Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G11360 Arabidopsis lyrata HOM05D012214 ORTHO05D001736 2.8e-147 525.8 318 100.0
AT3G02125 Arabidopsis thaliana HOM05D012214 ORTHO05D001736 2.9e-128 462.6 315 81.6
Thhalv10022338m.g Eutrema salsugineum HOM05D012214 ORTHO05D001736 6.4e-91 338.6 324 67.9
CARHR076090 Cardamine hirsuta HOM05D012214 ORTHO05D001736 1.5e-84 317.4 330 60.0
Sp3g01190 Schrenkiella parvula HOM05D012214 ORTHO05D001736 3.5e-81 306.2 340 61.5
BcaC05g30326 Brassica carinata HOM05D012214 ORTHO05D001736 4.6e-81 305.8 313 62.9
A05p44960 Brassica napus HOM05D012214 ORTHO05D001736 8.6e-80 301.6 323 60.1
BraSC197t45807Z Brassica rapa HOM05D012214 ORTHO05D001736 8.6e-80 301.6 323 60.1
BcaC05g30391 Brassica carinata HOM05D012214 ORTHO05D001736 1.0e-72 278.1 312 61.9
C09p75530 Brassica napus HOM05D012214 ORTHO05D001736 1.0e-72 278.1 312 61.9
BolC5t35106H Brassica oleracea HOM05D012214 ORTHO05D001736 1.0e-72 278.1 312 61.9
Carub.0003s0124 Capsella rubella HOM05D012214 ORTHO05D001736 7.3e-71 271.9 317 57.1
THA.LOC104803131 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 1.5e-12 78.2 91 53.8
THA.LOC104821167 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 1.0e-11 75.5 282 36.2
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 1.7e-11 74.7 196 31.6
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 4.2e-10 70.1 60 65.0
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 5.5e-10 69.7 183 32.8
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 5.5e-10 69.7 79 49.4
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 7.2e-10 69.3 60 65.0
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 1.2e-09 68.6 42 78.6
Solyc02g088840.3 Solanum lycopersicum HOM05D003787 ORTHO05D001736 1.6e-09 68.2 51 68.6
Potri.017G094300 Populus trichocarpa HOM05D003787 ORTHO05D001736 3.6e-09 67.0 79 48.1
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 6.1e-09 66.2 276 30.1
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 1.0e-08 65.5 49 69.4
Potri.004G120400 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.4e-08 65.1 71 49.3
SalBow1G3309 Salvia bowleyana HOM05D003787 ORTHO05D001736 1.4e-08 65.1 55 58.2
SalBow1G5677 Salvia bowleyana HOM05D003787 ORTHO05D001736 1.4e-08 65.1 55 58.2
CANSAT64G1049 Cannabis sativa HOM05D003787 ORTHO05D001736 1.8e-08 64.7 41 73.2
SGA_v2.0_scaffold154G37113 Striga asiatica HOM05D003787 ORTHO05D001736 1.8e-08 64.7 41 75.6
Lj2g0021607 Lotus japonicus HOM05D003787 ORTHO05D001736 2.3e-08 64.3 242 28.1
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 3.0e-08 63.9 102 47.1
PGSC0003DMG400001359 Solanum tuberosum HOM05D003787 ORTHO05D001736 3.0e-08 63.9 43 76.7
Phvul.004G037400 Phaseolus vulgaris HOM05D003787 ORTHO05D001736 3.9e-08 63.5 258 27.1
Cpa.g.sc14.178 Carica papaya HOM05D003787 ORTHO05D001736 5.2e-08 63.2 281 31.7
AT5G39200 Arabidopsis thaliana HOM05D011849 ORTHO05D001736 6.7e-08 62.8 211 29.9
Rhsim10G0049700 Rhododendron simsii HOM05D003787 ORTHO05D001736 6.7e-08 62.8 41 70.7
Carub.0007s3672 Capsella rubella HOM05D011849 ORTHO05D001736 8.8e-08 62.4 60 51.7
Cc07_g04250 Coffea canephora HOM05D003787 ORTHO05D001736 8.8e-08 62.4 41 70.7
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 8.8e-08 62.4 70 50.0
MD17G1059900 Malus domestica HOM05D003787 ORTHO05D001736 8.8e-08 62.4 80 47.5
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 1.1e-07 62.0 40 75.0
CARHR263210 Cardamine hirsuta HOM05D011849 ORTHO05D001736 1.1e-07 62.0 178 31.5
FvH4_6g46831 Fragaria vesca HOM05D003787 ORTHO05D001736 1.1e-07 62.0 219 28.8
Glyma.19G030300 Glycine max HOM05D003787 ORTHO05D001736 1.1e-07 62.0 222 29.3
Duzib264G1237 Durio zibethinus HOM05D003787 ORTHO05D001736 1.5e-07 61.6 131 39.7
Eucgr.I02036 Eucalyptus grandis HOM05D003787 ORTHO05D001736 1.5e-07 61.6 231 32.5
Gohir.D11G076900 Gossypium hirsutum HOM05D003787 ORTHO05D001736 1.5e-07 61.6 118 39.8
SGA_v2.0_scaffold148G36413 Striga asiatica HOM05D003787 ORTHO05D001736 1.5e-07 61.6 41 70.7
MSTRG.23883 Avicennia marina HOM05D003787 ORTHO05D001736 2.0e-07 61.2 41 68.3
CiPaw.03G088400 Carya illinoinensis HOM05D003787 ORTHO05D001736 2.0e-07 61.2 59 52.5
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 2.0e-07 61.2 99 45.5
Ciclev10012704m.g Citrus clementina HOM05D003787 ORTHO05D001736 2.6e-07 60.8 61 49.2
MELO3C022033.2 Cucumis melo HOM05D003787 ORTHO05D001736 2.6e-07 60.8 63 55.6
Rhsim08G0075000 Rhododendron simsii HOM05D003787 ORTHO05D001736 2.6e-07 60.8 43 62.8
unitig_899.g15099 Utricularia gibba HOM05D003787 ORTHO05D001736 2.6e-07 60.8 58 50.0
Gorai.007G082600 Gossypium raimondii HOM05D003787 ORTHO05D001736 3.3e-07 60.5 119 39.5
Prupe.3G254700 Prunus persica HOM05D003787 ORTHO05D001736 3.3e-07 60.5 85 45.9
PSO017G1216 Papaver somniferum HOM05D006637 ORTHO05D001736 4.4e-07 60.1 173 40.5
PSO478G3423 Papaver somniferum HOM05D006637 ORTHO05D001736 4.4e-07 60.1 173 40.5
TPR.G10000 Trifolium pratense HOM05D003787 ORTHO05D001736 4.4e-07 60.1 61 50.8
PGSC0003DMG400012377 Solanum tuberosum HOM05D003787 ORTHO05D001736 5.7e-07 59.7 234 30.3
Cfa007670 Carpinus fangiana HOM05D003787 ORTHO05D001736 7.4e-07 59.3 102 43.1
ClCG11G004790 Citrullus lanatus HOM05D003787 ORTHO05D001736 7.4e-07 59.3 260 28.8
Gohir.A11G072600 Gossypium hirsutum HOM05D003787 ORTHO05D001736 7.4e-07 59.3 96 41.7
Sabra04G0069600 Salix brachista HOM05D003787 ORTHO05D001736 7.4e-07 59.3 42 69.0
Sp7g02800 Schrenkiella parvula HOM05D011849 ORTHO05D001736 7.4e-07 59.3 232 28.9
Thhalv10015236m.g Eutrema salsugineum HOM05D034527 ORTHO05D031391 9.7e-07 58.9 69 43.5
MD09G1067000 Malus domestica HOM05D003787 ORTHO05D001736 9.7e-07 58.9 84 42.9
VMungo0464G0106 Vigna mungo HOM05D003787 ORTHO05D001736 9.7e-07 58.9 202 29.2
Atru.chr8.428 Acer truncatum HOM05D003787 ORTHO05D001736 1.3e-06 58.5 241 26.6
Ca_04304_v3 Cicer arietinum L. HOM05D003787 ORTHO05D001736 1.7e-06 58.2 137 32.8
DCAR_025433 Daucus carota HOM05D003787 ORTHO05D001736 1.7e-06 58.2 259 29.3
PGR004G1779 Punica granatum HOM05D003787 ORTHO05D001736 1.7e-06 58.2 261 27.6
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 2.2e-06 57.8 42 71.4
Migut.K01274 Erythranthe guttata HOM05D003787 ORTHO05D001736 2.2e-06 57.8 46 65.2
Gohir.A05G372300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 2.2e-06 57.8 70 48.6
Gorai.012G048600 Gossypium raimondii HOM05D003787 ORTHO05D001736 2.2e-06 57.8 70 48.6
Peaxi162Scf00451g00113 Petunia axillaris HOM05D003787 ORTHO05D001736 2.2e-06 57.8 43 69.8
TWI31G1463 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.2e-06 57.8 41 70.7
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 2.8e-06 57.4 220 30.0
Glyma.13G056300 Glycine max HOM05D003787 ORTHO05D001736 2.8e-06 57.4 67 49.3
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.8e-06 57.4 40 72.5
Manes.01G096200 Manihot esculenta HOM05D003787 ORTHO05D001736 3.7e-06 57.0 91 46.2
Sed0011679 Sechium edule HOM05D003787 ORTHO05D001736 3.7e-06 57.0 65 53.8
AL7G51260 Arabidopsis lyrata HOM05D011849 ORTHO05D001736 4.8e-06 56.6 245 29.4
Medtr6g015240 Medicago truncatula HOM05D003787 ORTHO05D001736 4.8e-06 56.6 120 35.8
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 4.8e-06 56.6 56 58.9
BcaC02g08858 Brassica carinata HOM05D011849 ORTHO05D001736 6.3e-06 56.2 184 28.3
C04p49780 Brassica napus HOM05D011849 ORTHO05D001736 6.3e-06 56.2 184 28.3
BolC4t26569H Brassica oleracea HOM05D011849 ORTHO05D001736 6.3e-06 56.2 184 28.3
BraA04t17188Z Brassica rapa HOM05D011849 ORTHO05D001736 6.3e-06 56.2 232 27.2
CsaV3_5G038510 Cucumis sativus L. HOM05D003787 ORTHO05D001736 6.3e-06 56.2 267 30.0
Nitab4.5_0001637g0040 Nicotiana tabacum HOM05D003787 ORTHO05D001736 6.3e-06 56.2 223 29.1
Nitab4.5_0002960g0050 Nicotiana tabacum HOM05D003787 ORTHO05D001736 6.3e-06 56.2 221 29.4
arahy.Tifrunner.gnm1.ann1.MG99FN Arachis hypogaea HOM05D003787 ORTHO05D001736 8.2e-06 55.8 41 65.9
arahy.Tifrunner.gnm1.ann1.NP9FW8 Arachis hypogaea HOM05D003787 ORTHO05D001736 8.2e-06 55.8 41 65.9
CDE04G2454 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 8.2e-06 55.8 44 68.2
Hma1.2p1_0566F.1_g179820 Hydrangea macrophylla HOM05D003787 ORTHO05D001736 8.2e-06 55.8 76 48.7
SGA_v2.0_scaffold52G19142 Striga asiatica HOM05D003787 ORTHO05D001736 8.2e-06 55.8 219 29.7


User provided reference genes

Program Settings