Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 2580.1 1335 100.0
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 2403.2 1336 93.4
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 2240.7 1342 86.9
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 2097.4 1341 83.1
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 2068.9 1344 83.1
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 2063.9 1346 83.0
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 2048.5 1343 82.4
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 2046.2 1343 82.4
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 2034.2 1344 81.9
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 2033.8 1342 80.1
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1824.3 1359 72.1
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 0.0e+00 1684.8 1006 87.3
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1525.8 1376 59.5
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1491.5 1369 58.4
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1487.6 1362 59.7
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1487.6 1356 58.9
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1487.2 1355 58.8
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1486.5 1369 58.5
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1484.5 1369 58.4
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1481.8 1367 58.5
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1479.9 1396 58.2
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1475.3 1356 58.8
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1461.4 1373 57.2
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1442.6 1363 57.9
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1442.2 1400 55.9
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1417.1 1333 58.0
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 0.0e+00 1414.4 799 91.4
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1402.9 1362 57.0
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1395.2 1386 54.9
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1392.1 1346 56.6
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1391.3 1394 56.2
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1390.2 1449 53.7
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1384.8 1363 55.5
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1380.5 1378 54.5
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1376.3 1392 53.9
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1376.3 1362 55.7
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1360.5 1360 55.6
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1350.9 1380 54.9
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1350.5 1384 53.8
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1345.1 1354 54.7
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1344.3 1358 54.9
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1341.3 1377 53.7
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1335.5 1376 53.6
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1335.1 1368 53.9
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1332.4 1365 54.4
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1326.2 1441 52.2
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1326.2 1375 53.2
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1323.5 1323 54.4
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1323.5 1377 53.4
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1313.5 1403 52.5
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1312.7 1355 53.9
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1311.2 1385 52.9
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1305.8 1315 54.3
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1305.4 1372 52.4
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1304.3 1415 50.7
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1302.0 1364 52.2
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1297.7 1350 53.6
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1297.3 1371 53.2
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1295.0 1330 54.7
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1295.0 1342 54.2
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1293.1 1335 53.3
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1285.4 1205 57.1
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1283.5 1361 52.2
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 0.0e+00 1281.5 721 90.3
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1279.6 1356 52.5
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1276.5 1362 52.6
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1250.0 1396 50.6
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1245.3 1471 48.7
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1243.4 1395 50.0
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1239.9 1375 51.1
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1221.1 1365 50.4
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1211.8 1549 46.9
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1208.0 1350 50.6
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1199.1 1379 50.1
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1188.3 1378 49.3
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1184.9 1379 47.1
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1151.0 1346 49.6
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1147.9 1600 45.1
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1124.0 1362 49.0
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1112.1 1124 56.0
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 0.0e+00 1107.0 1355 46.6
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 4.2e-291 1005.4 1103 51.7
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 2.7e-290 1002.7 981 55.9
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 1.8e-273 946.8 1009 53.1
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 8.3e-271 937.9 538 90.1
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 3.5e-269 932.6 1141 46.3
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.8e-268 929.1 1043 50.2
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 5.4e-262 908.7 538 88.3
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 2.0e-245 853.6 1334 40.4
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.3e-231 807.7 843 53.4
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 2.2e-223 780.4 704 58.7
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 4.4e-216 756.1 823 50.7
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 4.1e-185 653.3 1334 35.6
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 4.6e-181 639.8 1378 33.4
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 5.0e-167 593.2 1405 31.4
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 5.5e-158 563.1 615 51.7
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 4.7e-149 533.5 527 53.9
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.2e-138 498.0 448 59.2
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 1.1e-137 495.7 448 60.9
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.6e-133 481.9 666 41.9
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 7.5e-131 473.0 1017 33.4
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 1.7e-122 445.3 399 61.2
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 5.4e-113 413.7 355 60.6
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.6e-99 368.2 471 43.1
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 3.1e-84 318.2 538 40.9
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 3.8e-82 311.2 354 51.1
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 5.5e-81 307.4 721 33.8
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 7.9e-80 303.5 274 59.1
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.3e-79 302.0 473 39.1
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 7.4e-70 270.4 379 44.1
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 8.5e-66 256.9 449 36.1
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 5.1e-63 247.7 177 79.7
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.0e-58 233.4 157 73.9
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 1.8e-55 222.6 193 61.1
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 5.2e-55 221.1 354 38.7
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 3.3e-54 218.4 229 53.7
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 4.4e-54 218.0 138 76.1
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 1.7e-53 216.1 397 38.5
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 2.3e-47 195.7 228 50.4
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 3.0e-47 195.3 150 64.0
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 3.3e-46 191.8 166 60.2
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 9.7e-46 190.3 253 43.5
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 1.4e-44 186.4 215 48.8
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 7.0e-44 184.1 1156 23.3
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 1.6e-40 172.9 267 39.0
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 5.2e-39 167.9 184 53.3
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 4.1e-36 158.3 145 57.9
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 5.4e-36 157.9 660 24.8
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 7.7e-35 154.1 1179 24.4
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 1.4e-31 143.3 136 51.5
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 2.4e-28 132.5 143 49.7
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 9.5e-25 120.6 207 39.6
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.0e-23 117.1 85 67.1
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 1.8e-23 116.3 408 27.0
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 4.0e-23 115.2 584 23.8
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 2.6e-22 112.5 97 53.6
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 3.4e-22 112.1 90 61.1
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.3e-21 110.2 241 35.7
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 8.3e-21 107.5 100 55.0
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.4e-20 106.7 264 31.8
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 2.0e-19 102.8 173 40.5
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 5.0e-18 98.2 143 45.5
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 5.0e-18 98.2 121 47.9
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 8.6e-18 97.4 88 59.1
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 1.9e-17 96.3 149 40.9
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 9.5e-17 94.0 99 47.5
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 4.7e-16 91.7 95 48.4
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 2.3e-15 89.4 75 62.7
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 8.3e-13 80.9 116 41.4
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 1.0e-10 73.9 56 64.3
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 6.6e-10 71.2 73 52.1
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 8.6e-10 70.9 64 56.2
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 3.3e-09 68.9 155 36.8
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 7.3e-09 67.8 155 36.8
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 1.6e-08 66.6 63 54.0
BcaC08g47482 Brassica carinata HOM05D000008 ORTHO05D000005 2.1e-08 66.2 40 87.5
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.1e-07 63.9 137 30.7
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 5.2e-07 61.6 134 33.6
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 5.2e-07 61.6 104 37.5
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 6.8e-07 61.2 95 38.9
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 8.9e-07 60.8 135 34.1
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 8.9e-07 60.8 110 39.1
QL12p004446 Quercus lobata HOM05D004277 ORTHO05D050645 8.9e-07 60.8 61 54.1
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 1.2e-06 60.5 104 37.5
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 2.0e-06 59.7 110 38.2
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 4.4e-06 58.5 60 51.7


User provided reference genes

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