Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 8.5e-213 743.4 379 100.0
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.0e-198 695.7 379 94.2
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 9.1e-183 643.7 383 88.8
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 7.2e-180 634.0 377 87.0
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 7.0e-175 617.5 387 86.0
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 4.7e-171 604.7 374 85.0
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 1.6e-166 589.7 374 83.7
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 2.7e-166 589.0 375 83.2
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 3.5e-166 588.6 375 83.2
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 1.3e-165 586.6 375 82.9
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 1.7e-165 586.3 380 81.3
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 5.0e-165 584.7 381 81.4
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 5.0e-165 584.7 381 81.4
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 5.6e-164 581.3 367 83.9
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 7.3e-164 580.9 381 80.8
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 7.3e-164 580.9 381 80.8
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 9.5e-164 580.5 381 80.8
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 1.2e-163 580.1 371 81.7
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 6.4e-144 514.6 403 70.7
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 4.2e-127 458.8 377 64.5
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 2.3e-125 453.0 376 66.0
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 1.5e-124 450.3 389 64.0
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 6.2e-123 444.9 384 62.5
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 2.4e-122 443.0 353 65.4
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 4.0e-122 442.2 368 65.2
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 9.0e-122 441.0 373 63.3
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 1.5e-121 440.3 361 65.1
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 4.5e-121 438.7 373 63.8
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 7.6e-121 438.0 353 64.9
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 9.9e-121 437.6 251 88.4
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 1.7e-120 436.8 364 64.3
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 1.7e-120 436.8 381 62.2
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 3.8e-120 435.6 358 64.2
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 6.4e-120 434.9 375 62.7
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 8.4e-120 434.5 384 62.0
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.1e-119 434.1 382 62.8
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 1.4e-119 433.7 370 63.5
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 1.9e-119 433.3 381 61.7
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 3.2e-119 432.6 364 63.5
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 4.2e-119 432.2 380 61.8
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 7.1e-119 431.4 377 61.8
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 1.6e-118 430.3 377 62.6
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 3.5e-118 429.1 369 62.9
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 4.6e-118 428.7 385 61.8
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 6.0e-118 428.3 391 60.9
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 1.0e-117 427.6 379 62.8
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 1.3e-117 427.2 386 58.8
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.3e-117 427.2 371 62.5
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 2.3e-117 426.4 373 63.3
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 3.9e-117 425.6 386 58.8
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 3.9e-117 425.6 375 62.1
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 4.3e-116 422.2 366 62.0
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 5.6e-116 421.8 366 62.8
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 7.4e-116 421.4 409 57.9
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 2.8e-115 419.5 354 63.0
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 4.8e-115 418.7 389 58.9
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 4.8e-115 418.7 359 61.3
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 8.2e-115 417.9 376 61.7
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 8.2e-115 417.9 375 61.6
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 1.1e-114 417.5 347 63.1
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 1.8e-114 416.8 351 63.0
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.4e-114 416.4 372 59.9
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 3.1e-114 416.0 391 57.8
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 4.0e-114 415.6 383 59.8
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 4.0e-114 415.6 391 57.5
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 1.2e-113 414.1 359 61.0
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 1.5e-113 413.7 394 58.6
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 1.5e-113 413.7 361 61.5
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 2.0e-113 413.3 416 56.2
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.6e-113 412.9 389 57.6
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 3.4e-113 412.5 358 61.7
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 7.6e-113 411.4 363 62.3
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 7.6e-113 411.4 363 62.3
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 7.6e-113 411.4 368 60.3
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 7.6e-113 411.4 362 59.7
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 8.4e-112 407.9 360 62.2
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.4e-111 407.1 399 56.6
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 3.2e-111 406.0 359 61.0
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 3.2e-111 406.0 361 60.9
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 4.2e-111 405.6 378 57.1
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 5.5e-111 405.2 388 57.0
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 5.5e-111 405.2 372 60.2
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 5.5e-111 405.2 357 61.3
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 9.3e-111 404.4 288 71.2
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 9.3e-111 404.4 392 56.6
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 9.3e-111 404.4 379 60.7
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 2.7e-110 402.9 361 60.7
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 2.7e-110 402.9 355 60.8
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 2.7e-110 402.9 355 60.8
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 3.5e-110 402.5 388 57.0
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 3.5e-110 402.5 383 58.7
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 4.6e-110 402.1 364 59.9
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 6.0e-110 401.7 386 57.5
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 6.0e-110 401.7 365 60.8
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 7.9e-110 401.4 378 59.0
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 1.3e-109 400.6 377 58.4
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 1.3e-109 400.6 365 60.5
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 1.8e-109 400.2 367 59.4
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 1.8e-109 400.2 391 55.8
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 1.8e-109 400.2 359 61.8
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 2.3e-109 399.8 288 70.5
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 3.9e-109 399.1 365 60.0
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 3.9e-109 399.1 358 60.1
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 3.9e-109 399.1 382 56.3
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 5.1e-109 398.7 355 60.6
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 5.1e-109 398.7 367 59.1
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.1e-108 397.5 368 58.2
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 1.5e-108 397.1 387 57.9
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 1.9e-108 396.7 370 60.0
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 1.9e-108 396.7 385 56.6
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 2.5e-108 396.4 390 55.9
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 2.5e-108 396.4 331 62.8
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 3.3e-108 396.0 378 58.5
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 3.3e-108 396.0 394 56.1
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.6e-107 393.7 368 59.0
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 1.8e-106 390.2 384 56.2
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 4.5e-105 385.6 288 67.7
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 1.0e-104 384.4 340 60.9
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 1.3e-104 384.0 376 53.2
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 1.7e-104 383.6 338 60.4
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 2.2e-104 383.3 372 56.7
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.4e-103 380.6 362 56.4
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 1.4e-103 380.6 368 57.1
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 2.7e-102 376.3 369 56.4
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 7.9e-102 374.8 288 69.1
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 2.3e-101 373.2 366 59.0
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 3.3e-100 369.4 328 60.4
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 5.7e-100 368.6 349 59.0
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.4e-98 363.2 352 56.5
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 6.9e-98 361.7 371 51.2
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 3.2e-95 352.8 291 58.8
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 2.8e-91 339.7 286 60.1
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 4.5e-89 332.4 286 61.2
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 1.4e-87 327.4 366 52.7
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.1e-86 323.6 256 65.6
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 8.2e-83 311.6 288 59.4
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 4.1e-82 309.3 401 45.4
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 2.6e-81 306.6 339 49.9
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 1.7e-80 303.9 171 90.1
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 8.8e-77 291.6 160 91.2
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 9.1e-66 255.0 182 71.4
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 3.3e-55 219.9 291 40.2
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 4.0e-53 213.0 308 39.3
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 6.8e-53 212.2 202 60.4
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 4.7e-38 162.9 253 41.5
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 6.2e-30 136.0 130 61.5
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 4.9e-27 126.3 254 35.4
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 2.4e-18 97.4 64 76.6
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 3.2e-18 97.1 156 40.4
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.6e-17 94.7 110 52.7
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.6e-17 94.7 286 27.3
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 1.7e-16 91.3 73 60.3
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 5.8e-12 76.3 135 40.7


User provided reference genes

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