Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 2.4e-95 352.1 164 100.0
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 1.2e-49 200.3 146 69.9
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 9.8e-49 197.2 146 68.5
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 2.2e-48 196.1 147 66.7
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 4.9e-48 194.9 148 68.9
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 7.0e-47 191.0 146 64.4
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 2.0e-46 189.5 148 62.2
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 5.6e-44 181.4 148 61.5
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 5.6e-44 181.4 148 61.5
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 7.3e-44 181.0 146 62.3
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 1.6e-43 179.9 146 62.3
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 4.0e-42 175.3 148 60.1
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 8.3e-40 167.5 172 52.3
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 5.6e-36 154.8 146 51.4
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 1.8e-34 149.8 148 56.8
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 1.3e-29 133.7 147 49.7
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 1.6e-27 126.7 148 49.3
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 1.6e-27 126.7 148 49.3
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 2.1e-27 126.3 165 43.6
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 2.8e-27 125.9 165 43.6
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 3.6e-27 125.6 159 44.7
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 4.7e-27 125.2 149 45.6
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 1.8e-26 123.2 161 41.6
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 4.0e-26 122.1 148 43.9
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 8.9e-26 120.9 148 41.9
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 2.0e-25 119.8 166 39.2
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 2.0e-25 119.8 148 43.2
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 3.4e-25 119.0 155 43.2
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 4.4e-25 118.6 148 42.6
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 4.4e-25 118.6 157 43.9
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 4.4e-25 118.6 166 39.8
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 5.8e-25 118.2 150 44.7
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 5.8e-25 118.2 148 42.6
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 5.8e-25 118.2 147 44.2
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 9.9e-25 117.5 160 41.2
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 9.9e-25 117.5 158 40.5
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 1.3e-24 117.1 161 39.8
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 1.7e-24 116.7 161 39.8
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 1.7e-24 116.7 160 42.5
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 2.9e-24 115.9 170 41.8
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 2.9e-24 115.9 151 43.0
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 3.7e-24 115.5 148 44.6
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 3.7e-24 115.5 151 41.7
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 6.4e-24 114.8 157 42.7
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 6.4e-24 114.8 165 39.4
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 8.3e-24 114.4 157 42.7
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 8.3e-24 114.4 153 39.9
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 1.1e-23 114.0 165 38.8
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 2.4e-23 112.8 168 41.7
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 3.2e-23 112.5 168 41.7
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 3.2e-23 112.5 177 39.0
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 3.2e-23 112.5 149 41.6
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 4.1e-23 112.1 148 41.9
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 4.1e-23 112.1 168 41.7
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 4.1e-23 112.1 149 40.9
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 4.1e-23 112.1 153 41.2
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 5.4e-23 111.7 157 42.0
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 5.4e-23 111.7 148 45.9
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 5.4e-23 111.7 150 43.3
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 7.1e-23 111.3 151 43.7
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 1.2e-22 110.5 149 37.6
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 1.6e-22 110.2 146 43.2
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 2.7e-22 109.4 166 38.6
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 3.5e-22 109.0 150 41.3
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 4.6e-22 108.6 166 39.8
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 4.6e-22 108.6 166 39.8
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 4.6e-22 108.6 148 39.9
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 6.0e-22 108.2 150 41.3
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 6.0e-22 108.2 152 40.1
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 7.8e-22 107.8 155 37.4
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 7.8e-22 107.8 133 45.1
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 1.3e-21 107.1 150 41.3
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 1.7e-21 106.7 148 39.2
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 2.3e-21 106.3 152 42.1
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 2.3e-21 106.3 149 42.3
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 3.0e-21 105.9 162 42.0
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 3.9e-21 105.5 153 41.8
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 5.1e-21 105.1 150 42.0
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 6.6e-21 104.8 152 39.5
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 6.6e-21 104.8 125 44.0
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 1.1e-20 104.0 149 39.6
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 1.5e-20 103.6 160 39.4
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 3.3e-20 102.4 150 36.7
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 4.3e-20 102.1 154 38.3
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 5.6e-20 101.7 155 38.1
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 1.6e-19 100.1 150 40.0
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 1.6e-19 100.1 147 40.1
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 2.1e-19 99.8 151 39.1
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 2.8e-19 99.4 147 38.8
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 3.6e-19 99.0 138 43.5
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 4.7e-19 98.6 89 56.2
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 6.2e-19 98.2 153 37.9
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 6.2e-19 98.2 157 36.9
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 6.2e-19 98.2 162 34.6
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 3.1e-18 95.9 119 47.1
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 8.9e-18 94.4 150 36.7
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 1.2e-17 94.0 149 36.2
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 3.4e-17 92.4 126 42.9
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 3.4e-17 92.4 150 36.7
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 2.2e-16 89.7 162 35.2
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 2.9e-16 89.4 154 35.1
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 3.8e-16 89.0 173 34.7
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 2.1e-14 83.2 140 35.0
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 1.0e-13 80.9 159 33.3
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 1.1e-12 77.4 143 33.6
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 2.5e-12 76.3 177 30.5
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.2e-11 73.9 142 35.9
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 5.2e-10 68.6 102 37.3
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 6.9e-10 68.2 95 43.2
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 2.2e-08 63.2 74 41.9


User provided reference genes

Program Settings