Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.9e-43 178.7 88 100.0
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 3.3e-43 177.9 88 98.9
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 3.3e-43 177.9 88 98.9
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 9.6e-43 176.4 88 97.7
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.1e-41 172.9 88 94.3
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.8e-41 172.2 88 95.5
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 4.0e-41 171.0 88 94.3
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 4.0e-41 171.0 88 94.3
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 4.0e-41 171.0 88 94.3
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 4.0e-41 171.0 88 94.3
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 4.0e-41 171.0 88 94.3
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 9.0e-41 169.9 88 93.2
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 1.2e-40 169.5 88 93.2
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.0e-40 168.7 88 92.0
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.0e-40 168.7 88 92.0
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 9.9e-40 166.4 86 91.9
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 9.9e-40 166.4 88 90.9
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 1.3e-39 166.0 88 88.6
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 1.7e-39 165.6 88 89.8
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 1.7e-39 165.6 88 89.8
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.7e-39 165.6 88 89.8
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 8.4e-39 163.3 88 88.6
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 1.1e-38 162.9 88 86.4
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.9e-38 162.2 88 85.2
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 2.4e-38 161.8 88 87.5
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 2.4e-38 161.8 88 87.5
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 2.4e-38 161.8 88 85.2
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 2.4e-38 161.8 88 85.2
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 2.4e-38 161.8 88 85.2
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 4.2e-38 161.0 88 86.4
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 5.4e-38 160.6 88 85.2
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 9.3e-38 159.8 88 84.1
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 1.2e-37 159.5 88 85.2
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.6e-37 159.1 88 84.1
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.6e-37 159.1 86 84.9
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 1.6e-37 159.1 88 85.2
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.6e-37 159.1 88 83.0
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.6e-37 159.1 88 83.0
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 2.1e-37 158.7 86 87.2
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 2.1e-37 158.7 88 84.1
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 3.5e-37 157.9 88 86.4
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 3.5e-37 157.9 87 83.9
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 4.6e-37 157.5 87 81.6
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 4.6e-37 157.5 88 84.1
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 4.6e-37 157.5 88 84.1
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 4.6e-37 157.5 88 84.1
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 4.6e-37 157.5 88 84.1
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 4.6e-37 157.5 88 81.8
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 6.0e-37 157.1 88 83.0
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 6.0e-37 157.1 88 83.0
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 6.0e-37 157.1 88 84.1
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 6.0e-37 157.1 88 83.0
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 7.9e-37 156.8 88 83.0
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 1.0e-36 156.4 88 83.0
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 1.0e-36 156.4 88 81.8
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.0e-36 156.4 88 81.8
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 1.3e-36 156.0 88 81.8
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.3e-36 156.0 88 83.0
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.3e-36 156.0 86 83.7
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 1.3e-36 156.0 88 83.0
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.8e-36 155.6 88 84.1
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.8e-36 155.6 88 84.1
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.3e-36 155.2 88 83.0
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.3e-36 155.2 88 83.0
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 3.0e-36 154.8 86 82.6
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 3.0e-36 154.8 86 82.6
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 3.9e-36 154.5 88 83.0
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 3.9e-36 154.5 88 81.8
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 3.9e-36 154.5 88 81.8
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.9e-36 154.5 88 80.7
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.9e-36 154.5 88 80.7
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.9e-36 154.5 88 80.7
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 6.7e-36 153.7 87 80.5
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 6.7e-36 153.7 88 80.7
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 8.7e-36 153.3 88 81.8
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 8.7e-36 153.3 88 80.7
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 8.7e-36 153.3 88 84.1
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 8.7e-36 153.3 86 81.4
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 8.7e-36 153.3 86 81.4
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 1.1e-35 152.9 88 80.7
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 1.1e-35 152.9 88 83.0
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 1.1e-35 152.9 88 81.8
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.5e-35 152.5 86 81.4
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 1.5e-35 152.5 86 80.2
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 1.5e-35 152.5 88 81.8
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 1.9e-35 152.1 88 78.4
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 1.9e-35 152.1 88 79.5
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.9e-35 152.1 88 80.7
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 2.5e-35 151.8 88 80.7
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 3.3e-35 151.4 88 80.7
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 3.3e-35 151.4 88 78.4
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 3.3e-35 151.4 88 79.5
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 3.3e-35 151.4 88 77.3
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 4.3e-35 151.0 88 78.4
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 4.3e-35 151.0 88 78.4
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 4.3e-35 151.0 88 79.5
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 7.4e-35 150.2 86 81.4
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 7.4e-35 150.2 88 79.5
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 7.4e-35 150.2 88 79.5
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 9.6e-35 149.8 88 76.1
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 9.6e-35 149.8 88 77.3
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 9.6e-35 149.8 87 79.3
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 9.6e-35 149.8 88 79.5
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 1.3e-34 149.4 88 76.1
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 1.3e-34 149.4 81 88.9
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 1.3e-34 149.4 81 88.9
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.3e-34 149.4 87 78.2
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.3e-34 149.4 88 77.3
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.3e-34 149.4 88 76.1
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 1.6e-34 149.1 88 75.0
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 1.6e-34 149.1 88 76.1
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 1.6e-34 149.1 88 77.3
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 2.1e-34 148.7 81 87.7
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 2.1e-34 148.7 88 78.4
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 2.1e-34 148.7 88 75.0
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 2.1e-34 148.7 88 76.1
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.1e-34 148.7 87 79.3
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 2.8e-34 148.3 88 77.3
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 2.8e-34 148.3 88 77.3
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.8e-34 148.3 88 79.5
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 2.8e-34 148.3 88 77.3
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 3.7e-34 147.9 88 75.0
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 6.2e-34 147.1 88 75.0
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 8.1e-34 146.7 88 77.3
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 1.1e-33 146.4 88 76.1
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 1.4e-33 146.0 86 80.2
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.4e-33 146.0 88 77.3
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 1.4e-33 146.0 88 76.1
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 9.0e-33 143.3 88 76.1
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 4.9e-31 137.5 92 75.0
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 2.5e-30 135.2 88 71.6
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 6.0e-29 130.6 132 53.0
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 1.5e-27 125.9 63 85.7
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 3.7e-26 121.3 88 59.1
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 4.8e-26 120.9 78 73.1
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 4.8e-26 120.9 78 73.1
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 4.9e-23 110.9 85 57.6
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 1.0e-20 103.2 68 73.5
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 1.0e-20 103.2 68 73.5
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 3.9e-20 101.3 85 52.9
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.1e-19 99.8 63 76.2
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 2.5e-14 82.0 94 54.3
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 2.5e-14 82.0 94 54.3
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 1.1e-11 73.2 88 50.0
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 1.1e-11 73.2 88 50.0
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.3e-10 69.7 85 38.8
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 2.2e-10 68.9 51 62.7
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 1.5e-08 62.8 54 61.1
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 7.7e-08 60.5 52 50.0
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 5.0e-07 57.8 52 55.8
BcaC05g26219 Brassica carinata HOM05D004292 ORTHO05D005206 4.2e-06 54.7 34 70.6


User provided reference genes

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