Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 6.6e-102 374.0 186 100.0
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 3.5e-42 175.6 94 91.5
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 5.0e-41 171.8 93 89.2
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 8.5e-41 171.0 108 81.5
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 8.5e-41 171.0 108 81.5
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 1.1e-40 170.6 94 88.3
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 1.9e-40 169.9 108 80.6
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 1.9e-40 169.9 108 80.6
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 1.9e-40 169.9 94 89.4
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 9.4e-40 167.5 108 78.7
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 1.6e-39 166.8 94 84.0
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 2.1e-39 166.4 94 85.1
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 3.6e-39 165.6 94 85.1
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 8.0e-39 164.5 94 85.1
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 1.4e-38 163.7 94 85.1
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 1.2e-34 150.6 94 81.9
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 7.2e-32 141.4 94 73.4
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 2.2e-28 129.8 94 57.4
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 3.7e-28 129.0 98 57.1
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 4.8e-28 128.6 98 60.2
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.4e-27 127.1 98 60.2
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.4e-27 127.1 98 54.1
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 2.4e-27 126.3 98 55.1
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 2.4e-27 126.3 98 58.2
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 3.1e-27 125.9 98 59.2
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 3.1e-27 125.9 94 58.5
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 4.1e-27 125.6 98 57.1
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 4.1e-27 125.6 98 59.2
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 5.4e-27 125.2 95 56.8
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 7.0e-27 124.8 94 58.5
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 9.1e-27 124.4 97 59.8
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 9.1e-27 124.4 98 59.2
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 1.6e-26 123.6 98 57.1
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 2.0e-26 123.2 98 56.1
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 2.0e-26 123.2 99 57.6
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 2.0e-26 123.2 98 57.1
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 2.7e-26 122.9 98 54.1
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 3.5e-26 122.5 98 54.1
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 3.5e-26 122.5 98 57.1
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 5.9e-26 121.7 95 55.8
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.3e-25 120.6 94 58.5
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 1.3e-25 120.6 103 56.3
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 2.9e-25 119.4 94 55.3
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 5.0e-25 118.6 94 55.3
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 6.6e-25 118.2 94 56.4
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 8.6e-25 117.9 94 55.3
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 1.1e-24 117.5 98 54.1
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.5e-24 117.1 94 55.3
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 1.9e-24 116.7 94 52.1
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 2.5e-24 116.3 98 56.1
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 2.5e-24 116.3 98 56.1
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 2.5e-24 116.3 102 52.9
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 2.5e-24 116.3 94 55.3
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 2.5e-24 116.3 94 55.3
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 3.3e-24 115.9 98 50.0
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 4.2e-24 115.5 98 52.0
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 4.2e-24 115.5 94 54.3
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 4.2e-24 115.5 98 53.1
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 5.5e-24 115.2 98 55.1
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 5.5e-24 115.2 102 52.0
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 5.5e-24 115.2 102 52.0
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 9.5e-24 114.4 98 53.1
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 9.5e-24 114.4 94 54.3
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 9.5e-24 114.4 98 55.1
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 1.2e-23 114.0 105 49.5
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 1.6e-23 113.6 98 53.1
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 1.6e-23 113.6 98 52.0
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.1e-23 113.2 98 52.0
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 2.8e-23 112.8 124 43.5
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 2.8e-23 112.8 98 51.0
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.6e-23 112.5 98 51.0
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 4.7e-23 112.1 94 54.3
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 4.7e-23 112.1 93 52.7
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 1.0e-22 110.9 98 51.0
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.0e-22 110.9 98 50.0
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.8e-22 110.2 99 50.5
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 2.3e-22 109.8 103 50.5
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 5.2e-22 108.6 94 50.0
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 5.2e-22 108.6 98 51.0
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 5.2e-22 108.6 98 51.0
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 6.8e-22 108.2 98 51.0
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.5e-21 107.1 98 51.0
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 3.4e-21 105.9 98 51.0
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 4.4e-21 105.5 102 47.1
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.3e-20 104.0 135 43.0
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 2.2e-20 103.2 94 51.1
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 2.8e-20 102.8 107 44.9
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 4.9e-20 102.1 98 50.0
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 1.1e-19 100.9 98 48.0
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 3.1e-19 99.4 93 47.3
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 5.4e-19 98.6 94 46.8
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 9.2e-19 97.8 70 64.3
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.6e-18 97.1 70 62.9
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 1.6e-18 97.1 94 46.8
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 7.8e-18 94.7 93 44.1
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 1.7e-17 93.6 82 50.0
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 2.3e-17 93.2 98 44.9
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 3.9e-17 92.4 70 55.7
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 8.6e-17 91.3 98 48.0
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 5.6e-16 88.6 100 44.0
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 1.8e-14 83.6 129 37.2
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 3.1e-14 82.8 100 34.0
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 4.0e-14 82.4 99 39.4
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 5.2e-14 82.0 92 40.2
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 6.8e-14 81.6 98 37.8
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 9.8e-13 77.8 107 35.5
AL3G48430 Arabidopsis lyrata HOM05D000229 ORTHO05D016563 2.4e-11 73.2 35 94.3
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 2.0e-10 70.1 38 86.8
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 6.0e-10 68.6 57 49.1
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.1e-08 64.3 130 35.4
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.5e-08 63.9 124 34.7


User provided reference genes

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