Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 1.8e-78 296.2 186 100.0
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 6.5e-73 277.7 188 88.8
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 3.2e-64 248.8 185 73.0
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 5.1e-62 241.5 185 72.4
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 3.4e-58 228.8 189 84.1
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 7.7e-58 227.6 191 67.0
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 2.6e-53 212.6 191 67.0
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 2.6e-53 212.6 191 67.0
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 7.4e-53 211.1 191 66.5
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 9.7e-53 210.7 190 64.7
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 9.7e-53 210.7 190 64.7
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 3.7e-52 208.8 193 67.4
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 1.3e-49 200.3 185 62.2
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 8.5e-49 197.6 195 55.9
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 1.4e-48 196.8 181 62.4
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 2.5e-48 196.1 195 55.4
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 2.5e-48 196.1 195 56.4
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 3.7e-44 182.2 212 65.1
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 2.4e-43 179.5 224 55.8
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 3.1e-43 179.1 211 55.0
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 5.2e-38 161.8 193 48.7
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 1.5e-37 160.2 212 62.7
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 3.3e-37 159.1 199 67.3
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 3.8e-33 145.6 233 51.5
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 1.6e-31 140.2 214 55.6
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 3.0e-30 136.0 214 57.9
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 3.7e-28 129.0 158 46.8
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 2.0e-26 123.2 176 42.0
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 3.5e-26 122.5 188 45.2
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 5.9e-26 121.7 155 47.7
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 2.3e-25 119.8 207 43.0
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 2.3e-25 119.8 177 56.5
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 3.8e-25 119.0 198 41.9
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 5.0e-25 118.6 178 40.4
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 8.6e-25 117.9 158 44.3
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 8.6e-25 117.9 190 40.0
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 1.1e-24 117.5 201 42.8
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 1.1e-24 117.5 174 42.5
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 1.1e-24 117.5 193 42.0
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 1.5e-24 117.1 176 43.8
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 5.5e-24 115.2 190 41.6
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 7.2e-24 114.8 195 39.0
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 9.5e-24 114.4 160 53.1
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.2e-23 114.0 151 47.0
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.2e-23 114.0 151 44.4
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 1.6e-23 113.6 162 42.0
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.8e-23 112.8 160 54.4
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 2.8e-23 112.8 165 43.0
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 3.6e-23 112.5 188 52.1
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 4.7e-23 112.1 184 42.9
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.8e-22 110.2 157 46.5
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 1.8e-22 110.2 192 39.6
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 3.0e-22 109.4 154 48.1
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 4.0e-22 109.0 161 38.5
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 5.2e-22 108.6 168 39.3
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 8.9e-22 107.8 160 43.1
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.5e-21 107.1 152 44.7
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.5e-21 107.1 152 44.7
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 1.5e-21 107.1 153 66.0
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 2.0e-21 106.7 155 41.9
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 2.0e-21 106.7 168 50.0
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 3.4e-21 105.9 168 47.0
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 3.4e-21 105.9 204 41.7
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 4.4e-21 105.5 161 41.0
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 7.5e-21 104.8 171 39.2
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 7.5e-21 104.8 152 40.1
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 7.5e-21 104.8 195 40.5
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 7.5e-21 104.8 182 33.0
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 1.3e-20 104.0 189 37.6
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 1.3e-20 104.0 155 40.6
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.3e-20 104.0 167 49.7
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.3e-20 104.0 151 40.4
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 1.3e-20 104.0 178 36.0
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.3e-20 104.0 192 38.0
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 1.7e-20 103.6 155 40.6
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.2e-20 103.2 157 40.1
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 4.9e-20 102.1 157 42.0
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 4.9e-20 102.1 163 47.9
BcaC08g44071 Brassica carinata HOM05D005169 ORTHO05D006436 6.3e-20 101.7 58 86.2
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 6.3e-20 101.7 149 36.2
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 8.3e-20 101.3 151 41.1
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 8.3e-20 101.3 170 38.2
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 1.1e-19 100.9 176 37.5
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 1.4e-19 100.5 196 36.2
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 1.8e-19 100.1 151 51.7
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 2.4e-19 99.8 168 37.5
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.4e-19 99.8 163 45.4
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 2.4e-19 99.8 162 51.9
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 2.4e-19 99.8 160 47.5
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 3.1e-19 99.4 154 46.1
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 3.1e-19 99.4 151 38.4
BcaC04g22405 Brassica carinata HOM05D005169 ORTHO05D006436 7.0e-19 98.2 58 82.8
C09p19720 Brassica napus HOM05D005169 ORTHO05D006436 7.0e-19 98.2 58 82.8
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 1.2e-18 97.4 165 41.8
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 1.2e-18 97.4 179 45.8
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 1.2e-18 97.4 156 35.9
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 1.6e-18 97.1 160 38.1
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 1.6e-18 97.1 151 41.1
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 1.6e-18 97.1 151 41.1
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 1.6e-18 97.1 151 46.4
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 5.9e-18 95.1 163 51.5
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 7.8e-18 94.7 150 38.7
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 2.9e-17 92.8 164 39.6
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 2.9e-17 92.8 154 48.1
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 5.0e-17 92.0 157 35.7
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 8.6e-17 91.3 151 34.4
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 8.6e-17 91.3 162 40.7
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 1.5e-16 90.5 158 36.7
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 2.5e-16 89.7 161 37.3
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 3.3e-16 89.4 172 34.9
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 7.3e-16 88.2 161 44.7
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 9.5e-16 87.8 158 36.7
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 1.2e-15 87.4 142 36.6
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 2.1e-15 86.7 147 49.7
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 3.6e-15 85.9 92 54.3
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 3.6e-15 85.9 92 54.3
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 4.7e-15 85.5 79 49.4
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 5.2e-14 82.0 162 35.8
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 8.9e-14 81.3 155 32.9
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 2.6e-13 79.7 161 33.5
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 3.4e-13 79.3 150 32.7
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 3.4e-13 79.3 159 35.2
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 3.4e-13 79.3 156 34.6
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 4.4e-13 79.0 137 40.9
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 7.5e-13 78.2 176 31.8
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 9.8e-13 77.8 52 61.5
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 7.0e-11 71.6 124 52.4
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 3.5e-10 69.3 75 44.0
HPP92_008039 Vanilla planifolia HOM05D005169 ORTHO05D006436 1.7e-09 67.0 177 33.3
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 1.5e-08 63.9 51 54.9
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 1.6e-07 60.5 47 53.2
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 3.6e-07 59.3 62 59.7
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 4.7e-07 58.9 146 27.4
Zm00001eb157680 Zea mays HOM05D005169 ORTHO05D006436 3.1e-06 56.2 155 28.4
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 3.1e-06 56.2 186 32.3
Zm00001eb158870 Zea mays HOM05D005169 ORTHO05D006436 5.2e-06 55.5 160 27.5


User provided reference genes

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