Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G41390 Arabidopsis lyrata HOM05D004379 ORTHO05D005186 1.6e-57 225.7 101 100.0
AT1G80133 Arabidopsis thaliana HOM05D004379 ORTHO05D005186 8.4e-51 203.4 101 91.1
CARHR074360 Cardamine hirsuta HOM05D004379 ORTHO05D005186 1.9e-42 175.6 104 76.0
Thhalv10019808m.g Eutrema salsugineum HOM05D004379 ORTHO05D005186 1.1e-37 159.8 103 72.8
Carub.0002s2738 Capsella rubella HOM05D004379 ORTHO05D005186 6.9e-37 157.1 102 69.6
A02p23810 Brassica napus HOM05D004379 ORTHO05D005186 2.6e-36 155.2 100 66.0
BraA02t07372Z Brassica rapa HOM05D004379 ORTHO05D005186 2.6e-36 155.2 100 66.0
BolC2t09767H Brassica oleracea HOM05D004379 ORTHO05D005186 6.5e-35 150.6 100 66.0
C02p37550 Brassica napus HOM05D004379 ORTHO05D005186 7.9e-33 143.7 100 63.0
BcaB05g25296 Brassica carinata HOM05D004379 ORTHO05D005186 1.7e-27 125.9 68 69.1
Sabra18G0111000 Salix brachista HOM05D001818 ORTHO05D001780 2.5e-10 68.9 97 36.1
Sed0018633 Sechium edule HOM05D004379 ORTHO05D005186 2.5e-10 68.9 92 37.0
Thecc.06G022000 Theobroma cacao HOM05D004379 ORTHO05D005186 3.2e-10 68.6 99 39.4
Prupe.3G085300 Prunus persica HOM05D004379 ORTHO05D005186 5.5e-10 67.8 100 38.0
Potri.018G130700 Populus trichocarpa HOM05D004379 ORTHO05D005186 7.2e-10 67.4 104 34.6
RcHm_v2.0_Chr2g0135761 Rosa chinensis HOM05D004379 ORTHO05D005186 1.2e-09 66.6 118 33.1
Sed0013123 Sechium edule HOM05D004379 ORTHO05D005186 1.2e-09 66.6 102 35.3
MBI04_g29349_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 1.6e-09 66.2 66 39.4
FAN02G0226 Fragaria x ananassa HOM05D004379 ORTHO05D005186 2.7e-09 65.5 118 33.1
FAN17G1709 Fragaria x ananassa HOM05D004379 ORTHO05D005186 2.7e-09 65.5 118 33.1
Manes.11G055900 Manihot esculenta HOM05D004379 ORTHO05D005186 2.7e-09 65.5 78 35.9
FvH4_6g29870 Fragaria vesca HOM05D004379 ORTHO05D005186 3.6e-09 65.1 117 32.5
PGR102G3274 Punica granatum HOM05D004379 ORTHO05D005186 3.6e-09 65.1 90 34.4
ClCG06G011240 Citrullus lanatus HOM05D004379 ORTHO05D005186 4.7e-09 64.7 75 40.0
Sed0015199 Sechium edule HOM05D004379 ORTHO05D005186 4.7e-09 64.7 97 30.9
MD17G1210000 Malus domestica HOM05D004379 ORTHO05D005186 6.1e-09 64.3 117 31.6
CsaV3_4G001570 Cucumis sativus L. HOM05D004379 ORTHO05D005186 8.0e-09 63.9 91 35.2
Duzib235G0719 Durio zibethinus HOM05D004379 ORTHO05D005186 8.0e-09 63.9 93 35.5
FAN14G0452 Fragaria x ananassa HOM05D004379 ORTHO05D005186 8.0e-09 63.9 117 32.5
Glyma.15G008000 Glycine max HOM05D004379 ORTHO05D005186 8.0e-09 63.9 108 30.6
CSS0000383 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 1.0e-08 63.5 71 36.6
MBI04_g47848_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 1.0e-08 63.5 66 37.9
RcHm_v2.0_Chr2g0088241 Rosa chinensis HOM05D004379 ORTHO05D005186 1.0e-08 63.5 79 35.4
TAR383G0091 Trochodendron aralioides HOM05D004379 ORTHO05D005186 1.0e-08 63.5 112 33.9
Duzib192G0219 Durio zibethinus HOM05D004379 ORTHO05D005186 1.4e-08 63.2 64 43.8
Glyma.01G242700 Glycine max HOM05D002122 ORTHO05D002205 1.4e-08 63.2 64 37.5
QL05p029537 Quercus lobata HOM05D004379 ORTHO05D005186 1.4e-08 63.2 78 33.3
unitig_61.g26235 Utricularia gibba HOM05D004379 ORTHO05D005186 1.4e-08 63.2 91 35.2
FAN05G0070 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.8e-08 62.8 118 32.2
Medtr4g010300 Medicago truncatula HOM05D004379 ORTHO05D005186 1.8e-08 62.8 108 29.6
Nn2g12051 Nelumbo nucifera HOM05D004379 ORTHO05D005186 1.8e-08 62.8 110 32.7
CANSAT56G1089 Cannabis sativa HOM05D004379 ORTHO05D005186 2.3e-08 62.4 98 30.6
ClCG07G012630 Citrullus lanatus HOM05D004379 ORTHO05D005186 2.3e-08 62.4 111 32.4
Ciclev10027032m.g Citrus clementina HOM05D004379 ORTHO05D005186 2.3e-08 62.4 107 30.8
Glyma.02G235000 Glycine max HOM05D002122 ORTHO05D002205 2.3e-08 62.4 93 31.2
MD15G1171700 Malus domestica HOM05D004379 ORTHO05D005186 2.3e-08 62.4 106 31.1
Medtr4g114660 Medicago truncatula HOM05D004379 ORTHO05D005186 2.3e-08 62.4 118 32.2
Psat7g256400 Pisum sativum HOM05D004379 ORTHO05D005186 2.3e-08 62.4 102 33.3
Prupe.7G244400 Prunus persica HOM05D004379 ORTHO05D005186 2.3e-08 62.4 111 30.6
VMungo0331G0688 Vigna mungo HOM05D004379 ORTHO05D005186 2.3e-08 62.4 105 32.4
CiPaw.04G172300 Carya illinoinensis HOM05D004379 ORTHO05D005186 3.0e-08 62.0 94 38.3
Nn8g39475 Nelumbo nucifera HOM05D004379 ORTHO05D005186 3.0e-08 62.0 101 31.7
Prupe.7G036700 Prunus persica HOM05D004379 ORTHO05D005186 3.0e-08 62.0 115 35.7
Aqoxy7G03687 Aquilegia oxysepala HOM05D004379 ORTHO05D005186 4.0e-08 61.6 110 34.5
AUR62016345 Chenopodium quinoa HOM05D004379 ORTHO05D005186 4.0e-08 61.6 72 37.5
ECA232G5025 Erigeron canadensis HOM05D000315 ORTHO05D001379 4.0e-08 61.6 111 34.2
Sabra06G0050900 Salix brachista HOM05D004379 ORTHO05D005186 4.0e-08 61.6 68 38.2
Cfa003389 Carpinus fangiana HOM05D004379 ORTHO05D005186 5.2e-08 61.2 98 34.7
Haze_25560 Corylus avellana HOM05D004379 ORTHO05D005186 5.2e-08 61.2 98 34.7
SalBow2G2996 Salvia bowleyana HOM05D004379 ORTHO05D005186 5.2e-08 61.2 110 28.2
TPR.G26481 Trifolium pratense HOM05D004379 ORTHO05D005186 5.2e-08 61.2 115 32.2
CSS0024700 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 6.7e-08 60.8 73 32.9
CiPaw.03G245200 Carya illinoinensis HOM05D004379 ORTHO05D005186 6.7e-08 60.8 97 35.1
MBI01_g38638_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 6.7e-08 60.8 65 36.9
Phvul.005G177700 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 6.7e-08 60.8 103 29.1
Atru.chr1.2986 Acer truncatum HOM05D004379 ORTHO05D005186 8.8e-08 60.5 96 35.4
arahy.Tifrunner.gnm1.ann1.131LTR Arachis hypogaea HOM05D004379 ORTHO05D005186 8.8e-08 60.5 117 31.6
FAN28G1543 Fragaria x ananassa HOM05D004379 ORTHO05D005186 8.8e-08 60.5 105 31.4
TPR.G38692 Trifolium pratense HOM05D004379 ORTHO05D005186 8.8e-08 60.5 97 30.9
Cpa.g.sc10.259 Carica papaya HOM05D004379 ORTHO05D005186 1.1e-07 60.1 74 35.1
FvH4_1g03100 Fragaria vesca HOM05D004379 ORTHO05D005186 1.1e-07 60.1 105 31.4
FAN23G1202 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.1e-07 60.1 105 31.4
FAN23G2903 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.1e-07 60.1 105 31.4
FAN26G3437 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.1e-07 60.1 105 31.4
Gohir.A10G074000 Gossypium hirsutum HOM05D004379 ORTHO05D005186 1.1e-07 60.1 94 34.0
Gohir.D10G075800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 1.1e-07 60.1 91 33.0
Gorai.011G083500 Gossypium raimondii HOM05D004379 ORTHO05D005186 1.1e-07 60.1 91 33.0
Phvul.002G051900 Phaseolus vulgaris HOM05D002122 ORTHO05D002205 1.1e-07 60.1 64 37.5
Sed0025536 Sechium edule HOM05D004379 ORTHO05D005186 1.1e-07 60.1 73 34.2
VMungo1215G2893 Vigna mungo HOM05D002122 ORTHO05D002205 1.1e-07 60.1 64 37.5
MSTRG.11136 Avicennia marina HOM05D004379 ORTHO05D005186 1.5e-07 59.7 99 34.3
Cfa020793 Carpinus fangiana HOM05D002122 ORTHO05D002205 1.5e-07 59.7 59 39.0
FAN09G2661 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.5e-07 59.7 117 30.8
HanXRQChr06g0169201 Helianthus annuus HOM05D004379 ORTHO05D005186 1.5e-07 59.7 92 31.5
Lalb_Chr22g0350861 Lupinus albus HOM05D004379 ORTHO05D005186 1.5e-07 59.7 112 31.2
QL02p088712 Quercus lobata HOM05D004379 ORTHO05D005186 1.5e-07 59.7 95 33.7
arahy.Tifrunner.gnm1.ann1.4DH38B Arachis hypogaea HOM05D004379 ORTHO05D005186 2.0e-07 59.3 103 33.0
arahy.Tifrunner.gnm1.ann1.4K2N5B Arachis hypogaea HOM05D004379 ORTHO05D005186 2.0e-07 59.3 103 33.0
CsaV3_1G030270 Cucumis sativus L. HOM05D004379 ORTHO05D005186 2.0e-07 59.3 77 36.4
Migut.I00774 Erythranthe guttata HOM05D004379 ORTHO05D005186 2.0e-07 59.3 76 31.6
Hma1.2p1_0042F.1_g025560 Hydrangea macrophylla HOM05D004379 ORTHO05D005186 2.0e-07 59.3 69 36.2
PSO135G0759 Papaver somniferum HOM05D004379 ORTHO05D005186 2.0e-07 59.3 95 33.7
COL.COLO4_12954 Corchorus olitorius HOM05D004379 ORTHO05D005186 2.6e-07 58.9 70 38.6
Glyma.17G113800 Glycine max HOM05D004379 ORTHO05D005186 2.6e-07 58.9 111 31.5
Gohir.D05G016800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 2.6e-07 58.9 92 32.6
Gorai.009G017000 Gossypium raimondii HOM05D004379 ORTHO05D005186 2.6e-07 58.9 92 32.6
Lalb_Chr07g0179021 Lupinus albus HOM05D004379 ORTHO05D005186 2.6e-07 58.9 95 34.7
Nitab4.5_0007793g0030 Nicotiana tabacum HOM05D004379 ORTHO05D005186 2.6e-07 58.9 68 38.2
Rhsim12G0191800 Rhododendron simsii HOM05D004379 ORTHO05D005186 2.6e-07 58.9 107 29.0
SEGI_35416 Sequoiadendron giganteum HOM05D004379 ORTHO05D005186 2.6e-07 58.9 60 40.0
Glyma.07G030700 Glycine max HOM05D004379 ORTHO05D005186 3.3e-07 58.5 69 36.2
Gohir.A05G015700 Gossypium hirsutum HOM05D004379 ORTHO05D005186 3.3e-07 58.5 91 31.9
Lj3g0013777 Lotus japonicus HOM05D004379 ORTHO05D005186 3.3e-07 58.5 99 35.4
Manes.14G121900 Manihot esculenta HOM05D004379 ORTHO05D005186 3.3e-07 58.5 64 37.5
Atru.chr7.1137 Acer truncatum HOM05D004379 ORTHO05D005186 4.4e-07 58.2 61 41.0
arahy.Tifrunner.gnm1.ann1.WW0PRH Arachis hypogaea HOM05D004379 ORTHO05D005186 4.4e-07 58.2 65 40.0
CiPaw.05G017400 Carya illinoinensis HOM05D002122 ORTHO05D002205 4.4e-07 58.2 70 40.0
MELO3C017882.2 Cucumis melo HOM05D004379 ORTHO05D005186 4.4e-07 58.2 87 34.5
Thecc.09G128000 Theobroma cacao HOM05D004379 ORTHO05D005186 4.4e-07 58.2 71 33.8
arahy.Tifrunner.gnm1.ann1.YHK00Y Arachis hypogaea HOM05D004379 ORTHO05D005186 7.5e-07 57.4 79 32.9
Cc04_g04300 Coffea canephora HOM05D004379 ORTHO05D005186 7.5e-07 57.4 67 38.8
Phvul.010G155400 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 7.5e-07 57.4 93 34.4
Psat5g302160 Pisum sativum HOM05D004379 ORTHO05D005186 7.5e-07 57.4 71 32.4
MD02G1030200 Malus domestica HOM05D004379 ORTHO05D005186 1.3e-06 56.6 91 34.1
TWI12G0794 Tripterygium wilfordii HOM05D004379 ORTHO05D005186 1.3e-06 56.6 80 30.0
Duzib168G0259 Durio zibethinus HOM05D004379 ORTHO05D005186 1.7e-06 56.2 91 30.8
Peaxi162Scf00785g00321 Petunia axillaris HOM05D004379 ORTHO05D005186 1.7e-06 56.2 63 36.5
Glyma.14G202900 Glycine max HOM05D002122 ORTHO05D002205 2.2e-06 55.8 54 37.0
Peaxi162Scf00046g00719 Petunia axillaris HOM05D004379 ORTHO05D005186 2.2e-06 55.8 96 29.2
Solyc03g116650.3 Solanum lycopersicum HOM05D004379 ORTHO05D005186 2.2e-06 55.8 94 33.0
Duzib187G0465 Durio zibethinus HOM05D004379 ORTHO05D005186 2.8e-06 55.5 75 30.7
FvH4_2g04310 Fragaria vesca HOM05D002122 ORTHO05D002205 2.8e-06 55.5 54 38.9
Lsat_1_v5_gn_5_132021 Lactuca sativa HOM05D004379 ORTHO05D005186 2.8e-06 55.5 93 32.3
Medtr2g103780 Medicago truncatula HOM05D004379 ORTHO05D005186 2.8e-06 55.5 74 31.1
Nitab4.5_0000321g0260 Nicotiana tabacum HOM05D002122 ORTHO05D002205 2.8e-06 55.5 63 38.1
RcHm_v2.0_Chr6g0253751 Rosa chinensis HOM05D002122 ORTHO05D002205 2.8e-06 55.5 54 38.9
Hund06564 Selenicereus undatus HOM05D004379 ORTHO05D005186 2.8e-06 55.5 118 26.3
VMungo1215G1478 Vigna mungo HOM05D004379 ORTHO05D005186 2.8e-06 55.5 73 38.4
CiPaw.02G156500 Carya illinoinensis HOM05D004379 ORTHO05D005186 3.7e-06 55.1 95 33.7
Eucgr.C01743 Eucalyptus grandis HOM05D004379 ORTHO05D005186 3.7e-06 55.1 71 31.0
Glyma.08G212100 Glycine max HOM05D004379 ORTHO05D005186 3.7e-06 55.1 67 35.8
HanXRQChr12g0361431 Helianthus annuus HOM05D004379 ORTHO05D005186 3.7e-06 55.1 69 36.2
Lalb_Chr13g0301791 Lupinus albus HOM05D004379 ORTHO05D005186 3.7e-06 55.1 69 40.6
SalBow6G6427 Salvia bowleyana HOM05D004379 ORTHO05D005186 3.7e-06 55.1 61 36.1
PGSC0003DMG400030926 Solanum tuberosum HOM05D004379 ORTHO05D005186 3.7e-06 55.1 97 28.9
CsaV3_7G032450 Cucumis sativus L. HOM05D004379 ORTHO05D005186 4.8e-06 54.7 70 32.9
Lalb_Chr04g0263751 Lupinus albus HOM05D002122 ORTHO05D002205 4.8e-06 54.7 54 38.9
MSTRG.9427 Avicennia marina HOM05D004379 ORTHO05D005186 6.3e-06 54.3 107 29.9
COL.COLO4_32519 Corchorus olitorius HOM05D002122 ORTHO05D002205 6.3e-06 54.3 54 42.6
Eucgr.F03867 Eucalyptus grandis HOM05D004379 ORTHO05D005186 6.3e-06 54.3 121 28.1
Atru.chr4.2373 Acer truncatum HOM05D002122 ORTHO05D002205 8.2e-06 53.9 81 34.6
Atru.chr4.2397 Acer truncatum HOM05D002122 ORTHO05D002205 8.2e-06 53.9 81 34.6
C01p28490 Brassica napus HOM05D002122 ORTHO05D002205 8.2e-06 53.9 70 38.6
DCAR_014889 Daucus carota HOM05D004379 ORTHO05D005186 8.2e-06 53.9 73 34.2
FAN24G2314 Fragaria x ananassa HOM05D002122 ORTHO05D002205 8.2e-06 53.9 53 37.7


User provided reference genes

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