Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G41610 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 1.8e-84 315.8 159 100.0
AL7G10400 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 4.5e-83 311.2 159 98.7
AL8G23230 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 1.0e-79 300.1 159 95.0
AL5G17660 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 1.3e-77 293.1 159 93.1
AL3G42160 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 3.7e-77 291.6 156 93.6
AL1G32470 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 2.4e-76 288.9 150 96.7
AT1G19740 Arabidopsis thaliana HOM05D004346 ORTHO05D005153 2.4e-76 288.9 150 96.7
Carub.0001s1929 Capsella rubella HOM05D004346 ORTHO05D005153 2.4e-76 288.9 150 96.7
Sp1g17580 Schrenkiella parvula HOM05D004346 ORTHO05D005153 2.4e-76 288.9 150 96.7
Thhalv10008437m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 1.6e-75 286.2 150 95.3
CARHR020270 Cardamine hirsuta HOM05D004346 ORTHO05D005153 2.0e-75 285.8 150 94.7
A06p15850 Brassica napus HOM05D004346 ORTHO05D005153 6.5e-74 280.8 150 92.7
BraA06t24697Z Brassica rapa HOM05D004346 ORTHO05D005153 6.5e-74 280.8 150 92.7
BolC5t30525H Brassica oleracea HOM05D004346 ORTHO05D005153 2.1e-72 275.8 151 92.1
C05p18170 Brassica napus HOM05D004346 ORTHO05D005153 6.1e-72 274.2 151 91.4
Aa31LG4G5700 Aethionema arabicum HOM05D004346 ORTHO05D005153 1.2e-70 270.0 150 89.3
THA.LOC104813810 Tarenaya hassleriana HOM05D004346 ORTHO05D005153 1.7e-69 266.2 150 86.7
CARHR068870 Cardamine hirsuta HOM05D004346 ORTHO05D005153 6.3e-69 264.2 150 86.7
AT1G75460 Arabidopsis thaliana HOM05D004346 ORTHO05D005153 1.4e-68 263.1 150 86.0
A02p19950 Brassica napus HOM05D004346 ORTHO05D005153 2.4e-68 262.3 150 86.7
BraA02t07032Z Brassica rapa HOM05D004346 ORTHO05D005153 2.4e-68 262.3 150 86.7
BcaB05g24908 Brassica carinata HOM05D004346 ORTHO05D005153 3.1e-68 261.9 150 86.7
C02p32610 Brassica napus HOM05D004346 ORTHO05D005153 3.1e-68 261.9 150 86.0
Carub.0002s2234 Capsella rubella HOM05D004346 ORTHO05D005153 7.0e-68 260.8 150 84.7
AL2G35430 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 9.1e-68 260.4 150 85.3
BolC2t09292H Brassica oleracea HOM05D004346 ORTHO05D005153 9.1e-68 260.4 150 86.0
Sp5g30610 Schrenkiella parvula HOM05D004346 ORTHO05D005153 9.1e-68 260.4 150 86.0
THA.LOC104809066 Tarenaya hassleriana HOM05D004346 ORTHO05D005153 9.1e-68 260.4 150 85.3
Thhalv10019638m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 1.6e-67 259.6 150 85.3
BcaC03g15576 Brassica carinata HOM05D004346 ORTHO05D005153 2.0e-67 259.2 150 85.3
BcaB07g31988 Brassica carinata HOM05D004346 ORTHO05D005153 5.9e-67 257.7 145 90.3
TWI56G1281 Tripterygium wilfordii HOM05D004346 ORTHO05D005153 5.5e-65 251.1 150 82.7
AL7G11380 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 1.4e-63 246.5 159 81.8
Thecc.08G035100 Theobroma cacao HOM05D004346 ORTHO05D005153 2.3e-63 245.7 150 80.0
COL.COLO4_26227 Corchorus olitorius HOM05D004346 ORTHO05D005153 3.0e-63 245.4 150 80.7
Duzib093G0381 Durio zibethinus HOM05D004346 ORTHO05D005153 3.0e-63 245.4 150 80.7
Duzib116G0866 Durio zibethinus HOM05D004346 ORTHO05D005153 4.0e-63 245.0 150 80.0
CiPaw.07G155800 Carya illinoinensis HOM05D004346 ORTHO05D005153 6.8e-63 244.2 152 80.9
Manes.18G022200 Manihot esculenta HOM05D004346 ORTHO05D005153 8.8e-63 243.8 150 79.3
Potri.002G029900 Populus trichocarpa HOM05D004346 ORTHO05D005153 8.8e-63 243.8 148 80.4
Atru.chr13.385 Acer truncatum HOM05D004346 ORTHO05D005153 1.2e-62 243.4 150 80.0
Cpa.g.sc698.2 Carica papaya HOM05D004346 ORTHO05D005153 1.2e-62 243.4 150 80.7
TWI36G0841 Tripterygium wilfordii HOM05D004346 ORTHO05D005153 2.0e-62 242.7 150 78.7
ClCG05G018660 Citrullus lanatus HOM05D004346 ORTHO05D005153 3.4e-62 241.9 152 80.3
MELO3C003788.2 Cucumis melo HOM05D004346 ORTHO05D005153 3.4e-62 241.9 152 80.3
Ciclev10002101m.g Citrus clementina HOM05D004346 ORTHO05D005153 5.7e-62 241.1 150 80.0
Sabra02G0023800 Salix brachista HOM05D004346 ORTHO05D005153 5.7e-62 241.1 148 79.1
Thhalv10027193m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 1.3e-61 240.0 135 85.9
QL02p010362 Quercus lobata HOM05D004346 ORTHO05D005153 1.3e-61 240.0 152 79.6
RcHm_v2.0_Chr6g0301881 Rosa chinensis HOM05D004346 ORTHO05D005153 1.3e-61 240.0 152 80.3
CANSAT25G3810 Cannabis sativa HOM05D004346 ORTHO05D005153 2.2e-61 239.2 150 80.0
Cfa013888 Carpinus fangiana HOM05D004346 ORTHO05D005153 2.2e-61 239.2 152 79.6
Haze_22565 Corylus avellana HOM05D004346 ORTHO05D005153 2.2e-61 239.2 152 79.6
FvH4_2g39180 Fragaria vesca HOM05D004346 ORTHO05D005153 2.2e-61 239.2 152 80.3
MD15G1020800 Malus domestica HOM05D004346 ORTHO05D005153 2.2e-61 239.2 152 78.3
FAN15G2637 Fragaria x ananassa HOM05D004346 ORTHO05D005153 2.8e-61 238.8 152 79.6
Nn1g05970 Nelumbo nucifera HOM05D004346 ORTHO05D005153 3.7e-61 238.4 150 78.7
CsaV3_3G045520 Cucumis sativus L. HOM05D004346 ORTHO05D005153 4.9e-61 238.0 152 78.9
FAN27G0767 Fragaria x ananassa HOM05D004346 ORTHO05D005153 6.3e-61 237.7 152 79.6
Prupe.1G372600 Prunus persica HOM05D004346 ORTHO05D005153 6.3e-61 237.7 152 78.9
CSS0003618 Camellia sinensis var. sinensis HOM05D004346 ORTHO05D005153 8.3e-61 237.3 151 78.8
Cc10_g02310 Coffea canephora HOM05D004346 ORTHO05D005153 8.3e-61 237.3 150 78.7
MBI01_g12679_MAGBIO Magnolia biondii HOM05D004346 ORTHO05D005153 8.3e-61 237.3 148 78.4
Potri.005G232800 Populus trichocarpa HOM05D004346 ORTHO05D005153 8.3e-61 237.3 148 79.1
Sed0026661 Sechium edule HOM05D004346 ORTHO05D009095 1.1e-60 236.9 152 78.9
MD08G1023400 Malus domestica HOM05D004346 ORTHO05D005153 1.4e-60 236.5 152 78.3
FAN20G0669 Fragaria x ananassa HOM05D004346 ORTHO05D005153 2.4e-60 235.7 152 78.3
Nn5g29149 Nelumbo nucifera HOM05D004346 ORTHO05D005153 2.4e-60 235.7 150 78.0
MSTRG.24272 Avicennia marina HOM05D004346 ORTHO05D005153 3.1e-60 235.3 149 79.2
Dinv39468 Davidia involucrata HOM05D004346 ORTHO05D005153 3.1e-60 235.3 150 78.7
Duzib041G0460 Durio zibethinus HOM05D004346 ORTHO05D005153 3.1e-60 235.3 150 77.3
Gohir.A05G189500 Gossypium hirsutum HOM05D004346 ORTHO05D005153 3.1e-60 235.3 148 77.0
Gohir.D05G192800 Gossypium hirsutum HOM05D004346 ORTHO05D005153 3.1e-60 235.3 148 77.0
Gorai.009G198000 Gossypium raimondii HOM05D004346 ORTHO05D005153 3.1e-60 235.3 148 77.0
Sed0026579 Sechium edule HOM05D004346 ORTHO05D005153 3.1e-60 235.3 152 78.9
Thhalv10029286m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 4.1e-60 235.0 135 85.2
Dinv31796 Davidia involucrata HOM05D004346 ORTHO05D005153 9.1e-60 233.8 150 77.3
Oeu030608.1 Olea europaea HOM05D004346 ORTHO05D005153 1.2e-59 233.4 152 75.7
Aqoxy6G01229 Aquilegia oxysepala HOM05D004346 ORTHO05D005153 1.6e-59 233.0 150 75.3
DCAR_009955 Daucus carota HOM05D004346 ORTHO05D005153 1.6e-59 233.0 149 77.2
Migut.N03118 Erythranthe guttata HOM05D004346 ORTHO05D005153 2.0e-59 232.6 150 78.7
Eucgr.F01853 Eucalyptus grandis HOM05D004346 ORTHO05D005153 2.0e-59 232.6 150 76.7
Lsat_1_v5_gn_5_25761 Lactuca sativa HOM05D004346 ORTHO05D005153 3.5e-59 231.9 150 77.3
PSO541G5233 Papaver somniferum HOM05D004346 ORTHO05D005153 3.5e-59 231.9 150 76.0
PSO675G8115 Papaver somniferum HOM05D004346 ORTHO05D005153 3.5e-59 231.9 150 76.0
Sopen04g034450 Solanum pennellii HOM05D004346 ORTHO05D005153 4.5e-59 231.5 150 76.7
PGSC0003DMG400003704 Solanum tuberosum HOM05D004346 ORTHO05D005153 4.5e-59 231.5 150 76.7
unitig_21.g20157 Utricularia gibba HOM05D004346 ORTHO05D005153 5.9e-59 231.1 149 76.5
Eucgr.F01605 Eucalyptus grandis HOM05D004346 ORTHO05D005153 7.7e-59 230.7 152 76.3
TAR068G0006 Trochodendron aralioides HOM05D004346 ORTHO05D005153 7.7e-59 230.7 151 76.8
CiPaw.08G061400 Carya illinoinensis HOM05D004346 ORTHO05D005153 1.3e-58 229.9 152 77.0
Nitab4.5_0001861g0130 Nicotiana tabacum HOM05D004346 ORTHO05D005153 1.3e-58 229.9 151 76.2
Oeu030408.1 Olea europaea HOM05D004346 ORTHO05D005153 1.3e-58 229.9 151 75.5
SalBow8G0366 Salvia bowleyana HOM05D004346 ORTHO05D005153 1.3e-58 229.9 150 77.3
SalBow8G2486 Salvia bowleyana HOM05D004346 ORTHO05D005153 1.3e-58 229.9 150 77.3
VMungo1309G1438 Vigna mungo HOM05D004346 ORTHO05D005153 1.3e-58 229.9 152 76.3
Lalb_Chr23g0266421 Lupinus albus HOM05D004346 ORTHO05D005153 1.7e-58 229.6 160 74.4
Lj4C32T10 Lonicera japonica HOM05D004346 ORTHO05D005153 2.3e-58 229.2 150 76.0
Actinidia22506 Actinidia chinensis HOM05D004346 ORTHO05D005153 2.9e-58 228.8 150 76.0
TAR376G0822 Trochodendron aralioides HOM05D004346 ORTHO05D005153 2.9e-58 228.8 150 74.0
CAN.G851.33 Capsicum annuum HOM05D004346 ORTHO05D005153 3.8e-58 228.4 150 75.3
Gorai.002G126100 Gossypium raimondii HOM05D004346 ORTHO05D005153 3.8e-58 228.4 150 74.7
Lj1g0013800 Lotus japonicus HOM05D004346 ORTHO05D005153 5.0e-58 228.0 152 75.7
Nitab4.5_0002156g0110 Nicotiana tabacum HOM05D004346 ORTHO05D005153 8.6e-58 227.3 150 75.3
Gohir.D01G101600 Gossypium hirsutum HOM05D004346 ORTHO05D005153 1.1e-57 226.9 149 74.5
Gohir.A06G006700 Gossypium hirsutum HOM05D004346 ORTHO05D005153 1.5e-57 226.5 151 76.2
Phvul.009G012900 Phaseolus vulgaris HOM05D004346 ORTHO05D005153 1.9e-57 226.1 152 75.7
arahy.Tifrunner.gnm1.ann1.FS02K0 Arachis hypogaea HOM05D004346 ORTHO05D005153 2.5e-57 225.7 153 74.5
ECA232G0130 Erigeron canadensis HOM05D004346 ORTHO05D005153 2.5e-57 225.7 153 73.2
Gorai.010G007200 Gossypium raimondii HOM05D004346 ORTHO05D005153 2.5e-57 225.7 151 75.5
ATR0680G160 Amborella trichopoda HOM05D004346 ORTHO05D005153 4.2e-57 224.9 150 74.0
Glyma.04G028400 Glycine max HOM05D004346 ORTHO05D005153 5.5e-57 224.6 152 74.3
Gohir.D06G002460 Gossypium hirsutum HOM05D004346 ORTHO05D005153 1.2e-56 223.4 151 74.8
Glyma.06G028500 Glycine max HOM05D004346 ORTHO05D005153 1.6e-56 223.0 152 74.3
SGA_v2.0_scaffold326G48739 Striga asiatica HOM05D004346 ORTHO05D005153 1.6e-56 223.0 150 72.7
Ca_02070_v3 Cicer arietinum L. HOM05D004346 ORTHO05D005153 2.1e-56 222.6 152 73.7
TPR.G12390 Trifolium pratense HOM05D004346 ORTHO05D005153 2.1e-56 222.6 152 74.3
Mapoly0123s0028 Marchantia polymorpha HOM05D004346 ORTHO05D005153 2.8e-56 222.2 150 76.0
Medtr3g112420 Medicago truncatula HOM05D004346 ORTHO05D005153 3.6e-56 221.9 152 73.0
Psat0s471g0440 Pisum sativum HOM05D004346 ORTHO05D005153 1.0e-55 220.3 152 73.0
Phvul.001G010700 Phaseolus vulgaris HOM05D004346 ORTHO05D005153 5.2e-55 218.0 151 72.8
Ah.10g035530 Amaranthus hybridus HOM05D004346 ORTHO05D005153 6.8e-55 217.6 153 68.0
VMungo0647G1706 Vigna mungo HOM05D004346 ORTHO05D005153 1.2e-54 216.9 151 72.2
AUR62034542 Chenopodium quinoa HOM05D004346 ORTHO05D005153 1.5e-54 216.5 154 70.1
Pp3c2_28030 Physcomitrium patens HOM05D004346 ORTHO05D005153 3.4e-54 215.3 150 73.3
Rhsim06G0027900 Rhododendron simsii HOM05D004346 ORTHO05D005153 5.7e-54 214.5 150 72.0
unitig_22.g6787 Utricularia gibba HOM05D004346 ORTHO05D005153 9.8e-54 213.8 153 72.5
Glyma.14G070400 Glycine max HOM05D004346 ORTHO05D005153 1.3e-53 213.4 154 71.4
Sc15g0007210 Simmondsia chinensis HOM05D004346 ORTHO05D005153 2.2e-53 212.6 151 70.9
Os07g0509700 Oryza sativa ssp. japonica HOM05D004346 ORTHO05D005153 6.3e-53 211.1 155 66.5
CBR_g8224 Chara braunii HOM05D004346 ORTHO05D005153 1.8e-52 209.5 150 69.3
Zm00001eb105790 Zea mays HOM05D004346 ORTHO05D005153 2.4e-52 209.1 155 67.7
Zm00001eb322430 Zea mays HOM05D004346 ORTHO05D005153 5.4e-52 208.0 155 67.7
HPP92_007934 Vanilla planifolia HOM05D004346 ORTHO05D005153 7.0e-52 207.6 159 67.9
SMO340G0026 Selaginella moellendorffii HOM05D004346 ORTHO05D005153 9.2e-52 207.2 158 67.7
SEGI_19140 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 2.0e-51 206.1 151 68.9
SEGI_26379 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 7.8e-51 204.1 151 68.9
CDE03G0026 Ceratophyllum demersum HOM05D004346 ORTHO05D005153 1.9e-49 199.5 126 76.2
Nn5g30640 Nelumbo nucifera HOM05D004346 ORTHO05D005153 3.6e-48 195.3 127 74.0
Zm00001eb380450 Zea mays HOM05D004346 ORTHO05D005153 8.3e-45 184.1 139 66.2
CBR_g51048 Chara braunii HOM05D004346 ORTHO05D005153 3.2e-44 182.2 161 59.6
FAN03G3294 Fragaria x ananassa HOM05D004346 ORTHO05D005153 6.6e-42 174.5 116 75.0
FAN09G3639 Fragaria x ananassa HOM05D004346 ORTHO05D005153 8.6e-42 174.1 116 75.0
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 8.6e-42 174.1 116 75.0
LjContig00412g0021689 Lotus japonicus HOM05D004346 ORTHO05D005153 9.5e-41 170.6 119 71.4
Lj3g0013855 Lotus japonicus HOM05D004346 ORTHO05D005153 2.1e-40 169.5 119 71.4
FAN21G1121 Fragaria x ananassa HOM05D004346 ORTHO05D005153 5.8e-38 161.4 116 72.4
FAN17G2329 Fragaria x ananassa HOM05D004346 ORTHO05D005153 5.4e-36 154.8 102 76.5
Actinidia15370 Actinidia chinensis HOM05D004346 ORTHO05D005153 2.1e-35 152.9 142 62.0
Peaxi162Scf00189g00121 Petunia axillaris HOM05D004346 ORTHO05D005153 2.7e-35 152.5 101 77.2
AagrBONN_evm.TU.Sc2ySwM_117.454 Anthoceros agrestis HOM05D004346 ORTHO05D005153 1.5e-30 136.7 98 65.3
VMungo1383G2745 Vigna mungo HOM05D003359 ORTHO05D005153 1.3e-26 123.6 84 70.2
FAN07G0972 Fragaria x ananassa HOM05D002863 ORTHO05D005691 3.1e-23 112.5 75 77.3
Os03g0409100 Oryza sativa ssp. japonica HOM05D004346 ORTHO05D005153 3.9e-18 95.5 162 40.7
Solyc04g080870.1 Solanum lycopersicum HOM05D004346 ORTHO05D005153 6.6e-18 94.7 55 83.6
Zm00001eb019650 Zea mays HOM05D004346 ORTHO05D005153 3.3e-17 92.4 151 40.4
FAN13G0889 Fragaria x ananassa HOM05D004346 ORTHO05D005153 9.0e-15 84.3 50 78.0
Cre02.g141550 Chlamydomonas reinhardtii HOM05D004346 ORTHO05D005153 1.4e-12 77.0 160 37.5
Gohir.A01G113800 Gossypium hirsutum HOM05D004346 ORTHO05D005153 8.7e-10 67.8 52 65.4
PRCOL_00005671 Prasinoderma coloniale HOM05D004346 ORTHO05D005153 3.3e-09 65.9 146 30.1
CiPaw.11G047400 Carya illinoinensis HOM05D000041 ORTHO05D006140 1.3e-08 63.9 160 29.4
Pp3c15_14620 Physcomitrium patens HOM05D000041 ORTHO05D006140 2.8e-08 62.8 168 29.8
Medtr3g037230 Medicago truncatula HOM05D000041 ORTHO05D006140 8.1e-08 61.2 161 31.1


User provided reference genes

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