Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 9.6e-65 250.0 124 100.0
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 6.2e-64 247.3 124 98.4
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 1.0e-61 240.0 124 96.0
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 2.1e-59 232.3 124 90.3
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 2.1e-59 232.3 123 90.2
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 6.0e-59 230.7 124 91.1
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 6.0e-59 230.7 124 89.5
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 3.0e-58 228.4 124 88.7
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 3.0e-58 228.4 124 88.7
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 3.0e-58 228.4 124 88.7
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 1.1e-57 226.5 124 87.9
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 1.1e-57 226.5 124 87.9
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 1.1e-57 226.5 124 87.9
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 3.3e-57 224.9 124 87.1
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 1.3e-56 223.0 124 87.1
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 6.5e-53 210.7 117 86.3
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 4.2e-52 208.0 120 84.2
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 2.3e-50 202.2 123 77.2
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 1.1e-49 199.9 123 76.4
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 9.7e-49 196.8 121 77.7
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 2.2e-48 195.7 123 75.6
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 2.8e-48 195.3 113 80.5
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 4.8e-48 194.5 113 80.5
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 4.8e-48 194.5 113 80.5
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 6.3e-48 194.1 112 82.1
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 8.2e-48 193.7 121 74.4
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 8.2e-48 193.7 111 80.2
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 1.1e-47 193.4 115 75.7
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 1.1e-47 193.4 123 74.0
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 1.1e-47 193.4 123 74.0
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 1.1e-47 193.4 123 74.8
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.4e-47 193.0 123 71.5
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 1.4e-47 193.0 113 77.9
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 5.3e-47 191.0 123 70.7
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 6.9e-47 190.7 123 72.4
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 6.9e-47 190.7 117 76.1
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 9.0e-47 190.3 123 70.7
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 1.5e-46 189.5 113 77.9
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 1.5e-46 189.5 114 78.9
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 1.5e-46 189.5 114 78.9
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 2.0e-46 189.1 117 72.6
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 2.0e-46 189.1 113 77.0
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 4.5e-46 188.0 122 73.8
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 5.9e-46 187.6 123 71.5
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 7.7e-46 187.2 123 69.9
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 1.0e-45 186.8 123 70.7
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 1.0e-45 186.8 123 70.7
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 1.7e-45 186.0 120 71.7
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 2.2e-45 185.7 123 69.1
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 2.2e-45 185.7 121 71.1
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 2.2e-45 185.7 123 69.9
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 2.2e-45 185.7 123 69.9
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 5.0e-45 184.5 125 70.4
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 8.5e-45 183.7 116 74.1
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 8.5e-45 183.7 123 69.1
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 8.5e-45 183.7 123 69.1
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 1.1e-44 183.3 121 72.7
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 1.4e-44 183.0 119 71.4
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 1.4e-44 183.0 119 71.4
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 1.9e-44 182.6 123 68.3
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 2.5e-44 182.2 123 68.3
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 3.2e-44 181.8 118 71.2
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 4.2e-44 181.4 123 69.9
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 4.2e-44 181.4 123 69.9
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 4.2e-44 181.4 117 70.9
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 5.5e-44 181.0 123 68.3
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 9.4e-44 180.3 123 67.5
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 1.2e-43 179.9 118 72.9
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.2e-43 179.9 118 72.9
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 1.6e-43 179.5 123 66.7
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 1.6e-43 179.5 112 75.0
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 2.1e-43 179.1 123 66.7
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.7e-43 178.7 145 60.0
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.7e-43 178.7 118 72.0
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.7e-43 178.7 118 72.0
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 3.6e-43 178.3 118 69.5
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 4.6e-43 177.9 110 73.6
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 4.6e-43 177.9 113 73.5
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 4.6e-43 177.9 116 70.7
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 3.0e-42 175.3 111 73.0
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 8.8e-42 173.7 114 68.4
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 1.1e-41 173.3 118 68.6
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 1.1e-41 173.3 116 68.1
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 1.1e-41 173.3 123 67.5
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.0e-41 172.6 137 60.6
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 2.0e-41 172.6 116 68.1
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 2.0e-41 172.6 111 71.2
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 2.0e-41 172.6 111 71.2
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 4.3e-41 171.4 118 69.5
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 5.7e-41 171.0 114 71.1
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 5.7e-41 171.0 114 71.1
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 7.4e-41 170.6 139 59.7
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 9.7e-41 170.2 116 68.1
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 1.7e-40 169.5 116 67.2
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 2.2e-40 169.1 116 67.2
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 3.7e-40 168.3 110 70.0
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 8.2e-40 167.2 121 66.1
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 1.4e-39 166.4 105 70.5
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 1.8e-39 166.0 124 64.5
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 1.8e-39 166.0 150 56.7
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 1.8e-39 166.0 114 67.5
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 1.8e-39 166.0 113 69.0
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 2.4e-39 165.6 113 72.6
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 4.1e-39 164.9 109 67.0
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 5.3e-39 164.5 109 67.0
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 9.1e-39 163.7 106 67.9
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 1.3e-37 159.8 84 95.2
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 3.6e-27 125.2 85 70.6
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 2.0e-25 119.4 65 81.5
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 6.3e-24 114.4 58 96.6
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 8.2e-24 114.0 60 86.7
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 1.1e-23 113.6 109 50.5
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 1.4e-23 113.2 109 47.7
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 4.1e-23 111.7 59 91.5
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 2.0e-22 109.4 109 46.8
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 7.7e-22 107.5 70 68.6
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 1.7e-21 106.3 69 63.8
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 1.1e-20 103.6 72 62.5
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 1.5e-20 103.2 65 66.2
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 1.9e-20 102.8 65 64.6
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 1.9e-20 102.8 64 67.2
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 7.2e-20 100.9 111 45.9
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 4.7e-19 98.2 64 65.6
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 1.0e-18 97.1 52 90.4
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 1.4e-18 96.7 69 72.5
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 5.2e-18 94.7 65 61.5
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 5.2e-18 94.7 74 56.8
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 8.8e-18 94.0 69 69.6
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 1.5e-17 93.2 79 62.0
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 2.0e-17 92.8 58 77.6
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 3.4e-17 92.0 59 78.0
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 9.8e-17 90.5 71 59.2
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 4.8e-16 88.2 59 72.9
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 6.3e-16 87.8 45 91.1
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.4e-15 86.7 57 71.9
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 4.1e-15 85.1 108 44.4
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 9.1e-15 84.0 61 67.2
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 2.9e-13 79.0 69 49.3
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 6.5e-13 77.8 127 34.6
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 1.9e-12 76.3 59 61.0
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 7.7e-06 54.3 42 57.1


User provided reference genes

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