Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL350U10020 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 8.4e-263 909.8 468 100.0
THA.LOC104817368 Tarenaya hassleriana HOM05D003602 ORTHO05D004808 5.6e-49 199.5 504 30.4
Carub.0004s2923 Capsella rubella HOM05D003602 ORTHO05D004808 2.1e-48 197.6 510 29.8
Thhalv10001293m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 1.1e-47 195.3 509 30.3
AL4G45940 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 1.4e-47 194.9 505 29.9
Manes.01G245400 Manihot esculenta HOM05D003602 ORTHO05D004808 4.0e-47 193.4 535 29.0
CARHR141850 Cardamine hirsuta HOM05D003602 ORTHO05D004808 5.3e-47 193.0 509 30.3
AT2G46520 Arabidopsis thaliana HOM05D003602 ORTHO05D004808 1.5e-46 191.4 505 29.5
Duzib133G0673 Durio zibethinus HOM05D003602 ORTHO05D004808 1.5e-46 191.4 535 28.6
Manes.05G021800 Manihot esculenta HOM05D003602 ORTHO05D004808 2.6e-46 190.7 535 28.4
Gorai.001G154000 Gossypium raimondii HOM05D003602 ORTHO05D004808 3.4e-46 190.3 540 28.5
A05p01280 Brassica napus HOM05D003602 ORTHO05D004808 4.5e-46 189.9 504 29.2
BraA05t19126Z Brassica rapa HOM05D003602 ORTHO05D004808 4.5e-46 189.9 504 29.2
Gohir.D07G142200 Gossypium hirsutum HOM05D003602 ORTHO05D004808 4.5e-46 189.9 535 28.6
Nitab4.5_0001763g0060 Nicotiana tabacum HOM05D003602 ORTHO05D004808 4.5e-46 189.9 509 28.9
BcaC02g12682 Brassica carinata HOM05D003602 ORTHO05D004808 5.8e-46 189.5 504 29.2
Nitab4.5_0002614g0030 Nicotiana tabacum HOM05D003602 ORTHO05D004808 1.7e-45 188.0 509 28.9
Gohir.A07G137000 Gossypium hirsutum HOM05D003602 ORTHO05D004808 2.2e-45 187.6 535 28.2
Thecc.01G340800 Theobroma cacao HOM05D003602 ORTHO05D004808 2.9e-45 187.2 535 28.0
Migut.N01537 Erythranthe guttata HOM05D003602 ORTHO05D004808 3.8e-45 186.8 504 28.6
Migut.B01885 Erythranthe guttata HOM05D003602 ORTHO05D004808 4.9e-45 186.4 503 29.2
Sp4g28560 Schrenkiella parvula HOM05D003602 ORTHO05D004808 6.4e-45 186.0 505 29.3
Oeu043228.1 Olea europaea HOM05D003602 ORTHO05D004808 1.1e-44 185.3 503 28.6
Duzib138G1559 Durio zibethinus HOM05D003602 ORTHO05D004808 1.4e-44 184.9 535 28.0
Medtr8g027450 Medicago truncatula HOM05D003602 ORTHO05D004808 1.9e-44 184.5 505 28.1
arahy.Tifrunner.gnm1.ann1.M38EY0 Arachis hypogaea HOM05D003602 ORTHO05D004808 3.2e-44 183.7 504 28.0
MSTRG.17352 Avicennia marina HOM05D003602 ORTHO05D004808 3.2e-44 183.7 505 29.1
CANSAT56G2221 Cannabis sativa HOM05D003602 ORTHO05D004808 3.2e-44 183.7 503 28.4
TPR.G20226 Trifolium pratense HOM05D003602 ORTHO05D004808 3.2e-44 183.7 504 27.4
arahy.Tifrunner.gnm1.ann1.100NT6 Arachis hypogaea HOM05D003602 ORTHO05D004808 4.2e-44 183.3 504 27.8
Cc02_g39500 Coffea canephora HOM05D003602 ORTHO05D004808 4.2e-44 183.3 506 28.5
TWI59G0599 Tripterygium wilfordii HOM05D003602 ORTHO05D004808 4.2e-44 183.3 512 28.7
CSS0032390 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 5.5e-44 183.0 504 28.2
Dinv34217 Davidia involucrata HOM05D003602 ORTHO05D004808 5.5e-44 183.0 508 28.1
Actinidia17298 Actinidia chinensis HOM05D003602 ORTHO05D004808 9.3e-44 182.2 504 28.0
Lj7P499T29 Lonicera japonica HOM05D003602 ORTHO05D004808 9.3e-44 182.2 504 29.2
vmacro07844 Vaccinium macrocarpon HOM05D003602 ORTHO05D004808 9.3e-44 182.2 508 28.5
PGSC0003DMG401000117 Solanum tuberosum HOM05D003602 ORTHO05D004808 1.6e-43 181.4 509 28.1
unitig_736.g22809 Utricularia gibba HOM05D003602 ORTHO05D004808 2.1e-43 181.0 504 28.8
Lalb_Chr17g0342751 Lupinus albus HOM05D003602 ORTHO05D004808 2.7e-43 180.6 540 25.9
Sopen01g039780 Solanum pennellii HOM05D003602 ORTHO05D004808 2.7e-43 180.6 509 28.1
SGA_v2.0_scaffold22G09979 Striga asiatica HOM05D003602 ORTHO05D004808 2.7e-43 180.6 508 29.3
SGA_v2.0_scaffold22G09976 Striga asiatica HOM05D003602 ORTHO05D004808 3.5e-43 180.3 508 29.3
CsaV3_3G007970 Cucumis sativus L. HOM05D003602 ORTHO05D004808 4.6e-43 179.9 521 27.8
Phvul.006G114111 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 4.6e-43 179.9 503 27.0
Potri.002G172700 Populus trichocarpa HOM05D003602 ORTHO05D004808 4.6e-43 179.9 535 27.9
Sabra14G0073400 Salix brachista HOM05D003602 ORTHO05D004808 4.6e-43 179.9 535 27.9
CiPaw.01G077200 Carya illinoinensis HOM05D003602 ORTHO05D004808 6.0e-43 179.5 509 27.9
Haze_15672 Corylus avellana HOM05D003602 ORTHO05D004808 1.3e-42 178.3 513 27.7
Lalb_Chr04g0254381 Lupinus albus HOM05D003602 ORTHO05D004808 1.3e-42 178.3 535 25.8
Phvul.006G114200 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 1.3e-42 178.3 503 27.0
Cfa003788 Carpinus fangiana HOM05D003602 ORTHO05D004808 2.3e-42 177.6 513 27.5
Nn1g00272 Nelumbo nucifera HOM05D003602 ORTHO05D004808 2.3e-42 177.6 504 27.8
Sabra02G0140500 Salix brachista HOM05D003602 ORTHO05D004808 2.3e-42 177.6 535 27.3
VMungo0540G0473 Vigna mungo HOM05D003602 ORTHO05D004808 2.3e-42 177.6 503 27.2
COL.COLO4_06273 Corchorus olitorius HOM05D003602 ORTHO05D004808 3.0e-42 177.2 521 28.2
MELO3C006015.2 Cucumis melo HOM05D003602 ORTHO05D004808 3.0e-42 177.2 521 27.4
Solyc01g096060.4 Solanum lycopersicum HOM05D003602 ORTHO05D004808 3.0e-42 177.2 509 27.9
CARHR195690 Cardamine hirsuta HOM05D003602 ORTHO05D004808 3.9e-42 176.8 505 28.5
Potri.014G100000 Populus trichocarpa HOM05D003602 ORTHO05D004808 3.9e-42 176.8 535 27.7
Sed0018077 Sechium edule HOM05D003602 ORTHO05D004808 8.7e-42 175.6 504 27.2
ATR0605G321 Amborella trichopoda HOM05D003602 ORTHO05D004808 1.1e-41 175.3 503 28.2
Eucgr.D02383 Eucalyptus grandis HOM05D003602 ORTHO05D004808 1.1e-41 175.3 504 27.2
Glyma.07G054900 Glycine max HOM05D003602 ORTHO05D004808 1.1e-41 175.3 504 26.8
PGR042G2389 Punica granatum HOM05D003602 ORTHO05D004808 1.1e-41 175.3 512 28.5
VMungo0540G0209 Vigna mungo HOM05D003602 ORTHO05D004808 1.5e-41 174.9 509 27.1
ClCG05G000750 Citrullus lanatus HOM05D003602 ORTHO05D004808 1.9e-41 174.5 521 27.1
Hma1.2p1_0390F.1_g142640 Hydrangea macrophylla HOM05D003602 ORTHO05D004808 1.9e-41 174.5 508 27.6
Rhsim03G0025100 Rhododendron simsii HOM05D003602 ORTHO05D004808 1.9e-41 174.5 505 27.3
ECA236G0047 Erigeron canadensis HOM05D003602 ORTHO05D004808 2.5e-41 174.1 508 27.8
Glyma.16G023700 Glycine max HOM05D003602 ORTHO05D004808 3.3e-41 173.7 504 26.8
Peaxi162Scf00345g00023 Petunia axillaris HOM05D003602 ORTHO05D004808 3.3e-41 173.7 514 27.4
CAN.G1415.23 Capsicum annuum HOM05D003602 ORTHO05D004808 5.6e-41 172.9 504 28.0
Sed0022447 Sechium edule HOM05D003602 ORTHO05D004808 5.6e-41 172.9 521 26.7
Aqoxy7G00067 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 7.4e-41 172.6 506 27.9
CSS0048042 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 2.1e-40 171.0 505 27.7
Carub.0001s3638 Capsella rubella HOM05D003602 ORTHO05D004808 3.7e-40 170.2 559 27.0
Sc02g0002440 Simmondsia chinensis HOM05D003602 ORTHO05D004808 6.2e-40 169.5 510 27.1
Sc02g0002490 Simmondsia chinensis HOM05D003602 ORTHO05D004808 6.2e-40 169.5 510 27.1
Ciclev10018709m.g Citrus clementina HOM05D003602 ORTHO05D004808 8.1e-40 169.1 536 27.2
Lsat_1_v5_gn_7_961 Lactuca sativa HOM05D003602 ORTHO05D004808 1.4e-39 168.3 512 27.0
Lj3g0012795 Lotus japonicus HOM05D003602 ORTHO05D004808 1.4e-39 168.3 511 26.2
Prupe.2G190300 Prunus persica HOM05D003602 ORTHO05D004808 1.8e-39 167.9 509 27.3
MD01G1083100 Malus domestica HOM05D003602 ORTHO05D004808 5.3e-39 166.4 509 27.5
TAR371G1016 Trochodendron aralioides HOM05D003602 ORTHO05D004808 5.3e-39 166.4 404 30.4
QL08p045638 Quercus lobata HOM05D003602 ORTHO05D004808 9.0e-39 165.6 504 26.6
SalBow2G0371 Salvia bowleyana HOM05D003602 ORTHO05D004808 2.6e-38 164.1 509 27.9
Ca_23524_v3 Cicer arietinum L. HOM05D003602 ORTHO05D004808 7.6e-38 162.5 496 25.8
RcHm_v2.0_Chr1g0360031 Rosa chinensis HOM05D003602 ORTHO05D004808 1.3e-37 161.8 509 26.9
DCAR_008665 Daucus carota HOM05D003602 ORTHO05D004808 1.7e-37 161.4 509 26.1
HanXRQChr04g0120491 Helianthus annuus HOM05D003602 ORTHO05D004808 2.9e-37 160.6 513 25.9
Oeu007881.3 Olea europaea HOM05D003602 ORTHO05D004808 1.1e-36 158.7 499 27.5
Actinidia39220 Actinidia chinensis HOM05D003602 ORTHO05D004808 3.2e-36 157.1 495 26.1
SHI11330 Sapria himalayana HOM05D003602 ORTHO05D004808 7.1e-36 156.0 503 26.0
TAR375G0067 Trochodendron aralioides HOM05D003602 ORTHO05D004808 9.3e-36 155.6 513 27.1
HPP92_002938 Vanilla planifolia HOM05D003602 ORTHO05D004808 1.2e-35 155.2 516 26.6
Dinv32601 Davidia involucrata HOM05D003602 ORTHO05D004808 2.7e-35 154.1 469 28.1
Aqoxy4G00207 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 6.0e-35 152.9 506 25.9
Mapoly0156s0024 Marchantia polymorpha HOM05D003602 ORTHO05D004808 3.9e-34 150.2 503 25.6
SEGI_02600 Sequoiadendron giganteum HOM05D003602 ORTHO05D004808 5.1e-34 149.8 508 25.0
Pp3c16_3270 Physcomitrium patens HOM05D003602 ORTHO05D004808 3.3e-33 147.1 504 24.8
PSO135G0828 Papaver somniferum HOM05D003602 ORTHO05D004808 4.3e-33 146.7 537 24.2
A02p08760 Brassica napus HOM05D003602 ORTHO05D004808 5.7e-33 146.4 527 25.6
CARHR193560 Cardamine hirsuta HOM05D003602 ORTHO05D004808 5.7e-33 146.4 539 26.0
PSO384G3294 Papaver somniferum HOM05D003602 ORTHO05D004808 9.6e-33 145.6 537 24.2
Aa31LG1G27870 Aethionema arabicum HOM05D003602 ORTHO05D004808 1.6e-32 144.8 514 26.5
BraA02t05946Z Brassica rapa HOM05D003602 ORTHO05D004808 2.8e-32 144.1 522 25.3
Hund27357 Selenicereus undatus HOM05D003602 ORTHO05D004808 2.8e-32 144.1 517 25.1
Ah.14g081150 Amaranthus hybridus HOM05D003602 ORTHO05D004808 3.7e-32 143.7 510 24.9
CBR_g50023 Chara braunii HOM05D003602 ORTHO05D004808 8.2e-32 142.5 524 25.2
Ah.03g136880 Amaranthus hybridus HOM05D003602 ORTHO05D004808 4.1e-31 140.2 510 24.7
TPR.G33518 Trifolium pratense HOM05D003602 ORTHO05D004808 9.0e-31 139.0 464 25.0
EL10Ac6g13271 Beta vulgaris HOM05D003602 ORTHO05D004808 2.6e-30 137.5 510 24.3
Pp3c27_3380 Physcomitrium patens HOM05D003602 ORTHO05D004808 5.9e-30 136.3 504 24.4
AUR62020311 Chenopodium quinoa HOM05D003602 ORTHO05D004808 1.7e-29 134.8 511 26.0
FAN06G1715 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.2e-29 134.4 502 24.5
EL10Ac8g18571 Beta vulgaris HOM05D003602 ORTHO05D004808 3.8e-29 133.7 491 25.1
FAN06G4341 Fragaria x ananassa HOM05D003602 ORTHO05D004808 6.5e-29 132.9 507 23.9
FAN03G2718 Fragaria x ananassa HOM05D003602 ORTHO05D004808 8.4e-29 132.5 505 24.6
BcaC03g13954 Brassica carinata HOM05D003602 ORTHO05D004808 1.1e-28 132.1 528 25.2
FvH4_7g16830 Fragaria vesca HOM05D003602 ORTHO05D004808 1.9e-28 131.3 502 24.3
FAN10G3025 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.9e-28 131.3 502 24.3
SalBow3G0266 Salvia bowleyana HOM05D003602 ORTHO05D004808 1.9e-28 131.3 277 31.4
FAN01G1925 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.5e-28 131.0 502 24.3
FAN10G2704 Fragaria x ananassa HOM05D003602 ORTHO05D004808 7.9e-27 125.9 502 23.7
Zm00001eb216140 Zea mays HOM05D003602 ORTHO05D004808 1.8e-26 124.8 506 22.7
C04p01410 Brassica napus HOM05D003602 ORTHO05D004808 5.1e-26 123.2 128 47.7
QL11p045606 Quercus lobata HOM05D003602 ORTHO05D004808 8.7e-26 122.5 466 24.9
Cpa.g.sc18.79 Carica papaya HOM05D003602 ORTHO05D004808 2.5e-25 120.9 128 43.0
Zm00001eb055080 Zea mays HOM05D003602 ORTHO05D004808 3.3e-25 120.6 506 22.7
Psat4g162200 Pisum sativum HOM05D003602 ORTHO05D004808 4.3e-25 120.2 303 30.7
BolC4t21795H Brassica oleracea HOM05D003602 ORTHO05D004808 7.4e-25 119.4 128 46.1
BcaB03g13365 Brassica carinata HOM05D003602 ORTHO05D004808 9.7e-25 119.0 337 30.9
CDE10G0721 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 1.1e-23 115.5 305 30.2
MD07G1151800 Malus domestica HOM05D003602 ORTHO05D004808 4.1e-23 113.6 301 30.6
CDE10G0625 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 5.9e-22 109.8 292 29.5
SMO364G0669 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 1.7e-21 108.2 525 22.7
Thhalv10019782m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 6.5e-21 106.3 514 23.9
Os01g0235400 Oryza sativa ssp. japonica HOM05D003602 ORTHO05D004808 4.2e-20 103.6 384 24.0
AagrBONN_evm.TU.Sc2ySwM_228.4084 Anthoceros agrestis HOM05D003602 ORTHO05D004808 1.6e-19 101.7 336 28.0
AagrBONN_evm.TU.Sc2ySwM_368.664__665 Anthoceros agrestis HOM05D003602 ORTHO05D004808 4.6e-19 100.1 299 28.4
PRCOL_00001712 Prasinoderma coloniale HOM05D003602 ORTHO05D004808 6.1e-19 99.8 524 20.6
GSVIVG01027164001 Vitis vinifera HOM05D003602 ORTHO05D004808 1.0e-18 99.0 250 30.4
Cre16.g685901 Chlamydomonas reinhardtii HOM05D003602 ORTHO05D004808 5.1e-18 96.7 515 22.1
CAN.G1045.28 Capsicum annuum HOM05D003602 ORTHO05D004808 1.3e-16 92.0 96 46.9
Medtr6g051660 Medicago truncatula HOM05D003602 ORTHO05D004808 1.3e-16 92.0 334 28.1
A03p50080 Brassica napus HOM05D023195 ORTHO05D024270 1.5e-14 85.1 179 33.5
BolC2t07237H Brassica oleracea HOM05D003602 ORTHO05D004808 4.5e-14 83.6 117 37.6
AUR62011778 Chenopodium quinoa HOM05D003602 ORTHO05D004808 1.2e-11 75.5 156 35.9
BcaC03g15021 Brassica carinata HOM05D003602 ORTHO05D018547 3.6e-11 73.9 465 24.1
C01p43660 Brassica napus HOM05D023195 ORTHO05D024270 1.0e-10 72.4 159 30.8
BolC1t04325H Brassica oleracea HOM05D023195 ORTHO05D024270 1.0e-10 72.4 159 30.8
QL10p039122 Quercus lobata HOM05D003602 ORTHO05D004808 1.0e-10 72.4 173 31.8
Lj9C388G20 Lonicera japonica HOM05D003602 ORTHO05D004808 2.3e-10 71.2 127 37.0
MCO04G210 Micromonas commoda HOM05D003602 ORTHO05D004808 2.3e-10 71.2 89 38.2
BcaC09g48998 Brassica carinata HOM05D023195 ORTHO05D024270 3.0e-10 70.9 158 29.1
BraA03t14101Z Brassica rapa HOM05D023195 ORTHO05D024270 1.1e-09 68.9 146 33.6
FAN17G1261 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.0e-09 68.2 294 24.1
SMO358G0230 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 7.4e-09 66.2 385 22.1
BolC2t08632H Brassica oleracea HOM05D003602 ORTHO05D004808 1.6e-06 58.5 107 39.3
QL06p027270 Quercus lobata HOM05D004207 ORTHO05D005188 2.0e-06 58.2 206 25.2


User provided reference genes

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