Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 1.6e-62 242.7 126 100.0
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 7.5e-57 223.8 126 92.1
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 1.1e-55 219.9 124 94.4
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 1.1e-55 219.9 124 94.4
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 1.1e-55 219.9 124 94.4
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 4.1e-55 218.0 124 93.5
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 5.0e-53 211.1 127 89.8
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 3.4e-49 198.4 133 82.0
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 1.6e-46 189.5 132 73.5
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.6e-46 189.5 126 80.2
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 6.0e-46 187.6 127 80.3
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 6.0e-46 187.6 125 82.4
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 2.3e-45 185.7 113 80.5
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 3.0e-45 185.3 128 81.2
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 3.9e-45 184.9 124 83.1
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 3.9e-45 184.9 113 82.3
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 1.1e-44 183.3 110 82.7
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 3.3e-44 181.8 113 81.4
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 7.3e-44 180.6 133 75.9
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 9.5e-44 180.3 121 75.2
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 9.5e-44 180.3 121 76.9
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 9.5e-44 180.3 113 80.5
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 2.1e-43 179.1 110 84.5
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 2.1e-43 179.1 111 82.9
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 2.8e-43 178.7 121 76.0
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 4.7e-43 177.9 111 82.0
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 6.2e-43 177.6 113 77.9
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 8.1e-43 177.2 113 77.0
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 8.1e-43 177.2 113 78.8
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.1e-42 176.8 108 83.3
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 1.4e-42 176.4 113 79.6
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 1.4e-42 176.4 126 71.4
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 2.3e-42 175.6 121 74.4
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 3.1e-42 175.3 132 71.2
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 3.1e-42 175.3 110 80.9
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 4.0e-42 174.9 110 80.9
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 4.0e-42 174.9 113 80.5
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 4.0e-42 174.9 111 80.2
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 5.2e-42 174.5 112 81.2
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 5.2e-42 174.5 113 78.8
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 6.8e-42 174.1 110 78.2
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 6.8e-42 174.1 113 79.6
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 6.8e-42 174.1 113 77.9
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 8.9e-42 173.7 113 78.8
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 8.9e-42 173.7 120 72.5
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.2e-41 173.3 121 74.4
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 1.2e-41 173.3 113 77.0
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 1.2e-41 173.3 123 72.4
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 1.2e-41 173.3 111 80.2
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 1.2e-41 173.3 110 79.1
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 1.5e-41 172.9 120 77.5
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 1.5e-41 172.9 110 77.3
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 2.0e-41 172.6 110 76.4
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 2.0e-41 172.6 110 76.4
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 2.6e-41 172.2 113 77.9
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 3.4e-41 171.8 132 69.7
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 4.4e-41 171.4 105 81.9
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 4.4e-41 171.4 113 77.0
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 4.4e-41 171.4 111 78.4
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 4.4e-41 171.4 132 68.2
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 5.8e-41 171.0 115 75.7
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 5.8e-41 171.0 113 77.9
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 7.5e-41 170.6 115 75.7
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 1.3e-40 169.9 113 76.1
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 1.3e-40 169.9 107 79.4
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 1.7e-40 169.5 110 78.2
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 1.7e-40 169.5 122 71.3
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 1.7e-40 169.5 133 69.2
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 2.9e-40 168.7 132 68.9
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 3.7e-40 168.3 113 77.0
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 3.7e-40 168.3 110 79.1
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.7e-40 168.3 106 80.2
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 3.7e-40 168.3 110 77.3
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 4.9e-40 167.9 111 77.5
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 6.4e-40 167.5 113 77.9
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 8.3e-40 167.2 106 79.2
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 8.3e-40 167.2 106 79.2
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 1.1e-39 166.8 106 79.2
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.1e-39 166.8 106 79.2
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.1e-39 166.8 106 79.2
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.1e-39 166.8 106 79.2
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 1.1e-39 166.8 106 75.5
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 1.9e-39 166.0 111 73.0
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 2.4e-39 165.6 113 74.3
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 2.4e-39 165.6 110 78.2
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 2.4e-39 165.6 111 74.8
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 2.4e-39 165.6 111 77.5
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 2.4e-39 165.6 111 77.5
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.2e-39 165.2 106 79.2
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 3.2e-39 165.2 126 66.7
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 4.1e-39 164.9 110 77.3
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 4.1e-39 164.9 106 76.4
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 7.1e-39 164.1 106 79.2
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 9.2e-39 163.7 113 72.6
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 1.2e-38 163.3 113 74.3
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 2.1e-38 162.5 111 73.9
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 2.7e-38 162.2 111 74.8
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 2.7e-38 162.2 111 74.8
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 3.5e-38 161.8 111 76.6
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.5e-38 161.8 111 76.6
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 4.6e-38 161.4 118 71.2
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 6.0e-38 161.0 131 68.7
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 7.8e-38 160.6 104 75.0
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 1.0e-37 160.2 113 74.3
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 1.3e-37 159.8 118 68.6
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 1.3e-37 159.8 100 82.0
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 1.7e-37 159.5 123 68.3
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 1.7e-37 159.5 132 66.7
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 2.3e-37 159.1 113 74.3
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 3.9e-37 158.3 104 76.9
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 8.6e-37 157.1 107 72.9
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 1.5e-36 156.4 110 70.0
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 2.5e-36 155.6 110 70.9
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 3.6e-35 151.8 117 67.5
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 2.3e-34 149.1 110 69.1
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 1.5e-33 146.4 114 64.9
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 2.0e-33 146.0 119 67.2
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 2.0e-33 146.0 100 76.0
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 4.4e-33 144.8 110 68.2
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 1.1e-31 140.2 110 67.3
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 1.4e-31 139.8 112 67.9
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 9.2e-31 137.1 122 59.8
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 1.7e-29 132.9 91 72.5
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.1e-28 130.2 94 68.1
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 1.2e-25 120.2 121 52.9
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 1.7e-24 116.3 96 66.7
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.6e-22 109.8 70 78.6
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 5.1e-21 104.8 89 69.7
FAN02G3728 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.9e-20 102.8 57 80.7
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 1.3e-19 100.1 112 51.8
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 8.1e-19 97.4 92 53.3
SMO164G0004 Selaginella moellendorffii HOM05D005499 ORTHO05D006666 4.0e-18 95.1 110 47.3
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 6.9e-18 94.4 81 55.6
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 2.6e-17 92.4 117 44.4
TAR374G0914 Trochodendron aralioides HOM05D005499 ORTHO05D006666 1.2e-14 83.6 62 69.4
MCO16G647 Micromonas commoda HOM05D005499 ORTHO05D006666 3.3e-12 75.5 131 39.7
Cre12.g546000 Chlamydomonas reinhardtii HOM05D005499 ORTHO05D006666 9.6e-12 73.9 99 40.4
Dinv24762 Davidia involucrata HOM05D003270 ORTHO05D003662 8.4e-08 60.8 95 40.0
CDE04G0501 Ceratophyllum demersum HOM05D002849 ORTHO05D009472 4.2e-07 58.5 60 56.7
PRCOL_00001894 Prasinoderma coloniale HOM05D005499 ORTHO05D006666 3.5e-06 55.5 81 38.3


User provided reference genes

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