Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL358U10020 Arabidopsis lyrata HOM05D003983 ORTHO05D004562 1.5e-83 312.8 155 100.0
AL5G11470 Arabidopsis lyrata HOM05D003983 ORTHO05D004562 2.2e-66 255.8 127 100.0
Carub.0001s2535 Capsella rubella HOM05D003983 ORTHO05D004562 9.5e-62 240.4 127 93.7
AL4G18740 Arabidopsis lyrata HOM05D003983 ORTHO05D004562 2.8e-61 238.8 127 94.5
AT1G25220 Arabidopsis thaliana HOM05D003983 ORTHO05D004562 6.2e-61 237.7 140 87.1
AL1G40150 Arabidopsis lyrata HOM05D003983 ORTHO05D004562 1.3e-58 229.9 129 93.0
CARHR026340 Cardamine hirsuta HOM05D003983 ORTHO05D004562 1.4e-57 226.5 127 89.0
Thhalv10008447m.g Eutrema salsugineum HOM05D003983 ORTHO05D004562 3.2e-57 225.3 127 89.8
AT5G57890 Arabidopsis thaliana HOM05D003983 ORTHO05D004562 3.3e-54 215.3 127 88.2
Sp1g23070 Schrenkiella parvula HOM05D003983 ORTHO05D004562 4.4e-51 204.9 129 85.3
THA.LOC104809791 Tarenaya hassleriana HOM05D003983 ORTHO05D004562 2.1e-48 196.1 125 81.6
BcaB03g12041 Brassica carinata HOM05D003983 ORTHO05D004562 1.3e-47 193.4 131 81.7
A08p26790 Brassica napus HOM05D003983 ORTHO05D004562 8.7e-47 190.7 131 81.7
BcaC05g26695 Brassica carinata HOM05D003983 ORTHO05D004562 3.3e-46 188.7 133 78.2
Aa31LG7G9320 Aethionema arabicum HOM05D003983 ORTHO05D004562 1.6e-45 186.4 125 76.0
BraA08t34625Z Brassica rapa HOM05D003983 ORTHO05D004562 3.1e-44 182.2 144 72.9
BcaC05g26495 Brassica carinata HOM05D003983 ORTHO05D004562 2.6e-43 179.1 135 71.9
A09p39040 Brassica napus HOM05D003983 ORTHO05D004562 5.8e-43 177.9 136 73.5
BcaC01g01671 Brassica carinata HOM05D003983 ORTHO05D004562 2.9e-42 175.6 130 76.9
C03p73170 Brassica napus HOM05D003983 ORTHO05D004562 2.9e-42 175.6 130 76.9
C05p25470 Brassica napus HOM05D003983 ORTHO05D004562 2.9e-42 175.6 135 70.4
BolC5t31275H Brassica oleracea HOM05D003983 ORTHO05D004562 1.9e-41 172.9 152 65.8
BolC3t19615H Brassica oleracea HOM05D003983 ORTHO05D004562 6.6e-39 164.5 148 67.6
BraA09t39404Z Brassica rapa HOM05D003983 ORTHO05D004562 1.8e-36 156.4 157 63.1
AT1G24909 Arabidopsis thaliana HOM05D003983 ORTHO05D004562 9.9e-35 150.6 73 97.3
AT1G25083 Arabidopsis thaliana HOM05D003983 ORTHO05D004562 9.9e-35 150.6 73 97.3
AT1G25155 Arabidopsis thaliana HOM05D003983 ORTHO05D004562 9.9e-35 150.6 73 97.3
Duzib248G0975 Durio zibethinus HOM05D003983 ORTHO05D004562 3.8e-34 148.7 120 65.0
Thecc.02G305000 Theobroma cacao HOM05D003983 ORTHO05D004562 6.4e-34 147.9 130 58.5
COL.COLO4_27591 Corchorus olitorius HOM05D003983 ORTHO05D004562 3.2e-33 145.6 130 60.8
Manes.15G137900 Manihot esculenta HOM05D003983 ORTHO05D004562 1.6e-32 143.3 130 62.3
AT1G24807 Arabidopsis thaliana HOM05D003983 ORTHO05D004562 6.0e-32 141.4 86 82.6
Cpa.g.sc2.136 Carica papaya HOM05D003983 ORTHO05D004562 1.0e-31 140.6 129 62.8
Duzib268G0992 Durio zibethinus HOM05D003983 ORTHO05D004562 1.0e-31 140.6 130 57.7
Gohir.D12G157100 Gossypium hirsutum HOM05D003983 ORTHO05D004562 8.7e-31 137.5 130 56.9
Gorai.008G169900 Gossypium raimondii HOM05D003983 ORTHO05D004562 8.7e-31 137.5 130 56.9
Gohir.A12G154000 Gossypium hirsutum HOM05D003983 ORTHO05D004562 1.1e-30 137.1 130 56.2
MD13G1016400 Malus domestica HOM05D003983 ORTHO05D004562 7.4e-30 134.4 131 58.0
Manes.17G087200 Manihot esculenta HOM05D003983 ORTHO05D004562 1.3e-29 133.7 129 56.6
Potri.008G138800 Populus trichocarpa HOM05D003983 ORTHO05D004562 1.3e-29 133.7 99 67.7
Prupe.1G337100 Prunus persica HOM05D003983 ORTHO05D004562 1.3e-29 133.7 131 57.3
RcHm_v2.0_Chr4g0388381 Rosa chinensis HOM05D003983 ORTHO05D004562 1.6e-29 133.3 133 60.9
Medtr1g033480 Medicago truncatula HOM05D003983 ORTHO05D004562 2.1e-29 132.9 131 60.3
Lj2g0017484 Lotus japonicus HOM05D003983 ORTHO05D004562 2.8e-29 132.5 128 59.4
RcHm_v2.0_Chr4g0388431 Rosa chinensis HOM05D003983 ORTHO05D004562 2.8e-29 132.5 133 60.2
RcHm_v2.0_Chr3g0486701 Rosa chinensis HOM05D003983 ORTHO05D004562 3.7e-29 132.1 133 60.2
CANSAT78G2066 Cannabis sativa HOM05D003983 ORTHO05D004562 6.2e-29 131.3 128 59.4
Haze_10827 Corylus avellana HOM05D003983 ORTHO05D004562 6.2e-29 131.3 130 56.9
Atru.chr11.745 Acer truncatum HOM05D003983 ORTHO05D004562 1.4e-28 130.2 128 58.6
MD16G1013900 Malus domestica HOM05D003983 ORTHO05D004562 1.4e-28 130.2 131 58.0
Sabra08G0105500 Salix brachista HOM05D003983 ORTHO05D004562 1.4e-28 130.2 102 64.7
TPR.G34556 Trifolium pratense HOM05D003983 ORTHO05D004562 1.4e-28 130.2 128 58.6
TAR629G3105 Trochodendron aralioides HOM05D003983 ORTHO05D004562 1.4e-28 130.2 133 54.9
Dinv14372 Davidia involucrata HOM05D003983 ORTHO05D004562 1.8e-28 129.8 120 56.7
Ca_26339_v3 Cicer arietinum L. HOM05D003983 ORTHO05D004562 3.1e-28 129.0 127 56.7
RcHm_v2.0_Chr3g0486721 Rosa chinensis HOM05D003983 ORTHO05D004562 3.1e-28 129.0 133 59.4
Gohir.D02G137151 Gossypium hirsutum HOM05D003983 ORTHO05D004562 4.0e-28 128.6 130 56.2
Gorai.005G153300 Gossypium raimondii HOM05D003983 ORTHO05D004562 4.0e-28 128.6 130 56.2
Psat6g095080 Pisum sativum HOM05D003983 ORTHO05D004562 4.0e-28 128.6 133 58.6
GSVIVG01011602001 Vitis vinifera HOM05D003983 ORTHO05D004562 4.0e-28 128.6 90 71.1
Glyma.07G175000 Glycine max HOM05D003983 ORTHO05D004562 9.0e-28 127.5 133 54.1
Sed0000196 Sechium edule HOM05D003983 ORTHO05D004562 1.2e-27 127.1 127 52.8
Actinidia12430 Actinidia chinensis HOM05D003983 ORTHO05D004562 1.5e-27 126.7 137 51.1
Cfa015064 Carpinus fangiana HOM05D003983 ORTHO05D004562 3.4e-27 125.6 132 53.8
MELO3C018290.2 Cucumis melo HOM05D003983 ORTHO05D004562 3.4e-27 125.6 127 51.2
Glyma.16G058800 Glycine max HOM05D003983 ORTHO05D004562 3.4e-27 125.6 132 56.1
Lj6A732T67 Lonicera japonica HOM05D003983 ORTHO05D004562 3.4e-27 125.6 132 53.0
Ciclev10016176m.g Citrus clementina HOM05D003983 ORTHO05D004562 5.8e-27 124.8 127 55.1
Potri.010G102200 Populus trichocarpa HOM05D003983 ORTHO05D004562 1.3e-26 123.6 126 53.2
Lalb_Chr07g0187831 Lupinus albus HOM05D003983 ORTHO05D004562 2.9e-26 122.5 126 56.3
Dinv05685 Davidia involucrata HOM05D003983 ORTHO05D004562 3.8e-26 122.1 132 52.3
CsaV3_5G015330 Cucumis sativus L. HOM05D003983 ORTHO05D004562 6.5e-26 121.3 127 49.6
VMungo1215G1104 Vigna mungo HOM05D003983 ORTHO05D004562 6.5e-26 121.3 105 61.0
FvH4_4g33060 Fragaria vesca HOM05D003983 ORTHO05D004562 8.4e-26 120.9 118 58.5
FAN07G1936 Fragaria x ananassa HOM05D003983 ORTHO05D004562 8.4e-26 120.9 128 53.9
FAN17G0269 Fragaria x ananassa HOM05D003983 ORTHO05D004562 8.4e-26 120.9 128 53.9
HanXRQChr08g0224861 Helianthus annuus HOM05D003983 ORTHO05D004562 1.4e-25 120.2 81 70.4
Phvul.003G014300 Phaseolus vulgaris HOM05D003983 ORTHO05D004562 1.4e-25 120.2 133 55.6
QL03p038834 Quercus lobata HOM05D003983 ORTHO05D004562 1.4e-25 120.2 78 71.8
QL03p038897 Quercus lobata HOM05D003983 ORTHO05D004562 1.4e-25 120.2 78 71.8
CiPaw.06G059200 Carya illinoinensis HOM05D003983 ORTHO05D004562 1.9e-25 119.8 128 50.0
FAN22G1456 Fragaria x ananassa HOM05D003983 ORTHO05D004562 1.9e-25 119.8 128 53.1
HanXRQChr12g0366151 Helianthus annuus HOM05D003983 ORTHO05D004562 1.9e-25 119.8 77 72.7
Nn4g24498 Nelumbo nucifera HOM05D003983 ORTHO05D004562 1.9e-25 119.8 62 87.1
CSS0004353 Camellia sinensis var. sinensis HOM05D003983 ORTHO05D004562 2.5e-25 119.4 80 70.0
TAR622G0111 Trochodendron aralioides HOM05D003983 ORTHO05D004562 2.5e-25 119.4 130 51.5
Aqoxy3G04109 Aquilegia oxysepala HOM05D003983 ORTHO05D004562 3.2e-25 119.0 125 53.6
FAN12G1558 Fragaria x ananassa HOM05D003983 ORTHO05D004562 4.2e-25 118.6 116 56.0
Lalb_Chr12g0209351 Lupinus albus HOM05D003983 ORTHO05D004562 4.2e-25 118.6 132 49.2
PSO356G0033 Papaver somniferum HOM05D003983 ORTHO05D004562 5.5e-25 118.2 114 57.0
PSO675G6890 Papaver somniferum HOM05D003983 ORTHO05D004562 5.5e-25 118.2 114 57.0
TWI74G1079 Tripterygium wilfordii HOM05D003983 ORTHO05D004562 5.5e-25 118.2 121 54.5
arahy.Tifrunner.gnm1.ann1.H0K2UA Arachis hypogaea HOM05D003983 ORTHO05D004562 7.1e-25 117.9 93 64.5
ECA246G0293 Erigeron canadensis HOM05D003983 ORTHO05D004562 9.3e-25 117.5 59 88.1
Oeu044076.2 Olea europaea HOM05D003983 ORTHO05D004562 1.6e-24 116.7 81 71.6
TWI56G0668 Tripterygium wilfordii HOM05D003983 ORTHO05D004562 1.6e-24 116.7 133 52.6
arahy.Tifrunner.gnm1.ann1.L1YRVI Arachis hypogaea HOM05D003983 ORTHO05D004562 2.7e-24 115.9 131 51.9
ECA233G0760 Erigeron canadensis HOM05D003983 ORTHO05D004562 2.7e-24 115.9 109 58.7
Nitab4.5_0002315g0030 Nicotiana tabacum HOM05D003983 ORTHO05D004562 2.7e-24 115.9 126 50.8
SGA_v2.0_scaffold23G10117 Striga asiatica HOM05D003983 ORTHO05D004562 2.7e-24 115.9 76 71.1
Migut.E00508 Erythranthe guttata HOM05D003983 ORTHO05D004562 3.5e-24 115.5 76 73.7
Sc08g0003180 Simmondsia chinensis HOM05D003983 ORTHO05D004562 4.6e-24 115.2 62 82.3
Ah.04g149470 Amaranthus hybridus HOM05D003983 ORTHO05D004562 6.0e-24 114.8 115 55.7
Solyc12g010180.2 Solanum lycopersicum HOM05D003983 ORTHO05D004562 6.0e-24 114.8 58 86.2
Sopen12g005050 Solanum pennellii HOM05D003983 ORTHO05D004562 6.0e-24 114.8 58 86.2
ClCG07G006850 Citrullus lanatus HOM05D003983 ORTHO05D004562 1.0e-23 114.0 139 47.5
ClCG07G006870 Citrullus lanatus HOM05D003983 ORTHO05D004562 1.0e-23 114.0 150 44.7
Cc00_g17040 Coffea canephora HOM05D003983 ORTHO05D004562 1.3e-23 113.6 76 69.7
Cc11_g05880 Coffea canephora HOM05D003983 ORTHO05D004562 1.8e-23 113.2 80 65.0
Eucgr.A00016 Eucalyptus grandis HOM05D003983 ORTHO05D004562 1.8e-23 113.2 131 52.7
Gohir.A13G030100 Gossypium hirsutum HOM05D003983 ORTHO05D004562 1.8e-23 113.2 133 52.6
Lsat_1_v5_gn_8_34800 Lactuca sativa HOM05D003983 ORTHO05D004562 1.8e-23 113.2 90 61.1
Peaxi162Scf00062g00418 Petunia axillaris HOM05D003983 ORTHO05D004562 1.8e-23 113.2 91 62.6
SalBow5G2331 Salvia bowleyana HOM05D003983 ORTHO05D004562 3.0e-23 112.5 130 49.2
Os04g0463500 Oryza sativa ssp. japonica HOM05D003983 ORTHO05D004562 6.7e-23 111.3 55 87.3
PGR102G0108 Punica granatum HOM05D003983 ORTHO05D004562 6.7e-23 111.3 145 51.0
Zm00001eb424380 Zea mays HOM05D003983 ORTHO05D004562 6.7e-23 111.3 55 87.3
Mapoly0037s0136 Marchantia polymorpha HOM05D003983 ORTHO05D004562 8.7e-23 110.9 60 76.7
PSO339G3678 Papaver somniferum HOM05D003983 ORTHO05D004562 1.1e-22 110.5 66 78.8
Zm00001eb080510 Zea mays HOM05D003983 ORTHO05D004562 1.5e-22 110.2 55 85.5
EL10Ac3g07448 Beta vulgaris HOM05D003983 ORTHO05D004562 1.9e-22 109.8 61 78.7
Hma1.2p1_0037F.1_g023780 Hydrangea macrophylla HOM05D003983 ORTHO05D004562 1.9e-22 109.8 130 51.5
CDE05G1639 Ceratophyllum demersum HOM05D003983 ORTHO05D004562 3.3e-22 109.0 121 50.4
Pp3c10_17060 Physcomitrium patens HOM05D003983 ORTHO05D004562 7.4e-22 107.8 64 68.8
Hund19014 Selenicereus undatus HOM05D003983 ORTHO05D004562 7.4e-22 107.8 54 87.0
unitig_699.g19470 Utricularia gibba HOM05D003983 ORTHO05D004562 9.6e-22 107.5 108 51.9
MSTRG.13642 Avicennia marina HOM05D003983 ORTHO05D004562 2.1e-21 106.3 53 88.7
Pp3c3_33470 Physcomitrium patens HOM05D003983 ORTHO05D004562 2.8e-21 105.9 57 80.7
SEGI_15310 Sequoiadendron giganteum HOM05D003983 ORTHO05D004562 2.8e-21 105.9 89 55.1
AUR62020869 Chenopodium quinoa HOM05D003983 ORTHO05D004562 3.7e-21 105.5 87 58.6
Ciclev10030118m.g Citrus clementina HOM05D003983 ORTHO05D004562 6.2e-21 104.8 66 75.8
Os03g0718000 Oryza sativa ssp. japonica HOM05D003983 ORTHO05D004562 1.1e-20 104.0 84 57.1
ATR0100G040 Amborella trichopoda HOM05D003983 ORTHO05D004562 1.4e-20 103.6 102 53.9
Nitab4.5_0001478g0080 Nicotiana tabacum HOM05D003983 ORTHO05D004562 3.1e-20 102.4 138 43.5
SMO358G0613 Selaginella moellendorffii HOM05D003983 ORTHO05D004562 5.3e-20 101.7 58 70.7
ATR0598G020 Amborella trichopoda HOM05D003983 ORTHO05D004562 1.5e-19 100.1 54 77.8
AagrBONN_evm.TU.Sc2ySwM_362.1213 Anthoceros agrestis HOM05D003983 ORTHO05D004562 1.5e-19 100.1 111 50.5
Cre14.g620300 Chlamydomonas reinhardtii HOM05D003983 ORTHO05D004562 1.7e-18 96.7 64 57.8
PRCOL_00000049 Prasinoderma coloniale HOM05D003983 ORTHO05D004562 8.4e-18 94.4 57 66.7
CDE11G0429 Ceratophyllum demersum HOM05D003983 ORTHO05D004562 7.1e-17 91.3 144 42.4
SGA_v2.0_scaffold3G01748 Striga asiatica HOM05D003983 ORTHO05D004562 1.6e-16 90.1 70 60.0
MBI19_g25215_MAGBIO Magnolia biondii HOM05D003983 ORTHO05D004562 6.1e-16 88.2 92 56.5
MCO13G279 Micromonas commoda HOM05D003983 ORTHO05D004562 1.8e-15 86.7 55 61.8
RcHm_v2.0_Chr4g0388411 Rosa chinensis HOM05D003983 ORTHO05D004562 1.9e-14 83.2 38 94.7
Nitab4.5_0000283g0460 Nicotiana tabacum HOM05D003983 ORTHO05D004562 2.2e-13 79.7 73 52.1
AUR62018550 Chenopodium quinoa HOM05D003983 ORTHO05D004562 4.8e-13 78.6 74 54.1
Rhsim09G0086300 Rhododendron simsii HOM05D003983 ORTHO05D004562 4.8e-13 78.6 38 89.5
Ca_29558_v3 Cicer arietinum L. HOM05D003983 ORTHO05D004562 1.1e-12 77.4 36 97.2
CAN.G551.33 Capsicum annuum HOM05D003983 ORTHO05D004562 2.4e-12 76.3 36 88.9
SalBow5G2576 Salvia bowleyana HOM05D003983 ORTHO05D004562 2.4e-12 76.3 37 86.5
Lj3C860T0 Lonicera japonica HOM05D003983 ORTHO05D004562 9.0e-12 74.3 36 88.9
Gorai.013G032100 Gossypium raimondii HOM05D003983 ORTHO05D004562 5.9e-11 71.6 58 65.5
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 1.4e-09 67.0 53 56.6
HPP92_010989 Vanilla planifolia HOM05D003983 ORTHO05D004562 1.9e-09 66.6 37 70.3
AL5G19970 Arabidopsis lyrata HOM05D003983 ORTHO05D004562 2.5e-09 66.2 36 83.3
BcaC06g35238 Brassica carinata HOM05D001297 ORTHO05D001135 4.3e-06 55.5 80 48.8


User provided reference genes

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