Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 4.1e-50 201.1 100 100.0
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 2.4e-42 175.3 103 87.4
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 3.4e-36 154.8 108 76.9
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 3.4e-36 154.8 102 81.4
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 1.3e-35 152.9 105 77.1
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 1.7e-35 152.5 105 80.0
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 1.9e-34 149.1 105 74.3
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 3.2e-34 148.3 105 75.2
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 3.2e-34 148.3 103 75.7
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 3.2e-34 148.3 101 78.2
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 4.2e-34 147.9 103 75.7
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 1.5e-31 139.4 103 73.8
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 1.9e-31 139.0 102 72.5
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 1.6e-30 136.0 106 72.6
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 1.7e-27 125.9 102 67.6
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 6.0e-25 117.5 96 65.6
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 1.1e-21 106.7 124 48.4
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 1.4e-21 106.3 60 81.7
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 1.8e-21 105.9 123 48.0
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 2.4e-21 105.5 116 51.7
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 3.1e-21 105.1 111 52.3
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 4.0e-21 104.8 90 58.9
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 9.0e-21 103.6 78 74.4
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 9.0e-21 103.6 123 49.6
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 3.4e-20 101.7 114 51.8
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 4.5e-20 101.3 115 50.4
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 7.6e-20 100.5 109 50.5
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 1.3e-19 99.8 108 52.8
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 1.3e-19 99.8 110 49.1
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.3e-19 99.8 110 50.9
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 1.7e-19 99.4 114 49.1
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 1.7e-19 99.4 109 50.5
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.7e-19 99.4 111 50.5
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 2.9e-19 98.6 109 49.5
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 2.9e-19 98.6 123 44.7
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 3.8e-19 98.2 115 47.0
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 4.9e-19 97.8 124 44.4
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 4.9e-19 97.8 111 50.5
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 4.9e-19 97.8 114 48.2
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 4.9e-19 97.8 88 58.0
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 8.4e-19 97.1 121 44.6
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 1.1e-18 96.7 127 44.1
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 1.1e-18 96.7 124 45.2
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 1.4e-18 96.3 125 45.6
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 1.4e-18 96.3 123 47.2
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.9e-18 95.9 109 49.5
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 1.9e-18 95.9 123 48.8
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.4e-18 95.5 109 49.5
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.4e-18 95.5 109 49.5
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.4e-18 95.5 109 49.5
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.4e-18 95.5 109 49.5
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 2.4e-18 95.5 114 47.4
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 3.2e-18 95.1 106 48.1
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 4.2e-18 94.7 97 53.6
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.4e-18 94.4 109 49.5
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 7.1e-18 94.0 123 45.5
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 7.1e-18 94.0 109 48.6
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 7.1e-18 94.0 109 48.6
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 9.3e-18 93.6 117 47.0
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 9.3e-18 93.6 106 49.1
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 1.2e-17 93.2 112 50.9
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 1.2e-17 93.2 101 48.5
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.6e-17 92.8 109 48.6
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 1.6e-17 92.8 107 49.5
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 1.6e-17 92.8 121 46.3
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 1.6e-17 92.8 112 49.1
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 2.1e-17 92.4 108 47.2
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 2.1e-17 92.4 108 47.2
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 2.1e-17 92.4 121 46.3
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.1e-17 92.4 109 48.6
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 2.1e-17 92.4 124 42.7
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 2.1e-17 92.4 114 45.6
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 2.1e-17 92.4 109 47.7
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 2.7e-17 92.0 110 44.5
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 3.5e-17 91.7 108 46.3
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 3.5e-17 91.7 110 47.3
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 3.5e-17 91.7 118 44.1
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 4.6e-17 91.3 111 45.9
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 4.6e-17 91.3 109 46.8
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 6.0e-17 90.9 131 44.3
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 7.9e-17 90.5 110 44.5
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 7.9e-17 90.5 121 47.9
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 7.9e-17 90.5 121 43.0
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 7.9e-17 90.5 109 46.8
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 1.0e-16 90.1 109 46.8
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 1.3e-16 89.7 113 46.9
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.3e-16 89.7 109 46.8
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 1.8e-16 89.4 109 46.8
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 2.3e-16 89.0 119 42.0
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 2.3e-16 89.0 107 47.7
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.0e-16 88.6 116 46.6
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.9e-16 88.2 109 48.6
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 5.1e-16 87.8 107 43.9
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 6.7e-16 87.4 63 65.1
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 6.7e-16 87.4 109 48.6
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 6.7e-16 87.4 129 43.4
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 8.7e-16 87.0 60 65.0
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.5e-15 85.5 109 47.7
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 4.3e-15 84.7 110 45.5
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 7.4e-15 84.0 109 46.8
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 9.6e-15 83.6 61 62.3
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 1.3e-14 83.2 72 69.4
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 1.6e-14 82.8 72 69.4
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 3.7e-14 81.6 100 48.0
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 8.1e-14 80.5 99 44.4
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.1e-13 80.1 135 40.7
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 1.1e-13 80.1 58 58.6
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 1.8e-13 79.3 96 46.9
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.4e-13 79.0 60 63.3
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 6.9e-13 77.4 114 40.4
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 6.9e-13 77.4 61 55.7
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 9.0e-13 77.0 110 42.7
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 9.0e-13 77.0 60 53.3
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 5.8e-12 74.3 60 56.7
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 7.6e-12 73.9 106 44.3
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 1.7e-11 72.8 82 53.7
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 1.7e-11 72.8 98 45.9
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 8.4e-11 70.5 73 47.9
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 1.9e-10 69.3 88 45.5
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 7.9e-09 63.9 45 66.7
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 1.8e-08 62.8 96 44.8
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 3.9e-08 61.6 45 64.4
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 6.7e-08 60.8 48 56.2
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 6.7e-08 60.8 44 63.6
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 1.1e-07 60.1 94 43.6
SMO293G0007 Selaginella moellendorffii HOM05D005439 ORTHO05D006793 1.5e-07 59.7 62 46.8
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 1.9e-07 59.3 82 43.9
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 3.3e-07 58.5 45 64.4
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.7e-06 55.1 78 44.9


User provided reference genes

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