Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 6.5e-38 160.2 80 100.0
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.9e-29 132.1 81 84.0
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 5.1e-27 124.0 85 74.1
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 8.8e-27 123.2 81 80.2
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 2.5e-26 121.7 82 70.7
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 7.4e-26 120.2 79 72.2
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 1.7e-25 119.0 77 68.8
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 1.7e-25 119.0 77 71.4
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 2.8e-25 118.2 83 68.7
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 3.7e-25 117.9 82 70.7
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 8.2e-25 116.7 62 90.3
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 1.8e-24 115.5 69 78.3
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 3.1e-24 114.8 77 67.5
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 4.1e-24 114.4 85 67.1
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 4.1e-24 114.4 75 72.0
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 5.3e-24 114.0 70 74.3
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 5.3e-24 114.0 89 61.8
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 9.1e-24 113.2 70 71.4
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 9.1e-24 113.2 77 66.2
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 1.2e-23 112.8 85 63.5
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 1.5e-23 112.5 81 66.7
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 2.0e-23 112.1 76 64.5
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 2.6e-23 111.7 75 68.0
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 2.6e-23 111.7 75 68.0
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 2.6e-23 111.7 68 75.0
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 3.4e-23 111.3 68 73.5
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 3.4e-23 111.3 83 65.1
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 3.4e-23 111.3 79 63.3
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 3.4e-23 111.3 75 68.0
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 3.4e-23 111.3 82 64.6
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 4.5e-23 110.9 79 63.3
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 4.5e-23 110.9 77 67.5
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 5.9e-23 110.5 69 73.9
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 7.7e-23 110.2 76 64.5
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 7.7e-23 110.2 77 63.6
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 1.0e-22 109.8 71 71.8
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 1.0e-22 109.8 71 70.4
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 1.0e-22 109.8 71 70.4
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 1.3e-22 109.4 76 64.5
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 1.7e-22 109.0 80 65.0
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 2.2e-22 108.6 71 67.6
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 2.2e-22 108.6 84 61.9
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 2.2e-22 108.6 84 65.5
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 2.2e-22 108.6 80 67.5
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 3.8e-22 107.8 92 60.9
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 3.8e-22 107.8 73 68.5
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 5.0e-22 107.5 77 62.3
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 5.0e-22 107.5 64 75.0
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 5.0e-22 107.5 80 60.0
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 6.5e-22 107.1 84 65.5
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 8.5e-22 106.7 64 73.4
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 1.1e-21 106.3 86 67.4
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 1.1e-21 106.3 86 67.4
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 1.4e-21 105.9 87 66.7
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 1.9e-21 105.5 61 85.2
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 1.9e-21 105.5 61 85.2
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 1.9e-21 105.5 89 58.4
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 1.9e-21 105.5 86 60.5
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 1.9e-21 105.5 76 61.8
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 1.9e-21 105.5 68 72.1
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 1.9e-21 105.5 81 63.0
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 3.2e-21 104.8 87 63.2
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 4.2e-21 104.4 82 59.8
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 4.2e-21 104.4 68 67.6
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 4.2e-21 104.4 67 76.1
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 5.5e-21 104.0 73 68.5
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 7.2e-21 103.6 71 63.4
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 9.4e-21 103.2 83 59.0
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 9.4e-21 103.2 80 57.5
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 1.2e-20 102.8 75 62.7
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 2.1e-20 102.1 92 54.3
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 3.6e-20 101.3 80 55.0
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 6.1e-20 100.5 81 56.8
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 6.1e-20 100.5 62 82.3
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 1.0e-19 99.8 74 62.2
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 1.4e-19 99.4 87 59.8
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 1.8e-19 99.0 78 56.4
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 1.8e-19 99.0 75 62.7
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 2.3e-19 98.6 62 77.4
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 3.9e-19 97.8 87 59.8
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 3.9e-19 97.8 81 63.0
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 6.7e-19 97.1 66 62.1
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 8.8e-19 96.7 82 61.0
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 1.1e-18 96.3 89 64.0
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 2.0e-18 95.5 88 56.8
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 2.6e-18 95.1 90 63.3
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 2.6e-18 95.1 90 63.3
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 2.6e-18 95.1 90 63.3
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 5.7e-18 94.0 88 63.6
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.2e-17 92.0 75 56.0
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 2.8e-17 91.7 83 56.6
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 6.3e-17 90.5 75 54.7
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 6.3e-17 90.5 75 56.0
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 6.3e-17 90.5 75 54.7
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 1.8e-16 89.0 85 58.8
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 5.3e-16 87.4 54 74.1
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.2e-15 86.3 64 71.9
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.6e-15 85.9 61 67.2
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 2.0e-15 85.5 84 56.0
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 2.0e-15 85.5 70 54.3
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 3.5e-15 84.7 76 55.3
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 3.5e-15 84.7 53 64.2
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 7.7e-15 83.6 105 52.4
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.7e-14 82.4 70 58.6
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 5.0e-14 80.9 46 71.7
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 8.5e-14 80.1 55 67.3
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 8.5e-14 80.1 42 78.6
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 3.2e-13 78.2 116 35.3
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 4.2e-13 77.8 67 52.2
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 5.5e-13 77.4 63 54.0
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 7.2e-13 77.0 63 57.1
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 1.2e-12 76.3 44 75.0
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 2.7e-12 75.1 40 77.5
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 1.4e-11 72.8 90 43.3
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 3.0e-11 71.6 71 47.9
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 1.5e-10 69.3 55 61.8
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 1.5e-10 69.3 59 49.2
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-10 68.6 54 51.9
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 7.5e-10 67.0 46 63.0
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 1.7e-09 65.9 57 47.4
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.7e-09 65.9 62 43.5
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 4.8e-09 64.3 58 46.6
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 6.3e-09 63.9 37 70.3
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 8.2e-09 63.5 48 58.3
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 1.1e-08 63.2 63 42.9
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 1.8e-08 62.4 53 47.2
BNapus_Darmor_BZH_scaffold_293p00030 Brassica napus HOM05D006125 ORTHO05D007404 2.0e-07 58.9 41 73.2
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 2.0e-07 58.9 40 52.5
Potri.004G051201 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.0e-06 56.6 51 45.1
CBR_g24249 Chara braunii HOM05D006125 ORTHO05D007404 3.8e-06 54.7 64 40.6


User provided reference genes

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