Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G41800 Arabidopsis lyrata HOM05D006831 ORTHO05D008256 8.5e-163 577.0 308 100.0
AT1G79760 Arabidopsis thaliana HOM05D006831 ORTHO05D008256 2.4e-141 505.8 310 85.5
Carub.0002s2775 Capsella rubella HOM05D006831 ORTHO05D008256 1.1e-133 480.3 311 80.7
CARHR262750 Cardamine hirsuta HOM05D006831 ORTHO05D008256 3.9e-123 445.3 306 76.5
A07p26290 Brassica napus HOM05D006831 ORTHO05D008256 2.0e-111 406.4 318 75.5
BraA07t30273Z Brassica rapa HOM05D006831 ORTHO05D008256 2.0e-111 406.4 318 75.5
C06p28690 Brassica napus HOM05D006831 ORTHO05D008256 2.9e-110 402.5 314 75.8
BolC6t38038H Brassica oleracea HOM05D006831 ORTHO05D008256 6.4e-110 401.4 272 76.8
Sp5g36010 Schrenkiella parvula HOM05D006831 ORTHO05D008256 1.1e-109 400.6 320 70.0
Thhalv10018887m.g Eutrema salsugineum HOM05D006831 ORTHO05D008256 1.4e-109 400.2 326 75.2
BcaC08g45266 Brassica carinata HOM05D006831 ORTHO05D008256 2.2e-102 376.3 304 71.4
Aa31LG4G70 Aethionema arabicum HOM05D006831 ORTHO05D008256 1.3e-83 313.9 329 55.9
Ciclev10025849m.g Citrus clementina HOM05D006831 ORTHO05D008256 2.0e-50 203.8 361 38.0
Thecc.06G098700 Theobroma cacao HOM05D006831 ORTHO05D008256 5.9e-47 192.2 362 37.3
Gorai.003G062200 Gossypium raimondii HOM05D006831 ORTHO05D008256 1.3e-46 191.0 365 39.5
Duzib235G1306 Durio zibethinus HOM05D006831 ORTHO05D008256 1.7e-46 190.7 365 38.6
CARHR262770 Cardamine hirsuta HOM05D006831 ORTHO05D008256 2.2e-46 190.3 113 82.3
Gorai.011G071900 Gossypium raimondii HOM05D006831 ORTHO05D008256 2.9e-46 189.9 367 37.6
Gohir.D03G058400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 3.8e-46 189.5 363 38.8
Gohir.A10G066100 Gossypium hirsutum HOM05D006831 ORTHO05D008256 6.5e-46 188.7 367 37.6
THA.LOC104801499 Tarenaya hassleriana HOM05D006831 ORTHO05D008256 1.5e-45 187.6 313 41.9
CiPaw.01G232000 Carya illinoinensis HOM05D006831 ORTHO05D008256 1.9e-45 187.2 358 42.2
COL.COLO4_30498 Corchorus olitorius HOM05D006831 ORTHO05D008256 2.5e-45 186.8 369 36.6
Gohir.D10G067400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 2.5e-45 186.8 371 37.2
vmacro18857 Vaccinium macrocarpon HOM05D006831 ORTHO05D008256 3.2e-45 186.4 358 36.3
DCAR_016191 Daucus carota HOM05D006831 ORTHO05D008256 4.2e-45 186.0 341 37.8
Gohir.A02G117700 Gossypium hirsutum HOM05D006831 ORTHO05D008256 5.5e-45 185.7 364 38.7
Atru.chr1.3517 Acer truncatum HOM05D006831 ORTHO05D008256 1.2e-44 184.5 371 36.1
Dinv30442 Davidia involucrata HOM05D006831 ORTHO05D008256 1.2e-44 184.5 362 37.0
Rhsim08G0227100 Rhododendron simsii HOM05D006831 ORTHO05D008256 2.1e-44 183.7 357 37.3
CSS0014632 Camellia sinensis var. sinensis HOM05D006831 ORTHO05D008256 4.7e-44 182.6 363 36.4
Hma1.2p1_0430F.1_g151466 Hydrangea macrophylla HOM05D006831 ORTHO05D008256 3.0e-43 179.9 368 36.1
Sed0018864 Sechium edule HOM05D006831 ORTHO05D008256 8.8e-43 178.3 349 39.5
CARHR074700 Cardamine hirsuta HOM05D006831 ORTHO05D008256 1.5e-42 177.6 130 73.1
Actinidia21708 Actinidia chinensis HOM05D006831 ORTHO05D008256 5.7e-42 175.6 362 36.5
RcHm_v2.0_Chr2g0140341 Rosa chinensis HOM05D006831 ORTHO05D008256 5.7e-42 175.6 366 36.9
QL05p020342 Quercus lobata HOM05D006831 ORTHO05D008256 7.5e-42 175.3 365 38.4
Cc04_g02630 Coffea canephora HOM05D006831 ORTHO05D008256 1.3e-41 174.5 360 35.8
ClCG00G002730 Citrullus lanatus HOM05D006831 ORTHO05D008256 2.2e-41 173.7 366 38.8
ClCG07G013280 Citrullus lanatus HOM05D006831 ORTHO05D008256 2.2e-41 173.7 366 38.8
FvH4_6g32300 Fragaria vesca HOM05D006831 ORTHO05D008256 2.2e-41 173.7 365 37.0
Peaxi162Scf00038g00918 Petunia axillaris HOM05D006831 ORTHO05D008256 2.2e-41 173.7 364 35.2
Prupe.3G060100 Prunus persica HOM05D006831 ORTHO05D008256 2.2e-41 173.7 364 36.8
TAR626G1633 Trochodendron aralioides HOM05D006831 ORTHO05D008256 3.7e-41 172.9 363 35.3
FAN05G2796 Fragaria x ananassa HOM05D006831 ORTHO05D008256 4.8e-41 172.6 369 36.6
FAN14G1280 Fragaria x ananassa HOM05D006831 ORTHO05D008256 1.1e-40 171.4 348 37.9
FAN02G3719 Fragaria x ananassa HOM05D006831 ORTHO05D008256 1.4e-40 171.0 364 36.8
Cfa003655 Carpinus fangiana HOM05D006831 ORTHO05D008256 1.8e-40 170.6 363 36.9
TWI12G0407 Tripterygium wilfordii HOM05D006831 ORTHO05D008256 2.4e-40 170.2 379 34.8
Nn6g35309 Nelumbo nucifera HOM05D006831 ORTHO05D008256 3.1e-40 169.9 367 33.5
Glyma.07G015900 Glycine max HOM05D006831 ORTHO05D008256 5.4e-40 169.1 352 36.4
Manes.11G034300 Manihot esculenta HOM05D006831 ORTHO05D008256 7.0e-40 168.7 279 40.9
Lj5A54G57 Lonicera japonica HOM05D006831 ORTHO05D008256 9.1e-40 168.3 346 35.3
CAN.G1143.6 Capsicum annuum HOM05D006831 ORTHO05D008256 1.2e-39 167.9 366 34.2
Glyma.08G201400 Glycine max HOM05D006831 ORTHO05D008256 1.6e-39 167.5 353 36.3
Lj3g0006655 Lotus japonicus HOM05D006831 ORTHO05D008256 1.6e-39 167.5 367 35.7
Potri.001G189400 Populus trichocarpa HOM05D006831 ORTHO05D008256 2.7e-39 166.8 365 34.8
ECA247G2417 Erigeron canadensis HOM05D006831 ORTHO05D008256 7.7e-39 165.2 323 36.2
PGR102G2866 Punica granatum HOM05D006831 ORTHO05D008256 7.7e-39 165.2 366 36.6
Sabra11G0033200 Salix brachista HOM05D006831 ORTHO05D008256 7.7e-39 165.2 363 36.4
CsaV3_3G023650 Cucumis sativus L. HOM05D006831 ORTHO05D008256 1.0e-38 164.9 385 37.9
MD09G1204500 Malus domestica HOM05D006831 ORTHO05D008256 1.3e-38 164.5 367 36.5
MBI04_g30107_MAGBIO Magnolia biondii HOM05D006831 ORTHO05D008256 2.3e-38 163.7 366 35.5
Haze_06254 Corylus avellana HOM05D006831 ORTHO05D008256 3.8e-38 162.9 314 36.0
TAR383G0884 Trochodendron aralioides HOM05D006831 ORTHO05D008256 3.8e-38 162.9 371 34.2
VMungo0331G1511 Vigna mungo HOM05D006831 ORTHO05D008256 3.8e-38 162.9 370 33.2
Cpa.g.sc109.6 Carica papaya HOM05D006831 ORTHO05D008256 6.6e-38 162.2 277 40.4
Lalb_Chr04g0262951 Lupinus albus HOM05D006831 ORTHO05D008256 6.6e-38 162.2 362 34.8
Sabra01G0151300 Salix brachista HOM05D006831 ORTHO05D008256 8.6e-38 161.8 366 35.5
Phvul.010G145700 Phaseolus vulgaris HOM05D006831 ORTHO05D008256 1.1e-37 161.4 357 35.3
MSTRG.11030 Avicennia marina HOM05D006831 ORTHO05D008256 1.9e-37 160.6 370 31.6
Potri.011G047800 Populus trichocarpa HOM05D006831 ORTHO05D008256 4.2e-37 159.5 367 35.1
CiPaw.02G146100 Carya illinoinensis HOM05D006831 ORTHO05D008256 9.5e-37 158.3 370 34.6
PGSC0003DMG400002528 Solanum tuberosum HOM05D006831 ORTHO05D008256 1.2e-36 157.9 368 32.9
Lsat_1_v5_gn_1_36980 Lactuca sativa HOM05D006831 ORTHO05D008256 1.6e-36 157.5 367 35.1
Oeu050599.1 Olea europaea HOM05D006831 ORTHO05D008256 1.6e-36 157.5 361 32.1
Eucgr.F03071 Eucalyptus grandis HOM05D006831 ORTHO05D008256 2.1e-36 157.1 372 34.1
Sopen03g039800 Solanum pennellii HOM05D006831 ORTHO05D008256 3.6e-36 156.4 365 32.9
arahy.Tifrunner.gnm1.ann1.4LXS91 Arachis hypogaea HOM05D006831 ORTHO05D008256 4.7e-36 156.0 369 33.1
arahy.Tifrunner.gnm1.ann1.U3LBHC Arachis hypogaea HOM05D006831 ORTHO05D008256 6.1e-36 155.6 369 33.3
CANSAT56G0873 Cannabis sativa HOM05D006831 ORTHO05D008256 6.1e-36 155.6 373 33.2
Solyc03g120970.3 Solanum lycopersicum HOM05D006831 ORTHO05D008256 8.0e-36 155.2 365 33.2
Aqoxy7G01449 Aquilegia oxysepala HOM05D006831 ORTHO05D008256 2.0e-34 150.6 365 31.8
Medtr8g014330 Medicago truncatula HOM05D006831 ORTHO05D008256 5.7e-34 149.1 375 32.3
EL10Ac9g21213 Beta vulgaris HOM05D006831 ORTHO05D008256 9.8e-34 148.3 365 30.1
AUR62031907 Chenopodium quinoa HOM05D006831 ORTHO05D008256 9.8e-34 148.3 358 31.3
HanXRQChr02g0032201 Helianthus annuus HOM05D006831 ORTHO05D008256 9.8e-34 148.3 366 32.5
Lsat_1_v5_gn_5_134400 Lactuca sativa HOM05D006831 ORTHO05D008256 3.7e-33 146.4 289 36.3
TPR.G29201 Trifolium pratense HOM05D006831 ORTHO05D008256 1.1e-32 144.8 372 31.7
Ca_23268_v3 Cicer arietinum L. HOM05D006831 ORTHO05D008256 3.1e-32 143.3 309 34.3
HanXRQChr10g0313251 Helianthus annuus HOM05D006831 ORTHO05D008256 3.1e-32 143.3 372 33.9
Ah.01g022020 Amaranthus hybridus HOM05D006831 ORTHO05D008256 7.0e-32 142.1 285 34.4
Psat4g221040 Pisum sativum HOM05D006831 ORTHO05D008256 4.5e-31 139.4 287 37.6
SGA_v2.0_scaffold66G22536 Striga asiatica HOM05D001613 ORTHO05D008256 4.5e-31 139.4 315 35.6
SalBow2G3477 Salvia bowleyana HOM05D006831 ORTHO05D008256 3.9e-30 136.3 286 32.9
Nitab4.5_0012387g0010 Nicotiana tabacum HOM05D006831 ORTHO05D008256 1.1e-29 134.8 366 30.6
AUR62022199 Chenopodium quinoa HOM05D006831 ORTHO05D008256 2.5e-29 133.7 284 32.0
Phvul.005G166600 Phaseolus vulgaris HOM05D006831 ORTHO05D008256 1.4e-27 127.9 343 30.6
PSO210G4514 Papaver somniferum HOM05D006831 ORTHO05D008256 3.1e-27 126.7 402 27.6
VMungo1080G0645 Vigna mungo HOM05D006831 ORTHO05D008256 2.2e-25 120.6 347 29.7
PSO210G6112 Papaver somniferum HOM05D006831 ORTHO05D008256 1.1e-24 118.2 402 27.1
Actinidia32697 Actinidia chinensis HOM05D006831 ORTHO05D008256 2.5e-21 107.1 152 41.4
GSVIVG01017000001 Vitis vinifera HOM05D006831 ORTHO05D008256 2.1e-20 104.0 160 40.0
MELO3C012995.2 Cucumis melo HOM05D006831 ORTHO05D008256 2.8e-20 103.6 382 32.7
Nitab4.5_0009505g0020 Nicotiana tabacum HOM05D006831 ORTHO05D008256 8.9e-19 98.6 98 48.0
Migut.I00901 Erythranthe guttata HOM05D006831 ORTHO05D008256 1.2e-18 98.2 163 37.4
Zm00001eb153550 Zea mays HOM05D006831 ORTHO05D008256 5.8e-18 95.9 359 27.6
VMungo0331G1726 Vigna mungo HOM05D006831 ORTHO05D008256 1.3e-17 94.7 254 31.1
ATR0705G209 Amborella trichopoda HOM05D006831 ORTHO05D008256 2.4e-16 90.5 99 47.5
Os01g0744200 Oryza sativa ssp. japonica HOM05D006831 ORTHO05D008256 1.7e-14 84.3 314 27.1
HPP92_006371 Vanilla planifolia HOM05D006831 ORTHO05D008256 5.1e-14 82.8 312 27.2
TAR636G2144 Trochodendron aralioides HOM05D006353 ORTHO05D007993 8.1e-12 75.5 345 26.7
Dinv25324 Davidia involucrata HOM05D006353 ORTHO05D007993 3.1e-11 73.6 348 27.0
FvH4_6g10130 Fragaria vesca HOM05D006353 ORTHO05D007993 3.4e-10 70.1 335 24.2
FAN05G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 5.8e-10 69.3 326 23.6
FAN09G0411 Fragaria x ananassa HOM05D006353 ORTHO05D007993 5.8e-10 69.3 323 24.5
RcHm_v2.0_Chr3g0460831 Rosa chinensis HOM05D006353 ORTHO05D007993 7.5e-10 68.9 325 23.4
Migut.J00057 Erythranthe guttata HOM05D006353 ORTHO05D007993 1.3e-09 68.2 332 26.5
FAN14G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 1.3e-09 68.2 335 23.9
TPR.G25775 Trifolium pratense HOM05D006831 ORTHO05D008256 1.7e-09 67.8 97 41.2
Atru.chr8.2382 Acer truncatum HOM05D006353 ORTHO05D007993 3.7e-09 66.6 348 25.6
Hund00686 Selenicereus undatus HOM05D006831 ORTHO05D008256 3.7e-09 66.6 82 40.2
arahy.Tifrunner.gnm1.ann1.0YL58U Arachis hypogaea HOM05D006353 ORTHO05D007993 4.9e-09 66.2 331 24.2
PSO384G1417 Papaver somniferum HOM05D007537 ORTHO05D009602 4.9e-09 66.2 305 25.2
arahy.Tifrunner.gnm1.ann1.FA4IPG Arachis hypogaea HOM05D006353 ORTHO05D007993 6.4e-09 65.9 331 24.2
Lj1g0007888 Lotus japonicus HOM05D006353 ORTHO05D007993 6.4e-09 65.9 333 26.1
GSVIVG01030203001 Vitis vinifera HOM05D006353 ORTHO05D007993 6.4e-09 65.9 350 26.6
Prupe.6G291400 Prunus persica HOM05D006353 ORTHO05D007993 8.3e-09 65.5 343 23.0
Medtr7g072635 Medicago truncatula HOM05D006353 ORTHO05D007993 1.1e-08 65.1 332 25.3
Medtr7g072870 Medicago truncatula HOM05D006353 ORTHO05D007993 1.1e-08 65.1 332 25.3
Sabra04G0151900 Salix brachista HOM05D006353 ORTHO05D007993 1.1e-08 65.1 344 26.5
AUR62006369 Chenopodium quinoa HOM05D006353 ORTHO05D007993 1.4e-08 64.7 337 26.1
Sc15g0002090 Simmondsia chinensis HOM05D006831 ORTHO05D008256 1.4e-08 64.7 88 43.2
Actinidia11518 Actinidia chinensis HOM05D006353 ORTHO05D007993 2.4e-08 63.9 347 25.4
Aqoxy2G00863 Aquilegia oxysepala HOM05D007537 ORTHO05D009602 2.4e-08 63.9 303 26.1
FAN05G5674 Fragaria x ananassa HOM05D006353 ORTHO05D007993 2.4e-08 63.9 318 23.9
Haze_02695 Corylus avellana HOM05D006831 ORTHO05D008256 3.2e-08 63.5 52 53.8
Sc07g0005810 Simmondsia chinensis HOM05D006353 ORTHO05D007993 5.4e-08 62.8 351 25.1
vmacro20360 Vaccinium macrocarpon HOM05D006353 ORTHO05D007993 5.4e-08 62.8 331 24.2
Lalb_Chr19g0124031 Lupinus albus HOM05D006353 ORTHO05D007993 9.2e-08 62.0 341 24.0
Actinidia13942 Actinidia chinensis HOM05D007537 ORTHO05D009602 1.6e-07 61.2 271 28.4
Haze_21157 Corylus avellana HOM05D006353 ORTHO05D007993 1.6e-07 61.2 274 26.6
TAR633G2636 Trochodendron aralioides HOM05D007537 ORTHO05D009602 6.0e-07 59.3 295 26.4
GSVIVG01032801001 Vitis vinifera HOM05D007537 ORTHO05D009602 6.0e-07 59.3 277 25.6
Cfa017056 Carpinus fangiana HOM05D006353 ORTHO05D007993 7.8e-07 58.9 339 25.7
vmacro10037 Vaccinium macrocarpon HOM05D007537 ORTHO05D009602 7.8e-07 58.9 299 26.1
EL10Ac7g17070 Beta vulgaris HOM05D006353 ORTHO05D007993 1.0e-06 58.5 341 25.8
PGSC0003DMG400004416 Solanum tuberosum HOM05D006353 ORTHO05D007993 1.7e-06 57.8 282 22.7
Rhsim05G0229500 Rhododendron simsii HOM05D006353 ORTHO05D007993 3.0e-06 57.0 342 24.0
CiPaw.09G219300 Carya illinoinensis HOM05D006353 ORTHO05D007993 3.9e-06 56.6 324 24.4
Os01g0823400 Oryza sativa ssp. japonica HOM05D006353 ORTHO05D007993 5.1e-06 56.2 359 26.5
Potri.016G134500 Populus trichocarpa HOM05D006353 ORTHO05D007993 5.1e-06 56.2 345 24.3
MBI04_g17294_MAGBIO Magnolia biondii HOM05D006831 ORTHO05D008256 8.6e-06 55.5 97 38.1
Nn2g10869 Nelumbo nucifera HOM05D007537 ORTHO05D009602 8.6e-06 55.5 271 25.8


User provided reference genes

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