Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 0.0e+00 1192.6 595 100.0
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 0.0e+00 1135.6 581 97.2
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 0.0e+00 1105.1 581 94.5
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 0.0e+00 1087.4 581 92.3
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 1.1e-310 1069.3 581 91.2
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 1.4e-310 1068.9 581 90.9
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 1.5e-304 1048.9 589 88.3
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 3.0e-297 1024.6 583 88.0
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 1.6e-295 1018.8 581 87.4
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 2.8e-295 1018.1 583 87.3
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 3.2e-291 1004.6 582 86.4
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 7.1e-291 1003.4 582 86.6
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 7.1e-291 1003.4 582 86.4
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 1.0e-289 999.6 585 84.6
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 3.4e-277 958.0 582 80.6
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 3.4e-232 808.5 579 70.3
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 2.9e-215 752.3 591 64.8
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 7.1e-214 747.7 583 65.9
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 1.2e-213 746.9 576 67.4
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 3.9e-212 741.9 582 66.5
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 1.5e-211 740.0 587 64.9
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 1.5e-211 740.0 582 65.5
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 7.3e-211 737.6 582 66.7
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 9.5e-211 737.3 583 64.7
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.4e-209 733.4 582 66.2
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 1.4e-209 733.4 583 66.2
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 4.0e-209 731.9 579 63.4
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 1.2e-208 730.3 592 64.5
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 3.4e-208 728.8 582 65.5
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 3.7e-207 725.3 603 63.2
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 3.7e-207 725.3 598 63.4
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 5.4e-206 721.5 586 62.8
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 3.5e-205 718.8 589 62.6
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 1.3e-204 716.8 591 62.3
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 1.7e-204 716.5 587 63.4
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 5.1e-204 714.9 581 64.2
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 9.6e-203 710.7 592 61.1
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 2.1e-202 709.5 587 62.4
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 2.8e-202 709.1 576 62.8
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 3.1e-201 705.7 588 60.0
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 4.0e-201 705.3 587 62.4
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 4.0e-201 705.3 587 62.4
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 1.2e-200 703.7 588 63.4
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 1.5e-200 703.4 588 59.9
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 2.6e-200 702.6 584 61.6
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 1.3e-199 700.3 578 62.6
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 2.9e-199 699.1 585 63.1
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 4.9e-199 698.4 585 63.4
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 8.4e-199 697.6 581 63.3
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 1.1e-198 697.2 587 61.2
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 9.3e-198 694.1 580 62.2
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 3.5e-197 692.2 589 59.9
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 6.0e-197 691.4 594 61.6
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 1.7e-196 689.9 593 61.2
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 3.0e-196 689.1 589 59.9
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 3.0e-196 689.1 591 61.4
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 8.7e-196 687.6 590 60.0
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 6.2e-194 681.4 579 61.1
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 1.1e-193 680.6 584 61.3
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 2.4e-193 679.5 588 59.7
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 5.3e-193 678.3 585 60.7
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 1.5e-192 676.8 586 60.8
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 5.8e-192 674.9 590 61.5
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 2.2e-191 672.9 595 60.3
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 2.4e-190 669.5 584 58.9
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 4.2e-190 668.7 595 58.7
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 9.3e-190 667.5 590 59.5
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 1.2e-189 667.2 584 58.9
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 1.6e-189 666.8 538 65.6
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 3.5e-189 665.6 583 60.0
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 3.5e-189 665.6 584 58.6
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 7.9e-189 664.5 592 56.6
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 1.7e-188 663.3 591 58.7
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 1.6e-186 656.8 581 57.7
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 1.6e-186 656.8 553 60.6
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 2.1e-186 656.4 549 61.4
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 2.4e-185 652.9 589 58.7
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 4.0e-185 652.1 606 57.4
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 1.2e-184 650.6 589 57.9
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 1.2e-184 650.6 557 59.2
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 9.9e-184 647.5 586 58.4
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 1.4e-182 643.7 557 60.9
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 4.2e-182 642.1 591 57.9
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 3.9e-180 635.6 508 65.9
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 5.6e-179 631.7 592 56.6
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 4.8e-178 628.6 582 58.4
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 1.1e-177 627.5 572 60.7
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 1.4e-177 627.1 634 54.4
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 3.8e-175 619.0 538 59.1
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 7.9e-173 611.3 593 54.8
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 7.9e-173 611.3 545 59.6
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 1.1e-171 607.4 650 52.0
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 5.8e-168 595.1 582 54.3
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 1.3e-167 594.0 588 54.1
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 2.1e-165 586.6 592 52.4
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 2.3e-164 583.2 581 53.9
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 2.5e-163 579.7 584 56.2
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 2.8e-162 576.2 589 52.6
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 1.2e-157 560.8 591 52.6
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.4e-156 557.4 578 54.0
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 3.9e-156 555.8 578 53.1
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 6.7e-156 555.1 592 51.5
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 3.7e-154 549.3 584 51.2
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 7.9e-149 531.6 534 54.9
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 1.8e-148 530.4 343 74.3
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 3.0e-148 529.6 596 49.7
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 4.4e-147 525.8 450 60.4
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 6.3e-146 521.9 548 52.6
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 3.5e-144 516.2 549 52.1
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 1.6e-133 480.7 450 56.0
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 5.0e-127 459.1 587 44.3
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 4.2e-126 456.1 415 57.3
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 3.6e-109 399.8 612 37.6
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 1.3e-106 391.3 496 45.4
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 3.2e-105 386.7 579 39.6
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 1.7e-98 364.4 573 36.5
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.2e-88 331.6 363 50.4
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 3.0e-87 327.0 257 63.4
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 5.4e-81 306.2 386 45.9
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 8.1e-77 292.4 399 43.6
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 1.4e-73 281.6 223 64.6
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 1.6e-69 268.1 232 58.6
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 1.5e-67 261.5 452 33.8
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 3.5e-56 223.8 366 39.9
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 1.9e-54 218.0 207 56.0
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 3.3e-54 217.2 189 59.3
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 4.2e-33 147.1 202 45.5
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 1.4e-31 142.1 225 44.9
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 8.8e-31 139.4 147 46.3
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 1.8e-28 131.7 268 35.4
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 3.3e-22 110.9 76 75.0
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 1.3e-21 109.0 326 28.8
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 9.1e-20 102.8 418 23.4
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 1.3e-18 99.0 234 32.5
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 4.4e-14 84.0 50 72.0
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 1.4e-12 79.0 150 33.3
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 1.4e-12 79.0 63 65.1
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 6.5e-10 70.1 84 46.4


User provided reference genes

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