Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 3.3e-113 411.8 215 100.0
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 2.6e-102 375.6 215 92.6
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 2.5e-100 369.0 219 89.0
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 4.6e-99 364.8 219 90.4
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 1.7e-96 356.3 221 87.8
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 1.7e-96 356.3 220 86.8
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 1.7e-96 356.3 220 86.8
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 3.7e-96 355.1 220 87.3
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 1.1e-95 353.6 218 87.6
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 4.1e-95 351.7 215 89.8
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 5.3e-95 351.3 220 86.8
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 2.5e-92 342.4 225 86.7
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 1.2e-91 340.1 225 86.2
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 3.0e-90 335.5 218 80.3
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 6.7e-90 334.3 226 85.4
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 7.4e-89 330.9 220 84.5
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 1.3e-88 330.1 227 83.7
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 1.3e-88 330.1 227 83.7
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 5.2e-82 308.1 219 75.3
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 3.2e-76 288.9 178 87.6
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 4.4e-65 251.9 205 68.8
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 5.7e-65 251.5 208 68.3
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 1.7e-64 250.0 205 68.3
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 3.7e-64 248.8 209 65.6
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 8.3e-64 247.7 190 70.5
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.4e-63 246.9 210 66.2
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 1.4e-63 246.9 189 70.4
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 4.5e-62 241.9 218 64.7
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 4.5e-62 241.9 216 65.3
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 7.7e-62 241.1 216 64.8
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 2.9e-61 239.2 198 66.7
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 5.0e-61 238.4 199 67.3
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 1.1e-60 237.3 213 62.0
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 1.1e-60 237.3 214 64.0
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 1.5e-60 236.9 198 67.2
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 1.9e-60 236.5 207 62.8
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 2.5e-60 236.1 192 68.8
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 2.5e-60 236.1 208 65.9
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 5.6e-60 235.0 206 64.6
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 9.5e-60 234.2 195 69.2
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 9.5e-60 234.2 193 66.8
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.2e-59 233.8 205 65.9
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 2.1e-59 233.0 192 67.2
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 2.1e-59 233.0 221 62.0
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 2.8e-59 232.6 204 63.7
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 4.7e-59 231.9 204 64.2
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 8.0e-59 231.1 219 63.0
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 8.0e-59 231.1 221 59.3
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 1.0e-58 230.7 214 63.1
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 1.0e-58 230.7 213 63.4
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 1.4e-58 230.3 212 62.3
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 1.4e-58 230.3 187 67.9
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.8e-58 229.9 199 64.3
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 2.3e-58 229.6 194 63.4
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 4.0e-58 228.8 213 62.0
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 5.2e-58 228.4 198 66.2
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 6.8e-58 228.0 208 63.0
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 6.8e-58 228.0 200 61.0
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 6.8e-58 228.0 205 61.5
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 8.9e-58 227.6 193 65.3
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 8.9e-58 227.6 207 63.3
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 1.5e-57 226.9 225 56.9
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 1.5e-57 226.9 200 61.5
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 3.4e-57 225.7 182 68.1
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 5.7e-57 224.9 207 58.9
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 5.7e-57 224.9 193 62.7
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 7.5e-57 224.6 198 63.6
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 1.3e-56 223.8 200 64.0
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 1.3e-56 223.8 199 64.8
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 1.7e-56 223.4 204 64.2
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 6.4e-56 221.5 226 58.0
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 6.4e-56 221.5 219 60.3
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 6.4e-56 221.5 180 66.7
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 6.4e-56 221.5 219 60.7
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 8.3e-56 221.1 203 62.6
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 1.4e-55 220.3 199 62.3
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 1.8e-55 219.9 211 56.9
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 3.2e-55 219.2 186 65.6
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 4.1e-55 218.8 195 61.5
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 4.1e-55 218.8 206 62.1
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 7.0e-55 218.0 180 66.7
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 7.0e-55 218.0 190 64.7
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 7.0e-55 218.0 205 62.0
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 9.2e-55 217.6 202 58.4
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 1.6e-54 216.9 205 61.5
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 2.0e-54 216.5 212 60.4
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 2.0e-54 216.5 197 61.4
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 3.5e-54 215.7 205 59.5
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 7.8e-54 214.5 198 57.6
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.0e-53 214.2 232 55.2
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 1.3e-53 213.8 225 56.4
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 1.3e-53 213.8 198 63.1
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 3.0e-53 212.6 192 62.5
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 3.0e-53 212.6 138 79.7
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 3.9e-53 212.2 151 71.5
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 3.9e-53 212.2 202 60.4
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 5.0e-53 211.8 206 58.3
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 5.0e-53 211.8 172 65.7
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 6.6e-53 211.5 141 75.2
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 1.5e-52 210.3 199 58.3
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 1.9e-52 209.9 159 73.0
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 5.6e-52 208.4 194 57.2
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 7.3e-52 208.0 157 70.7
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.6e-51 206.8 176 67.0
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 1.6e-51 206.8 193 61.7
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 2.8e-51 206.1 153 70.6
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 2.3e-50 203.0 155 74.2
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 7.5e-49 198.0 198 57.6
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 1.3e-48 197.2 179 63.1
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 1.7e-48 196.8 187 62.0
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 2.2e-48 196.4 158 68.4
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 8.3e-48 194.5 199 62.3
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 1.1e-47 194.1 204 59.3
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 2.4e-47 193.0 197 57.4
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 3.2e-47 192.6 197 57.4
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 7.0e-47 191.4 129 76.0
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 1.2e-46 190.7 130 71.5
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 1.2e-46 190.7 207 54.1
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 3.0e-45 186.0 188 57.4
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 2.8e-43 179.5 118 77.1
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 4.0e-42 175.6 174 57.5
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 4.0e-42 175.6 130 70.0
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 9.8e-41 171.0 135 65.9
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 2.9e-40 169.5 132 67.4
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 8.3e-40 167.9 135 65.9
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 8.3e-40 167.9 134 64.9
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 2.1e-38 163.3 209 50.2
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 1.1e-31 141.0 78 89.7
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 1.1e-31 141.0 78 89.7
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 5.4e-31 138.7 130 61.5
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.9e-28 130.2 213 43.7
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 2.1e-27 126.7 150 48.7
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 2.4e-26 123.2 215 46.0
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 8.4e-24 114.8 125 56.0
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 1.9e-20 103.6 74 74.3
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 1.1e-15 87.8 73 67.1
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 9.3e-15 84.7 70 67.1
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 1.4e-10 70.9 140 40.0
CARHR073520 Cardamine hirsuta HOM05D005382 ORTHO05D006795 1.8e-10 70.5 48 77.1
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 5.3e-10 68.9 45 77.8


User provided reference genes

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