852 6.1e-57 224.9 157 70.1
MSTRG.15441 Avicennia marina HOM05D007258 ORTHO05D008852 3.9e-56 222.2 164 68.3
EL10Ac2g04457 Beta vulgaris HOM05D007258 ORTHO05D008852 6.7e-56 221.5 196 61.7
RcHm_v2.0_Chr2g0165201 Rosa chinensis HOM05D007258 ORTHO05D008852 6.7e-56 221.5 164 68.3
Sed0003620 Sechium edule HOM05D007258 ORTHO05D008852 1.5e-55 220.3 186 62.9
FAN14G1076 Fragaria x ananassa HOM05D000830 ORTHO05D008852 2.0e-55 219.9 177 65.0
Gohir.A07G181100 Gossypium hirsutum HOM05D007258 ORTHO05D008852 4.4e-55 218.8 194 58.2
Os01g0763000 Oryza sativa ssp. japonica HOM05D007258 ORTHO05D008852 4.4e-55 218.8 176 59.7
Oeu004419.1 Olea europaea HOM05D007258 ORTHO05D008852 4.8e-54 215.3 138 71.7
Aqoxy3G00517 Aquilegia oxysepala HOM05D007258 ORTHO05D008852 2.4e-53 213.0 173 61.3
PSO017G7301 Papaver somniferum HOM05D007258 ORTHO05D008852 1.2e-52 210.7 166 62.7
PSO478G0672 Papaver somniferum HOM05D007258 ORTHO05D008852 1.0e-51 207.6 196 57.1
Haze_03284 Corylus avellana HOM05D007258 ORTHO05D008852 2.2e-51 206.5 172 62.8
Eucgr.I02051 Eucalyptus grandis HOM05D007258 ORTHO05D008852 3.2e-50 202.6 191 60.2
SEGI_41097 Sequoiadendron giganteum HOM05D007258 ORTHO05D008852 3.2e-50 202.6 187 57.2
Zm00001eb152360 Zea mays HOM05D007258 ORTHO05D008852 4.2e-50 202.2 136 66.2
Haze_14398 Corylus avellana HOM05D000041 ORTHO05D000061 2.7e-49 199.5 152 65.8
CDE07G1188 Ceratophyllum demersum HOM05D007258 ORTHO05D008852 1.8e-48 196.8 204 52.5
MD17G1063300 Malus domestica HOM05D007258 ORTHO05D008852 6.8e-48 194.9 113 77.0
TAR374G0815 Trochodendron aralioides HOM05D007258 ORTHO05D008852 2.4e-45 186.4 177 57.6
FAN09G2101 Fragaria x ananassa HOM05D000830 ORTHO05D008852 1.2e-44 184.1 141 68.8
Pp3c24_10 Physcomitrium patens HOM05D007258 ORTHO05D008852 2.3e-40 169.9 160 53.1
MD09G1072600 Malus domestica HOM05D007258 ORTHO05D008852 2.0e-39 166.8 169 51.5
Nitab4.5_0005120g0080 Nicotiana tabacum HOM05D007258 ORTHO05D008852 3.7e-38 162.5 186 52.2
Actinidia17595 Actinidia chinensis HOM05D007258 ORTHO05D008852 5.4e-37 158.7 153 52.9
CDE04G0513 Ceratophyllum demersum HOM05D007258 ORTHO05D008852 2.1e-33 146.7 224 45.1
Atru.BG.153.p Acer truncatum HOM05D007258 ORTHO05D008852 3.4e-31 139.4 84 73.8
CBR_g1012 Chara braunii HOM05D007258 ORTHO05D008852 4.4e-31 139.0 146 47.3
BcaB03g16148 Brassica carinata HOM05D007258 ORTHO05D008852 1.3e-30 137.5 84 77.4
AagrBONN_evm.TU.Sc2ySwM_117.3322 Anthoceros agrestis HOM05D007258 ORTHO05D008852 1.0e-27 127.9 135 45.9
BolC1t05917H Brassica oleracea HOM05D007258 ORTHO05D008852 2.8e-25 119.8 95 70.5
ClCG11G004890 Citrullus lanatus HOM05D007258 ORTHO05D008852 6.8e-24 115.2 67 73.1
vmacro18138 Vaccinium macrocarpon HOM05D007258 ORTHO05D008852 1.2e-20 104.4 89 61.8
SEGI_23358 Sequoiadendron giganteum HOM05D007258 ORTHO05D008852 4.3e-18 95.9 117 48.7
Lsat_1_v5_gn_4_141000 Lactuca sativa HOM05D007258 ORTHO05D008852 2.6e-15 86.7 63 63.5
ATR0037G004 Amborella trichopoda HOM05D007258 ORTHO05D008852 3.7e-14 82.8 51 68.6
Actinidia26259 Actinidia chinensis HOM05D007258 ORTHO05D008852 1.9e-13 80.5 75 56.0
ATR0037G029 Amborella trichopoda HOM05D007258 ORTHO05D008852 2.7e-12 76.6 63 68.3
Lsat_1_v5_gn_7_113001 Lactuca sativa HOM05D007258 ORTHO05D008852 6.0e-12 75.5 62 59.7
Migut.I00106 Erythranthe guttata HOM05D007258 ORTHO05D008852 3.1e-08 63.2 40 65.0
MCO01G001 Micromonas commoda HOM05D007258 ORTHO05D008852 8.4e-06 55.1 59 40.7


User provided reference genes

Program Settings