Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 0.0e+00 1503.0 827 100.0
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 0.0e+00 1408.7 831 93.0
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 0.0e+00 1340.5 801 90.4
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 0.0e+00 1246.9 832 82.6
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 0.0e+00 1217.6 835 81.2
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 0.0e+00 1217.6 835 81.2
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 0.0e+00 1211.8 831 81.5
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 0.0e+00 1208.4 832 81.5
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 0.0e+00 1199.5 843 80.0
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 0.0e+00 1199.5 843 80.0
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 0.0e+00 1157.1 837 77.2
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 2.8e-311 1071.6 676 84.6
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 3.4e-299 1031.6 677 83.8
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 6.0e-288 994.2 613 87.9
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 6.6e-287 990.7 845 68.3
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 1.8e-255 886.3 839 59.1
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 4.8e-253 878.2 843 60.1
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 5.3e-252 874.8 837 61.4
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 2.6e-251 872.5 843 59.5
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 3.4e-251 872.1 838 59.3
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 4.5e-251 871.7 844 58.6
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 7.7e-251 870.9 839 59.0
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 1.0e-250 870.5 847 59.6
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 5.0e-250 868.2 845 57.9
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.1e-249 867.1 838 58.4
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 1.9e-249 866.3 846 57.7
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 2.1e-248 862.8 834 59.2
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 6.1e-248 861.3 836 58.4
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 2.0e-246 856.3 847 59.7
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 2.0e-246 856.3 834 61.0
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 9.7e-246 854.0 838 58.9
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 1.3e-245 853.6 846 58.2
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 8.2e-245 850.9 842 58.0
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 7.0e-244 847.8 804 59.3
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 9.1e-244 847.4 838 57.4
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 2.6e-243 845.9 816 57.5
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 1.3e-242 843.6 811 58.1
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 6.5e-242 841.3 841 57.2
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 8.5e-242 840.9 819 58.5
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 1.5e-241 840.1 837 59.5
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 4.2e-241 838.6 812 57.6
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 5.5e-241 838.2 841 56.4
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.2e-240 837.0 813 57.3
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 2.1e-240 836.3 841 57.1
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 4.7e-240 835.1 837 57.9
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 6.1e-240 834.7 816 56.9
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 1.0e-239 833.9 841 56.1
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 1.8e-239 833.2 838 57.3
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.2e-239 831.6 838 56.3
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 8.8e-239 830.9 839 57.8
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 3.1e-236 822.4 828 56.3
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.0e-235 819.7 847 58.3
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 3.5e-235 818.9 817 56.5
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 1.0e-234 817.4 835 55.3
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.7e-234 816.6 847 58.9
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 2.7e-232 809.3 835 55.2
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 3.6e-232 808.9 817 55.1
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 4.0e-231 805.4 836 54.3
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 8.8e-231 804.3 837 54.5
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 3.4e-230 802.4 846 54.1
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 8.3e-229 797.7 809 55.6
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 8.3e-229 797.7 837 55.6
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 7.0e-228 794.7 837 54.4
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.0e-227 793.1 829 55.0
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 2.7e-227 792.7 812 55.0
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 4.5e-227 792.0 817 56.4
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 4.5e-227 792.0 811 54.9
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.5e-225 786.9 835 53.5
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 3.2e-225 785.8 846 57.8
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 5.5e-225 785.0 855 55.1
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.8e-223 780.0 845 52.7
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 5.2e-223 778.5 814 54.4
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 1.5e-222 776.9 832 53.8
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 1.5e-222 776.9 829 53.6
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 2.0e-222 776.5 814 55.0
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 2.0e-219 766.5 840 52.9
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 3.5e-219 765.8 833 53.4
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 8.6e-218 761.1 862 53.6
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.3e-217 759.2 845 51.4
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 8.0e-216 754.6 847 53.1
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 4.0e-215 752.3 811 53.1
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 2.0e-214 750.0 843 51.7
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 4.4e-214 748.8 860 52.6
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 5.4e-212 741.9 829 52.8
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 2.7e-211 739.6 866 50.2
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 5.9e-211 738.4 772 54.9
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 1.7e-205 720.3 842 49.5
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 5.4e-204 715.3 876 49.5
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 5.0e-202 708.8 842 49.8
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 1.6e-200 703.7 855 48.5
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.3e-197 694.1 838 49.0
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 1.6e-195 687.2 931 46.1
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 3.3e-193 679.5 825 50.3
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 7.6e-190 668.3 799 49.2
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 7.6e-190 668.3 853 47.1
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.3e-189 667.5 813 49.1
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 3.8e-189 666.0 831 47.3
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 1.1e-177 627.9 844 46.4
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 5.3e-175 619.0 817 48.8
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.6e-166 590.1 529 58.8
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 8.4e-165 585.1 836 43.9
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 1.2e-150 538.1 606 52.0
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.4e-140 504.6 602 48.2
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 1.4e-138 498.0 893 37.0
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 4.7e-131 473.0 447 55.9
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 7.0e-127 459.1 830 38.9
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 5.0e-125 453.0 893 37.1
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 5.0e-125 453.0 849 37.2
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 1.1e-124 451.8 379 66.2
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.6e-107 394.8 386 58.0
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 8.8e-106 389.0 673 36.8
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 9.8e-105 385.6 443 50.6
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.7e-101 374.8 488 45.7
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.6e-101 372.9 310 59.7
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 2.4e-87 327.8 292 59.2
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 4.1e-87 327.0 451 46.6
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 3.0e-85 320.9 445 44.5
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.1e-76 292.4 336 48.5
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 9.2e-71 272.7 200 67.5
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 2.1e-67 261.5 227 55.9
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 4.7e-67 260.4 242 62.0
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 1.1e-66 259.2 330 50.9
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 3.4e-65 254.2 241 60.6
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 1.3e-64 252.3 282 55.3
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 1.5e-60 238.8 869 29.5
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 8.4e-56 223.0 195 62.1
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 4.6e-54 217.2 272 51.8
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 1.3e-53 215.7 175 72.6
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 2.1e-51 208.4 158 64.6
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 7.1e-47 193.4 274 50.4
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 4.3e-44 184.1 276 48.2
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 4.8e-43 180.6 283 47.0
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 1.2e-41 176.0 214 50.5
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 9.3e-39 166.4 197 56.3
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 2.1e-38 165.2 172 57.0
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 2.7e-38 164.9 200 55.5
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.6e-35 155.6 150 52.0
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 2.2e-35 155.2 206 48.1
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 6.3e-35 153.7 168 54.8
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 1.6e-30 139.0 118 66.1
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 3.0e-29 134.8 593 25.5
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 7.4e-28 130.2 176 41.5
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.8e-26 125.6 600 26.0
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 4.1e-26 124.4 513 23.6
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 2.6e-25 121.7 95 55.8
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 3.2e-23 114.8 102 54.9
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 4.2e-23 114.4 132 48.5
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 4.2e-15 87.8 76 63.2
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.7e-14 85.1 129 40.3
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.6e-12 78.6 107 43.0
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.0e-09 68.9 61 49.2
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 2.6e-09 68.6 55 54.5
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 2.2e-08 65.5 54 53.7
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 4.2e-07 61.2 61 50.8
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 4.2e-07 61.2 61 50.8
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 1.2e-06 59.7 65 47.7
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 2.1e-06 58.9 58 50.0
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 8.0e-06 57.0 158 25.9


User provided reference genes

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