Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 9.8e-65 250.0 126 100.0
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 4.6e-54 214.5 127 87.4
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 2.9e-53 211.8 126 86.5
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 9.5e-52 206.8 126 84.9
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 2.4e-47 192.2 128 82.0
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 4.6e-38 161.4 109 75.2
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 2.1e-35 152.5 126 66.7
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 3.1e-34 148.7 126 65.1
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 4.0e-34 148.3 126 64.3
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 6.4e-32 141.0 125 64.0
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 6.4e-32 141.0 125 64.0
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 6.4e-32 141.0 125 64.0
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 1.1e-28 130.2 128 60.2
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 6.0e-22 107.8 113 54.0
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.0e-21 107.1 73 72.6
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.0e-21 107.1 73 72.6
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.0e-21 107.1 73 72.6
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 1.1e-20 103.6 93 61.3
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 3.3e-20 102.1 94 59.6
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 1.6e-19 99.8 113 54.9
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 8.1e-19 97.4 117 51.3
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 1.4e-18 96.7 73 64.4
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 1.4e-18 96.7 114 50.9
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 4.0e-18 95.1 112 49.1
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 5.3e-18 94.7 101 54.5
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 5.3e-18 94.7 121 49.6
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 9.0e-18 94.0 116 50.0
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 1.5e-17 93.2 110 50.9
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 2.6e-17 92.4 103 50.5
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 3.4e-17 92.0 70 65.7
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 4.4e-17 91.7 117 52.1
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.7e-16 89.7 70 64.3
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 6.4e-16 87.8 113 47.8
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 1.1e-15 87.0 107 44.9
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 1.9e-15 86.3 62 61.3
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 1.9e-15 86.3 94 51.1
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 1.9e-15 86.3 71 64.8
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 4.2e-15 85.1 112 48.2
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 5.4e-15 84.7 112 44.6
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 5.4e-15 84.7 108 48.1
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 9.3e-15 84.0 87 56.3
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 9.3e-15 84.0 87 56.3
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 1.2e-14 83.6 101 48.5
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 1.2e-14 83.6 116 44.0
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 1.6e-14 83.2 121 47.1
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 1.6e-14 83.2 62 58.1
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 2.1e-14 82.8 108 50.0
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 2.1e-14 82.8 98 51.0
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 2.1e-14 82.8 106 43.4
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 2.7e-14 82.4 121 45.5
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 3.5e-14 82.0 70 62.9
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 6.0e-14 81.3 118 44.9
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 7.9e-14 80.9 112 44.6
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 7.9e-14 80.9 108 47.2
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 1.0e-13 80.5 96 49.0
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 1.0e-13 80.5 100 48.0
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 1.0e-13 80.5 70 55.7
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 1.7e-13 79.7 117 43.6
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 2.3e-13 79.3 122 41.8
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 3.0e-13 79.0 69 58.0
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 3.0e-13 79.0 110 45.5
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.0e-13 79.0 110 45.5
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.0e-13 79.0 110 45.5
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 5.1e-13 78.2 108 49.1
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 6.6e-13 77.8 103 48.5
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 6.6e-13 77.8 110 45.5
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 8.7e-13 77.4 99 51.5
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 8.7e-13 77.4 86 57.0
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 1.1e-12 77.0 102 47.1
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 1.1e-12 77.0 65 60.0
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 1.5e-12 76.6 103 45.6
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 1.9e-12 76.3 66 59.1
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 2.5e-12 75.9 103 47.6
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 2.5e-12 75.9 125 44.0
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 3.3e-12 75.5 72 54.2
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.3e-12 75.5 123 45.5
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 4.3e-12 75.1 95 48.4
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 5.6e-12 74.7 82 52.4
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 5.6e-12 74.7 114 45.6
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 7.4e-12 74.3 96 49.0
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 9.6e-12 73.9 126 40.5
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 1.3e-11 73.6 116 42.2
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 1.3e-11 73.6 84 56.0
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 1.6e-11 73.2 115 47.8
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 1.6e-11 73.2 112 46.4
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 1.1e-10 70.5 57 57.9
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 1.8e-10 69.7 102 41.2
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 2.4e-10 69.3 91 46.2
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 2.4e-10 69.3 106 40.6
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 2.4e-10 69.3 60 56.7
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 3.1e-10 68.9 57 54.4
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 3.1e-10 68.9 71 60.6
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 6.9e-10 67.8 123 43.1
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 1.5e-09 66.6 108 42.6
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 2.0e-09 66.2 79 45.6
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 2.0e-09 66.2 76 50.0
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 1.3e-08 63.5 51 62.7
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 3.8e-08 62.0 65 49.2
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 4.9e-08 61.6 83 43.4
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 4.9e-08 61.6 72 55.6
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 6.4e-08 61.2 58 51.7
ATR0177G043 Amborella trichopoda HOM05D006882 ORTHO05D008688 8.4e-08 60.8 53 58.5
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 8.4e-08 60.8 55 63.6
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 8.4e-08 60.8 83 50.6
CsaV3_5G014380 Cucumis sativus L. HOM05D006882 ORTHO05D008688 1.4e-07 60.1 43 62.8
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 1.4e-07 60.1 51 58.8
Peaxi162Scf00025g00208 Petunia axillaris HOM05D006882 ORTHO05D008688 1.2e-06 57.0 76 52.6


User provided reference genes

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