Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL34U10060 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.0e-170 601.7 290 100.0
AL8G22310 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 9.8e-153 543.5 381 73.5
AL34U10080 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.8e-138 496.1 389 66.1
AL8G22320 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.2e-135 485.0 389 64.8
Carub.0005s0676 Capsella rubella HOM05D002743 ORTHO05D002895 2.2e-64 250.0 382 42.1
AL5G17810 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.2e-63 245.0 383 40.2
AT3G28330 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.2e-62 244.2 395 41.3
Carub.0005s0683 Capsella rubella HOM05D002743 ORTHO05D002895 1.8e-61 240.4 388 40.7
Carub.0008s0568 Capsella rubella HOM05D002743 ORTHO05D002895 1.6e-57 227.3 381 38.8
BcaC04g23794 Brassica carinata HOM05D002743 ORTHO05D002895 1.3e-56 224.2 408 36.0
C09p04610 Brassica napus HOM05D002743 ORTHO05D002895 2.3e-56 223.4 408 35.8
BolC9t53389H Brassica oleracea HOM05D002743 ORTHO05D002895 2.3e-56 223.4 408 35.8
Carub.0005s0673 Capsella rubella HOM05D002743 ORTHO05D002895 1.9e-55 220.3 363 38.6
AT3G28223 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.8e-53 213.8 363 38.0
BolC9t53387H Brassica oleracea HOM05D002743 ORTHO05D002895 1.5e-52 210.7 376 36.7
A02p35850 Brassica napus HOM05D002743 ORTHO05D002895 2.6e-52 209.9 392 38.0
BraA02t08589Z Brassica rapa HOM05D002743 ORTHO05D002895 2.6e-52 209.9 392 38.0
A04p11100 Brassica napus HOM05D002743 ORTHO05D002895 5.7e-52 208.8 389 36.2
C02p54750 Brassica napus HOM05D002743 ORTHO05D002895 1.7e-51 207.2 392 37.5
BraA02t08585Z Brassica rapa HOM05D002743 ORTHO05D002895 3.7e-51 206.1 392 37.8
BraA07t28566Z Brassica rapa HOM05D002743 ORTHO05D002895 3.7e-51 206.1 390 35.9
BraA04t16772Z Brassica rapa HOM05D002743 ORTHO05D002895 4.9e-51 205.7 390 35.9
A07p07740 Brassica napus HOM05D002743 ORTHO05D002895 8.3e-51 204.9 390 35.9
Thhalv10000704m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.1e-50 204.5 392 36.0
A09p04310 Brassica napus HOM05D002743 ORTHO05D002895 9.2e-50 201.4 421 34.7
BcaC04g23796 Brassica carinata HOM05D002743 ORTHO05D002895 1.6e-49 200.7 369 36.3
BraA09t36068Z Brassica rapa HOM05D002743 ORTHO05D002895 5.9e-49 198.7 421 34.4
BolC2t11536H Brassica oleracea HOM05D002743 ORTHO05D002895 1.3e-48 197.6 400 36.2
AL5G17830 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.6e-48 194.9 347 37.5
C04p44830 Brassica napus HOM05D002743 ORTHO05D002895 1.9e-47 193.7 389 34.7
C07p11650 Brassica napus HOM05D002743 ORTHO05D002895 9.5e-47 191.4 356 36.0
BcaC03g17512 Brassica carinata HOM05D002743 ORTHO05D002895 2.1e-46 190.3 413 34.9
BcaC06g35723 Brassica carinata HOM05D002743 ORTHO05D002895 6.2e-46 188.7 384 34.9
Carub.0005s0675 Capsella rubella HOM05D002743 ORTHO05D002895 3.1e-45 186.4 358 37.4
Thhalv10001535m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.9e-43 179.9 290 42.1
Thhalv10009727m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.4e-42 176.8 416 34.9
CARHR286050 Cardamine hirsuta HOM05D002743 ORTHO05D002895 6.0e-41 172.2 271 42.1
C07p52690 Brassica napus HOM05D002743 ORTHO05D002895 5.8e-36 155.6 166 49.4
C09p04580 Brassica napus HOM05D002743 ORTHO05D002895 3.2e-34 149.8 180 45.6
AT3G28280 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 4.1e-34 149.4 296 37.8
Thhalv10009395m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.6e-33 147.5 374 33.7
BcaB04g19549 Brassica carinata HOM05D002743 ORTHO05D002895 3.0e-32 143.3 373 30.8
BcaC02g09624 Brassica carinata HOM05D002743 ORTHO05D002895 9.5e-31 138.3 307 33.2
BolC4t26061H Brassica oleracea HOM05D002743 ORTHO05D002895 9.5e-31 138.3 307 33.2
A03p54310 Brassica napus HOM05D002743 ORTHO05D002895 1.2e-30 137.9 297 34.3
Carub.0004s2674 Capsella rubella HOM05D002743 ORTHO05D002895 2.1e-30 137.1 383 32.4
BcaB03g16763 Brassica carinata HOM05D002743 ORTHO05D002895 1.2e-28 131.3 297 35.4
BcaC06g36618 Brassica carinata HOM05D002743 ORTHO05D002895 3.4e-28 129.8 175 43.4
BcaC06g36619 Brassica carinata HOM05D002743 ORTHO05D002895 3.4e-28 129.8 175 43.4
CARHR158010 Cardamine hirsuta HOM05D002743 ORTHO05D002895 4.9e-27 125.9 180 44.4
A02p35840 Brassica napus HOM05D002743 ORTHO05D002895 7.8e-25 118.6 195 37.9
BolC7t41637H Brassica oleracea HOM05D002743 ORTHO05D002895 7.8e-25 118.6 288 31.9
AL3G39690 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.6e-24 115.2 127 55.9
AL5G17850 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.1e-22 110.5 136 50.7
BraA03t14493Z Brassica rapa HOM05D002743 ORTHO05D002895 2.1e-22 110.5 219 36.1
A02p35870 Brassica napus HOM05D002743 ORTHO05D002895 1.1e-21 108.2 126 47.6
AL3G39670 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.1e-21 106.7 172 39.0
SpUn0003_0080 Schrenkiella parvula HOM05D002743 ORTHO05D002895 5.8e-20 102.4 123 46.3
BcaC04g23797 Brassica carinata HOM05D002743 ORTHO05D002895 2.9e-19 100.1 137 44.5
Carub.0005s0386 Capsella rubella HOM05D002743 ORTHO05D002895 2.9e-19 100.1 374 26.2
C01p14880 Brassica napus HOM05D002743 ORTHO05D002895 6.4e-19 99.0 334 28.7
C07p02110 Brassica napus HOM05D002743 ORTHO05D002895 8.4e-19 98.6 175 38.9
BcaC09g51280 Brassica carinata HOM05D002743 ORTHO05D002895 1.9e-18 97.4 313 29.7
A02p35880 Brassica napus HOM05D002743 ORTHO05D002895 7.1e-18 95.5 139 44.6
BcaB08g36563 Brassica carinata HOM05D002743 ORTHO05D002895 1.6e-17 94.4 363 29.2
Thhalv10028185m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 3.5e-17 93.2 166 41.6
BraA10t43989Z Brassica rapa HOM05D002743 ORTHO05D002895 1.0e-16 91.7 406 24.1
BcaNung01438 Brassica carinata HOM05D002743 ORTHO05D002895 1.7e-16 90.9 72 56.9
BcaB07g33444 Brassica carinata HOM05D002743 ORTHO05D002895 5.1e-16 89.4 422 26.8
Thhalv10013759m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 6.6e-16 89.0 380 26.8
AT3G26010 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.1e-15 88.2 384 25.5
BcaB07g33449 Brassica carinata HOM05D002743 ORTHO05D002895 1.1e-15 88.2 371 26.4
BcaB06g27159 Brassica carinata HOM05D002743 ORTHO05D002895 1.9e-15 87.4 109 50.5
A10p19100 Brassica napus HOM05D002743 ORTHO05D002895 2.5e-15 87.0 375 24.8
BcaB07g33448 Brassica carinata HOM05D002743 ORTHO05D002895 3.3e-15 86.7 419 24.3
C06p04690 Brassica napus HOM05D002743 ORTHO05D002895 5.6e-15 85.9 379 26.4
Sp2g04630 Schrenkiella parvula HOM05D002743 ORTHO05D002895 3.6e-14 83.2 414 25.1
C09p56260 Brassica napus HOM05D002743 ORTHO05D002895 6.2e-14 82.4 292 29.8
AL5G16370 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.1e-14 82.0 415 26.3
CARHR100280 Cardamine hirsuta HOM05D002743 ORTHO05D002895 8.1e-14 82.0 414 23.7
AL1G57560 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.1e-13 81.6 346 26.0
Sp3g21990 Schrenkiella parvula HOM05D002743 ORTHO05D002895 4.0e-13 79.7 197 28.9
CARHR100730 Cardamine hirsuta HOM05D002743 ORTHO05D002895 9.0e-13 78.6 70 62.9
THA.LOC104823978 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 2.0e-12 77.4 167 28.7
AL6G47130 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.6e-12 75.5 431 22.0
BcaNung01437 Brassica carinata HOM05D002743 ORTHO05D002895 7.6e-12 75.5 59 61.0
C07p52700 Brassica napus HOM05D002743 ORTHO05D002895 7.6e-12 75.5 59 61.0
BraA02t08588Z Brassica rapa HOM05D002743 ORTHO05D002895 7.6e-12 75.5 198 31.8
CARHR288580 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.7e-11 74.3 151 29.1
AL3G39550 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.2e-11 73.9 354 24.0
CARHR100270 Cardamine hirsuta HOM05D002743 ORTHO05D002895 3.8e-11 73.2 149 26.8
Carub.0003s2456 Capsella rubella HOM05D002743 ORTHO05D002895 5.4e-10 69.3 137 30.7
AL4G45790 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 9.3e-10 68.6 66 56.1
BolC9t58379H Brassica oleracea HOM05D002743 ORTHO05D002895 9.3e-10 68.6 313 25.6
BolC7t41698H Brassica oleracea HOM05D002743 ORTHO05D002895 1.6e-09 67.8 209 26.3
Carub.0006s2838 Capsella rubella HOM05D002743 ORTHO05D002895 1.6e-09 67.8 133 30.8
Thhalv10023522m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.7e-09 67.0 188 27.1
CARHR149600 Cardamine hirsuta HOM05D002743 ORTHO05D002895 3.5e-09 66.6 61 54.1
AL5G14680 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.6e-09 66.2 156 35.9
BcaC06g35666 Brassica carinata HOM05D002743 ORTHO05D002895 4.6e-09 66.2 209 25.8
C07p12300 Brassica napus HOM05D002743 ORTHO05D002895 4.6e-09 66.2 209 25.8
AT1G49990 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 6.0e-09 65.9 248 27.4
BolC9t53386H Brassica oleracea HOM05D002743 ORTHO05D002895 7.9e-09 65.5 40 70.0
BcaB07g33451 Brassica carinata HOM05D002743 ORTHO05D002895 1.3e-08 64.7 80 47.5
AL1G67480 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.3e-08 63.9 87 46.0
BraA06t23552Z Brassica rapa HOM05D002743 ORTHO05D002895 3.0e-08 63.5 81 48.1
AT1G15680 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 5.1e-08 62.8 121 38.0
A02p05860 Brassica napus HOM05D002743 ORTHO05D002895 5.1e-08 62.8 64 53.1
BraA02t05538Z Brassica rapa HOM05D002743 ORTHO05D002895 5.1e-08 62.8 64 53.1
C09p53870 Brassica napus HOM05D002743 ORTHO05D002895 8.7e-08 62.0 109 39.4
THA.LOC104805970 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 8.7e-08 62.0 115 37.4
BcaC08g43177 Brassica carinata HOM05D002743 ORTHO05D002895 1.1e-07 61.6 81 46.9
Carub.0007s1889 Capsella rubella HOM05D002743 ORTHO05D002895 1.1e-07 61.6 90 43.3
Carub.0151s0001 Capsella rubella HOM05D002743 ORTHO05D002895 1.1e-07 61.6 241 29.5
AT4G22430 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.5e-07 61.2 96 45.8
BcaB08g36410 Brassica carinata HOM05D002743 ORTHO05D002895 1.9e-07 60.8 167 35.3
A06p03440 Brassica napus HOM05D002743 ORTHO05D002895 1.9e-07 60.8 81 48.1
BraA09t37413Z Brassica rapa HOM05D002743 ORTHO05D002895 1.9e-07 60.8 185 28.1
Thhalv10011517m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.9e-07 60.8 97 40.2
BNapus_Darmor_BZH_scaffold_38p02040 Brassica napus HOM05D002743 ORTHO05D002895 3.3e-07 60.1 70 48.6
C06p04770 Brassica napus HOM05D002743 ORTHO05D002895 3.3e-07 60.1 81 46.9
C09p22150 Brassica napus HOM05D002743 ORTHO05D002895 3.3e-07 60.1 188 27.7
CARHR286560 Cardamine hirsuta HOM05D002743 ORTHO05D002895 3.3e-07 60.1 122 36.1
Sp1g36850 Schrenkiella parvula HOM05D002743 ORTHO05D002895 3.3e-07 60.1 234 27.8
SpUn0137_0030 Schrenkiella parvula HOM05D002743 ORTHO05D002895 3.3e-07 60.1 234 27.8
BcaC04g22203 Brassica carinata HOM05D002743 ORTHO05D002895 4.3e-07 59.7 188 27.7
BolC9t55130H Brassica oleracea HOM05D002743 ORTHO05D002895 4.3e-07 59.7 188 27.7
AL5G18350 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 5.6e-07 59.3 103 34.0
BcaB08g37317 Brassica carinata HOM05D002743 ORTHO05D002895 5.6e-07 59.3 197 29.4
A07p08150 Brassica napus HOM05D002743 ORTHO05D002895 5.6e-07 59.3 208 24.5
C06p04730 Brassica napus HOM05D002743 ORTHO05D002895 5.6e-07 59.3 69 49.3
BolC2t06988H Brassica oleracea HOM05D002743 ORTHO05D002895 5.6e-07 59.3 64 51.6
BolC6t35601H Brassica oleracea HOM05D002743 ORTHO05D002895 5.6e-07 59.3 124 33.9
BraA07t28599Z Brassica rapa HOM05D002743 ORTHO05D002895 5.6e-07 59.3 208 24.5
A10p18240 Brassica napus HOM05D002743 ORTHO05D002895 9.6e-07 58.5 112 39.3
BraA10t43899Z Brassica rapa HOM05D002743 ORTHO05D002895 9.6e-07 58.5 112 39.3
AL1G27780 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.3e-06 58.2 121 32.2
A01p12360 Brassica napus HOM05D002743 ORTHO05D002895 1.3e-06 58.2 116 40.5
BraA01t01181Z Brassica rapa HOM05D002743 ORTHO05D002895 1.3e-06 58.2 116 40.5
BcaB08g36564 Brassica carinata HOM05D002743 ORTHO05D002895 1.6e-06 57.8 60 55.0
BcaC08g43169 Brassica carinata HOM05D002743 ORTHO05D002895 1.6e-06 57.8 60 53.3
BcaC08g43172 Brassica carinata HOM05D002743 ORTHO05D002895 1.6e-06 57.8 121 33.9
BolC6t35599H Brassica oleracea HOM05D002743 ORTHO05D002895 1.6e-06 57.8 60 53.3
C03p83600 Brassica napus HOM05D002743 ORTHO05D002895 2.1e-06 57.4 127 37.0
BolC4t26059H Brassica oleracea HOM05D002743 ORTHO05D002895 2.1e-06 57.4 41 63.4
CARHR025250 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.8e-06 57.0 49 63.3
A01p25990 Brassica napus HOM05D002743 ORTHO05D002895 3.7e-06 56.6 59 52.5
A10p19880 Brassica napus HOM05D002743 ORTHO05D002895 3.7e-06 56.6 63 50.8
BraA01t02518Z Brassica rapa HOM05D002743 ORTHO05D002895 3.7e-06 56.6 59 52.5
A09p17800 Brassica napus HOM05D002743 ORTHO05D002895 4.8e-06 56.2 143 30.1
BNapus_Darmor_BZH_scaffold_38p02050 Brassica napus HOM05D002743 ORTHO05D002895 4.8e-06 56.2 70 48.6
BolC3t20638H Brassica oleracea HOM05D002743 ORTHO05D002895 4.8e-06 56.2 82 43.9
BraA02t08587Z Brassica rapa HOM05D002743 ORTHO05D002895 4.8e-06 56.2 37 70.3
C03p83580 Brassica napus HOM05D002743 ORTHO05D002895 6.2e-06 55.8 82 43.9
C03p83640 Brassica napus HOM05D002743 ORTHO05D002895 6.2e-06 55.8 82 43.9
Thhalv10027176m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 6.2e-06 55.8 51 62.7
AL6G43580 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.1e-06 55.5 51 56.9
Carub.0004s1288 Capsella rubella HOM05D002743 ORTHO05D002895 8.1e-06 55.5 95 36.8
TAR376G1058 Trochodendron aralioides HOM05D005561 ORTHO05D006834 8.1e-06 55.5 56 41.1


User provided reference genes

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