Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.1e-129 465.3 268 100.0
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.4e-68 263.1 260 58.5
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 5.9e-59 231.9 266 54.9
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.8e-44 183.7 165 53.9
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 1.8e-44 183.7 251 44.6
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 1.5e-43 180.6 261 46.7
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 7.7e-43 178.3 243 44.0
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 1.1e-41 174.5 252 46.4
AT3G05450 Arabidopsis thaliana HOM05D004201 ORTHO05D011677 4.2e-41 172.6 271 43.5
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.1e-40 170.2 268 42.2
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.7e-40 169.9 156 53.8
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 3.9e-39 166.0 239 42.7
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.1e-38 164.5 261 41.8
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.1e-38 164.5 261 41.8
AL1G56010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.1e-36 157.9 261 40.6
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.3e-34 151.0 167 46.7
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.5e-33 146.7 254 39.0
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 7.2e-33 145.2 156 50.0
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 7.2e-33 145.2 259 39.8
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 7.2e-33 145.2 241 42.3
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.6e-32 142.9 155 47.7
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.3e-31 140.2 259 39.4
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 1.8e-28 130.6 160 45.6
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 1.2e-24 117.9 166 40.4
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.6e-24 117.5 240 35.4
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 6.1e-24 115.5 166 39.8
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 8.0e-24 115.2 176 39.8
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 1.8e-23 114.0 173 41.0
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 5.2e-23 112.5 165 40.6
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 5.2e-23 112.5 165 40.0
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.2e-22 111.3 84 58.3
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 2.0e-22 110.5 176 40.9
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 4.4e-22 109.4 84 58.3
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 6.3e-21 105.5 243 35.0
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 2.4e-20 103.6 168 38.1
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 4.1e-20 102.8 168 36.3
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 4.1e-20 102.8 238 37.4
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 7.0e-20 102.1 167 37.7
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 7.0e-20 102.1 168 38.7
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 1.2e-19 101.3 165 38.2
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.3e-18 97.8 169 41.4
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 2.3e-18 97.1 175 37.7
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 2.3e-18 97.1 175 37.7
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 2.3e-18 97.1 175 37.7
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 3.8e-18 96.3 168 39.9
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 6.6e-18 95.5 174 39.1
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 6.6e-18 95.5 168 39.3
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 8.6e-18 95.1 160 38.1
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 8.6e-18 95.1 162 37.0
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 8.6e-18 95.1 168 38.7
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 8.6e-18 95.1 168 38.7
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 1.9e-17 94.0 168 38.7
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 1.9e-17 94.0 175 37.1
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 2.5e-17 93.6 165 38.8
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.5e-17 93.6 241 37.3
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 3.3e-17 93.2 162 37.0
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.2e-17 92.8 173 36.4
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 4.2e-17 92.8 172 39.0
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 4.2e-17 92.8 168 38.7
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 4.2e-17 92.8 163 37.4
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 7.2e-17 92.0 165 36.4
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 7.2e-17 92.0 162 37.7
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 9.5e-17 91.7 170 37.6
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-16 90.9 165 37.0
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-16 90.9 163 37.4
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 1.6e-16 90.9 163 37.4
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.1e-16 90.5 160 37.5
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 2.1e-16 90.5 163 37.4
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.8e-16 90.1 256 34.0
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 2.8e-16 90.1 168 36.9
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 3.6e-16 89.7 163 36.8
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 3.6e-16 89.7 163 40.5
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 3.6e-16 89.7 163 40.5
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 4.7e-16 89.4 163 36.8
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 4.7e-16 89.4 175 36.0
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 8.0e-16 88.6 162 35.2
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 8.0e-16 88.6 165 40.0
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.0e-15 88.2 234 32.9
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-15 88.2 158 36.7
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 1.0e-15 88.2 168 38.1
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 1.0e-15 88.2 163 36.8
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 1.4e-15 87.8 169 34.3
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 1.4e-15 87.8 163 37.4
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.4e-15 87.8 261 32.6
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.8e-15 87.4 164 39.0
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 3.0e-15 86.7 170 36.5
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 3.0e-15 86.7 168 36.9
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 4.0e-15 86.3 162 37.7
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 4.0e-15 86.3 162 35.2
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 8.9e-15 85.1 143 38.5
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 8.9e-15 85.1 168 36.3
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 8.9e-15 85.1 175 34.3
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 8.9e-15 85.1 175 34.3
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 8.9e-15 85.1 162 35.2
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 1.2e-14 84.7 188 35.6
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 1.5e-14 84.3 173 35.3
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.5e-14 84.3 247 30.0
AL6G49300 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 2.0e-14 84.0 175 36.0
Sp6g03580 Schrenkiella parvula HOM05D012310 ORTHO05D012594 2.0e-14 84.0 164 32.9
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.0e-14 84.0 158 34.2
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 2.6e-14 83.6 173 34.7
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 2.6e-14 83.6 72 52.8
CARHR252000 Cardamine hirsuta HOM05D012310 ORTHO05D012594 2.6e-14 83.6 162 34.0
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 4.4e-14 82.8 166 37.3
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 5.7e-14 82.4 155 39.4
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 7.5e-14 82.0 163 36.8
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 7.5e-14 82.0 162 34.0
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 9.8e-14 81.6 165 34.5
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-13 81.3 165 35.2
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 1.3e-13 81.3 164 34.8
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 1.7e-13 80.9 162 34.6
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.2e-13 80.5 241 30.7
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 2.8e-13 80.1 163 38.7
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 2.8e-13 80.1 162 34.6
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.7e-13 79.7 162 32.1
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 4.9e-13 79.3 168 36.3
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 6.3e-13 79.0 162 37.0
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 6.3e-13 79.0 162 37.0
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-12 78.2 165 35.8
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-12 77.8 168 36.3
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 1.8e-12 77.4 265 31.7
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 2.4e-12 77.0 184 32.6
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.2e-12 76.6 141 38.3
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.1e-12 76.3 172 34.3
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 4.1e-12 76.3 129 38.8
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 4.1e-12 76.3 159 35.8
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 4.1e-12 76.3 164 35.4
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 4.1e-12 76.3 265 31.3
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 5.4e-12 75.9 164 35.4
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 5.4e-12 75.9 164 35.4
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 5.4e-12 75.9 164 35.4
THA.LOC104801562 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.4e-12 75.9 163 33.1
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.0e-12 75.5 164 35.4
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 7.0e-12 75.5 189 31.7
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.2e-11 74.7 163 32.5
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.2e-11 74.7 267 31.5
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.0e-11 73.9 169 30.8
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.0e-11 73.9 161 32.9
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 2.0e-11 73.9 166 34.9
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 2.0e-11 73.9 178 33.7
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 2.0e-11 73.9 178 33.7
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 4.5e-11 72.8 169 33.1
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 7.8e-11 72.0 152 35.5
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 1.0e-10 71.6 162 32.7
AL3G16020 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.3e-10 71.2 38 81.6
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.7e-10 70.9 163 30.1
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.7e-10 70.9 163 30.7
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 1.7e-10 70.9 162 32.7
THA.LOC104801560 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.9e-10 69.7 230 29.6
AT3G05685 Arabidopsis thaliana HOM05D004201 ORTHO05D031360 2.5e-09 67.0 98 40.8
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 3.3e-09 66.6 157 33.1
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 4.3e-09 66.2 164 32.9
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 5.6e-09 65.9 81 42.0
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.3e-09 65.5 164 32.3
Aa31LG11G12530 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.3e-09 65.5 181 30.9
THA.LOC104801558 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 9.5e-09 65.1 220 29.5
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 2.1e-08 63.9 160 31.9
Aa31LG6G14470 Aethionema arabicum HOM05D004201 ORTHO05D011677 8.0e-08 62.0 58 51.7
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 8.0e-08 62.0 125 36.8
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.4e-07 61.2 97 36.1
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 1.4e-07 61.2 125 36.8
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 6.8e-07 58.9 192 28.6
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 8.9e-07 58.5 153 32.0
CSS0008827 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 3.4e-06 56.6 139 29.5
CSS0009631 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 3.4e-06 56.6 147 26.5
CSS0021925 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 3.4e-06 56.6 139 29.5
CSS0013123 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 4.4e-06 56.2 139 30.2
CSS0032446 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 4.4e-06 56.2 139 30.2
THA.LOC104809658 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 5.8e-06 55.8 108 36.1
CSS0006348 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 7.5e-06 55.5 139 30.2


User provided reference genes

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