Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL343U10020 Arabidopsis lyrata HOM05D005366 ORTHO05D006323 0.0e+00 1575.1 1050 100.0
AT4G31570 Arabidopsis thaliana HOM05D005366 ORTHO05D006323 0.0e+00 1236.9 1083 80.9
Carub.0007s0900 Capsella rubella HOM05D005366 ORTHO05D006323 1.0e-308 1063.5 1078 65.9
Thhalv10024180m.g Eutrema salsugineum HOM05D005366 ORTHO05D006323 2.7e-301 1038.9 1085 69.7
C01p07430 Brassica napus HOM05D005366 ORTHO05D006323 6.2e-290 1001.1 1077 70.8
Sp7g29400 Schrenkiella parvula HOM05D005366 ORTHO05D006323 4.2e-286 988.4 1059 69.4
CARHR239450 Cardamine hirsuta HOM05D005366 ORTHO05D006323 3.0e-284 982.2 1087 70.6
A03p60870 Brassica napus HOM05D005366 ORTHO05D006323 3.2e-278 962.2 1092 67.3
BraA03t15125Z Brassica rapa HOM05D005366 ORTHO05D006323 3.2e-278 962.2 1092 67.3
BcaNung01513 Brassica carinata HOM05D005366 ORTHO05D006323 2.1e-277 959.5 1092 67.8
BolC7t46324H Brassica oleracea HOM05D005366 ORTHO05D006323 4.6e-277 958.4 1093 67.5
C07p58760 Brassica napus HOM05D005366 ORTHO05D006323 7.9e-277 957.6 1093 67.7
BolC1t00725H Brassica oleracea HOM05D005366 ORTHO05D006323 2.8e-258 896.0 1077 65.6
BcaNung04128 Brassica carinata HOM05D005366 ORTHO05D006323 4.1e-249 865.5 1062 64.5
Aa31LG2G18730 Aethionema arabicum HOM05D005366 ORTHO05D006323 1.6e-245 853.6 1109 62.2
BcaC09g51938 Brassica carinata HOM05D005366 ORTHO05D006323 6.8e-228 795.0 1038 63.9
THA.LOC104803624 Tarenaya hassleriana HOM05D005366 ORTHO05D006323 2.0e-158 564.3 1100 49.5
Potri.018G008600 Populus trichocarpa HOM05D005366 ORTHO05D006323 3.1e-47 194.9 1153 33.8
TPR.G12019 Trifolium pratense HOM05D005366 ORTHO05D006323 5.0e-45 187.6 1061 34.7
Thecc.09G008500 Theobroma cacao HOM05D005366 ORTHO05D006323 7.2e-44 183.7 1130 35.3
Manes.16G134600 Manihot esculenta HOM05D005366 ORTHO05D006323 1.2e-43 183.0 1180 32.3
Haze_21759 Corylus avellana HOM05D005366 ORTHO05D006323 1.4e-42 179.5 1018 34.2
Gorai.001G002300 Gossypium raimondii HOM05D005366 ORTHO05D006323 1.7e-40 172.6 1056 32.0
TWI63G1827 Tripterygium wilfordii HOM05D005366 ORTHO05D006323 2.8e-40 171.8 1070 35.2
Duzib168G0091 Durio zibethinus HOM05D005366 ORTHO05D006323 4.1e-39 167.9 1128 34.4
Medtr1g009610 Medicago truncatula HOM05D005366 ORTHO05D006323 6.9e-39 167.2 1097 33.3
Ciclev10007223m.g Citrus clementina HOM05D005366 ORTHO05D006323 9.1e-39 166.8 1183 36.9
COL.COLO4_19020 Corchorus olitorius HOM05D005366 ORTHO05D006323 3.4e-38 164.9 1128 36.5
QL12p025430 Quercus lobata HOM05D005366 ORTHO05D006323 1.0e-37 163.3 1098 31.5
Gohir.D07G002400 Gossypium hirsutum HOM05D005366 ORTHO05D006323 8.5e-37 160.2 981 31.9
MD08G1126800 Malus domestica HOM05D005366 ORTHO05D006323 1.4e-34 152.9 862 38.2
Cpa.g.sc23.30 Carica papaya HOM05D005366 ORTHO05D006323 3.9e-34 151.4 331 39.9
Glyma.17G197200 Glycine max HOM05D005366 ORTHO05D006323 3.9e-34 151.4 1101 29.9
TPR.G21359 Trifolium pratense HOM05D005366 ORTHO05D006323 3.3e-33 148.3 1114 32.0
Actinidia06431 Actinidia chinensis HOM05D005366 ORTHO05D006323 4.4e-33 147.9 1045 32.2
VMungo0647G1874 Vigna mungo HOM05D005366 ORTHO05D006323 1.7e-32 146.0 1127 28.9
RcHm_v2.0_Chr6g0305291 Rosa chinensis HOM05D005366 ORTHO05D006323 4.8e-32 144.4 857 30.8
GSVIVG01033179001 Vitis vinifera HOM05D005366 ORTHO05D006323 4.5e-30 137.9 1155 28.2
Ca_01524_v3 Cicer arietinum L. HOM05D005366 ORTHO05D006323 7.7e-30 137.1 1095 33.5
Sed0008947 Sechium edule HOM05D005366 ORTHO05D006323 1.7e-29 136.0 851 34.3
Lalb_Chr22g0361211 Lupinus albus HOM05D005366 ORTHO05D006323 2.2e-29 135.6 1148 30.2
CANSAT25G3462 Cannabis sativa HOM05D005366 ORTHO05D006323 6.5e-29 134.0 1010 34.6
Phvul.001G060300 Phaseolus vulgaris HOM05D005366 ORTHO05D006323 8.5e-29 133.7 1110 29.1
Hma1.2p1_0272F.1_g109220 Hydrangea macrophylla HOM05D005366 ORTHO05D006323 2.7e-27 128.6 1181 33.4
Cpa.g.sc768.4 Carica papaya HOM05D005366 ORTHO05D006323 3.0e-26 125.2 346 33.8
vmacro00028 Vaccinium macrocarpon HOM05D005366 ORTHO05D006323 8.8e-26 123.6 440 28.0
TAR625G0579 Trochodendron aralioides HOM05D005366 ORTHO05D006323 3.3e-25 121.7 267 35.2
CsaV3_3G047150 Cucumis sativus L. HOM05D005366 ORTHO05D006323 1.7e-24 119.4 474 28.5
TAR625G0224 Trochodendron aralioides HOM05D005366 ORTHO05D006323 2.2e-24 119.0 330 31.8
Glyma.14G135900 Glycine max HOM05D005366 ORTHO05D006323 4.8e-24 117.9 1117 28.3
FAN15G0510 Fragaria x ananassa HOM05D005366 ORTHO05D006323 6.3e-24 117.5 482 26.8
Psat0s839g0040 Pisum sativum HOM05D005366 ORTHO05D006323 6.3e-24 117.5 858 36.2
Prupe.1G459000 Prunus persica HOM05D005366 ORTHO05D006323 3.1e-23 115.2 1088 33.4
PGR119G1611 Punica granatum HOM05D005366 ORTHO05D006323 5.3e-23 114.4 983 32.3
MELO3C003621.2 Cucumis melo HOM05D005366 ORTHO05D006323 1.6e-22 112.8 763 35.8
DCAR_000688 Daucus carota HOM05D005366 ORTHO05D006323 1.3e-21 109.8 1126 26.2
Lj5g0008306 Lotus japonicus HOM05D005366 ORTHO05D006323 8.5e-21 107.1 1093 31.9
MBI16_g05842_MAGBIO Magnolia biondii HOM05D005366 ORTHO05D006323 4.2e-20 104.8 1100 24.1
FAN20G2855 Fragaria x ananassa HOM05D005366 ORTHO05D006323 7.2e-20 104.0 1144 24.7
COL.COLO4_30023 Corchorus olitorius HOM05D005366 ORTHO05D006323 2.7e-19 102.1 350 28.0
Lj7C748G6 Lonicera japonica HOM05D005366 ORTHO05D006323 2.7e-19 102.1 1017 33.0
CiPaw.07G211400 Carya illinoinensis HOM05D005366 ORTHO05D006323 3.6e-19 101.7 972 33.1
Gohir.A07G002100 Gossypium hirsutum HOM05D005366 ORTHO05D006323 1.0e-18 100.1 1015 32.2
Oeu053860.1 Olea europaea HOM05D005366 ORTHO05D006323 5.2e-18 97.8 314 26.1
Aqoxy7G02854 Aquilegia oxysepala HOM05D005366 ORTHO05D006323 8.8e-18 97.1 487 24.8
Rhsim11G0005000 Rhododendron simsii HOM05D005366 ORTHO05D006323 8.8e-18 97.1 849 34.2
CAN.G673.20 Capsicum annuum HOM05D005366 ORTHO05D006323 5.7e-17 94.4 426 24.9
Nitab4.5_0008193g0020 Nicotiana tabacum HOM05D005366 ORTHO05D006323 7.5e-17 94.0 433 24.5
Solyc08g006420.3 Solanum lycopersicum HOM05D005366 ORTHO05D006323 9.8e-17 93.6 377 24.4
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 1.7e-16 92.8 67 77.6
FAN27G2425 Fragaria x ananassa HOM05D005366 ORTHO05D006323 6.3e-16 90.9 424 25.7
Sopen08g002360 Solanum pennellii HOM05D005366 ORTHO05D006323 1.8e-15 89.4 378 25.1
A05p42100 Brassica napus HOM05D004941 ORTHO05D006323 9.1e-15 87.0 67 74.6
PSO063G0316 Papaver somniferum HOM05D005366 ORTHO05D006323 5.0e-13 81.3 1015 20.9
FvH4_2g36740 Fragaria vesca HOM05D005366 ORTHO05D006323 1.1e-12 80.1 424 24.5
Gohir.A05G063400 Gossypium hirsutum HOM05D005366 ORTHO05D006323 1.5e-12 79.7 1085 27.8
Atru.chr7.2660 Acer truncatum HOM05D005366 ORTHO05D006323 7.2e-12 77.4 125 34.4
Dinv04518 Davidia involucrata HOM05D005366 ORTHO05D006323 2.1e-11 75.9 1128 30.9
Cc08_g06500 Coffea canephora HOM05D005366 ORTHO05D006323 3.6e-11 75.1 333 26.1
arahy.Tifrunner.gnm1.ann1.KT3XM2 Arachis hypogaea HOM05D005366 ORTHO05D006323 4.7e-11 74.7 390 25.1
MD15G1106500 Malus domestica HOM05D005366 ORTHO05D006323 1.0e-10 73.6 921 34.5
PSO170G4550 Papaver somniferum HOM05D005366 ORTHO05D006323 1.0e-10 73.6 481 23.3
arahy.Tifrunner.gnm1.ann1.MFD0CQ Arachis hypogaea HOM05D005366 ORTHO05D006323 1.4e-10 73.2 388 24.7
SGA_v2.0_scaffold193G40671 Striga asiatica HOM05D005366 ORTHO05D006323 2.3e-10 72.4 425 21.4
Psat3g095480 Pisum sativum HOM05D005366 ORTHO05D006323 1.5e-09 69.7 416 22.6
Nn8g40726 Nelumbo nucifera HOM05D005366 ORTHO05D006323 2.0e-09 69.3 830 23.6
Peaxi162Scf00045g00173 Petunia axillaris HOM05D005366 ORTHO05D006323 3.4e-09 68.6 1068 34.9
Nitab4.5_0000555g0160 Nicotiana tabacum HOM05D005366 ORTHO05D006323 7.5e-09 67.4 1089 28.7
RcHm_v2.0_Chr6g0305121 Rosa chinensis HOM05D005366 ORTHO05D006323 2.8e-08 65.5 149 32.2
Gohir.D05G066000 Gossypium hirsutum HOM05D005366 ORTHO05D006323 6.3e-08 64.3 837 31.5
MSTRG.25794 Avicennia marina HOM05D005366 ORTHO05D006323 8.3e-08 63.9 1139 22.5
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 8.3e-08 63.9 128 32.0
AUR62020289 Chenopodium quinoa HOM05D005366 ORTHO05D006323 1.8e-07 62.8 1145 30.7
EL10Ac2g02416 Beta vulgaris HOM05D005366 ORTHO05D006323 3.1e-07 62.0 994 29.5
AUR62037714 Chenopodium quinoa HOM05D005366 ORTHO05D006323 3.1e-07 62.0 1159 29.1
ATR0580G390 Amborella trichopoda HOM05D005366 ORTHO05D006323 5.9e-06 57.8 463 24.4


User provided reference genes

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