Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G39600 Arabidopsis lyrata HOM05D002071 ORTHO05D002109 5.3e-72 274.2 137 100.0
Thhalv10008187m.g Eutrema salsugineum HOM05D002071 ORTHO05D002109 5.0e-38 161.4 123 67.5
Carub.0001s1628 Capsella rubella HOM05D002071 ORTHO05D002109 3.2e-37 158.7 120 66.7
THA.LOC104808126 Tarenaya hassleriana HOM05D002071 ORTHO05D002109 3.0e-35 152.1 123 65.0
Carub.0002s2600 Capsella rubella HOM05D002071 ORTHO05D002109 8.8e-35 150.6 131 67.2
AL1G28690 Arabidopsis lyrata HOM05D002071 ORTHO05D002109 2.6e-34 149.1 123 63.4
AT1G16520 Arabidopsis thaliana HOM05D002071 ORTHO05D002109 2.8e-33 145.6 123 63.4
Aa31LG7G1070 Aethionema arabicum HOM05D002071 ORTHO05D002109 4.1e-32 141.7 123 62.6
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 1.3e-30 136.7 125 60.8
Sp1g14690 Schrenkiella parvula HOM05D002071 ORTHO05D002109 1.3e-30 136.7 123 59.3
BcaC05g25558 Brassica carinata HOM05D002071 ORTHO05D002109 2.7e-28 129.0 127 59.1
CARHR017000 Cardamine hirsuta HOM05D002071 ORTHO05D002109 4.7e-28 128.3 120 58.3
BcaB02g06637 Brassica carinata HOM05D002071 ORTHO05D002109 1.0e-27 127.1 127 57.5
Sp5g34190 Schrenkiella parvula HOM05D002071 ORTHO05D002109 6.7e-27 124.4 120 54.2
Dinv42502 Davidia involucrata HOM05D002071 ORTHO05D002109 8.8e-27 124.0 117 56.4
BraA06t24415Z Brassica rapa HOM05D002071 ORTHO05D002109 1.1e-26 123.6 128 57.8
A06p12520 Brassica napus HOM05D002071 ORTHO05D002109 2.0e-26 122.9 128 57.8
BolC5t30198H Brassica oleracea HOM05D002071 ORTHO05D002109 2.0e-26 122.9 128 57.8
C05p14780 Brassica napus HOM05D002071 ORTHO05D002109 2.6e-26 122.5 128 57.8
Dinv19606 Davidia involucrata HOM05D000604 ORTHO05D000990 8.2e-25 117.5 109 57.8
Gorai.007G336300 Gossypium raimondii HOM05D002071 ORTHO05D002109 8.2e-25 117.5 120 52.5
TWI38G0753 Tripterygium wilfordii HOM05D002071 ORTHO05D002109 8.2e-25 117.5 120 47.5
Cpa.g.sc331.4 Carica papaya HOM05D002071 ORTHO05D002109 1.8e-24 116.3 125 52.0
Manes.06G173700 Manihot esculenta HOM05D002071 ORTHO05D002109 1.8e-24 116.3 119 53.8
Gohir.A11G291700 Gossypium hirsutum HOM05D002071 ORTHO05D002109 2.4e-24 115.9 120 51.7
Prupe.4G138000 Prunus persica HOM05D002071 ORTHO05D002109 2.4e-24 115.9 119 52.1
TAR629G2653 Trochodendron aralioides HOM05D002071 ORTHO05D002109 3.1e-24 115.5 121 48.8
Manes.14G011805 Manihot esculenta HOM05D002071 ORTHO05D002109 2.0e-23 112.8 120 50.0
Hund12438 Selenicereus undatus HOM05D002071 ORTHO05D002109 2.0e-23 112.8 119 53.8
AUR62026897 Chenopodium quinoa HOM05D002071 ORTHO05D002109 3.5e-23 112.1 119 51.3
Atru.chr1.188 Acer truncatum HOM05D002071 ORTHO05D002109 5.9e-23 111.3 119 49.6
EL10Ac2g03284 Beta vulgaris HOM05D002071 ORTHO05D002109 1.0e-22 110.5 119 48.7
Gohir.D11G300500 Gossypium hirsutum HOM05D002071 ORTHO05D002109 1.7e-22 109.8 120 50.8
Duzib213G0850 Durio zibethinus HOM05D002071 ORTHO05D002109 2.2e-22 109.4 120 48.3
RcHm_v2.0_Chr5g0026171 Rosa chinensis HOM05D002071 ORTHO05D002109 2.9e-22 109.0 117 48.7
FAN16G0661 Fragaria x ananassa HOM05D002071 ORTHO05D002109 3.8e-22 108.6 117 50.4
CiPaw.11G065000 Carya illinoinensis HOM05D002071 ORTHO05D002109 6.5e-22 107.8 118 49.2
AUR62040864 Chenopodium quinoa HOM05D002071 ORTHO05D002109 6.5e-22 107.8 119 49.6
Potri.005G097600 Populus trichocarpa HOM05D002071 ORTHO05D002109 6.5e-22 107.8 122 47.5
Actinidia07364 Actinidia chinensis HOM05D002071 ORTHO05D002109 8.5e-22 107.5 119 53.8
Ah.16g106480 Amaranthus hybridus HOM05D002071 ORTHO05D002109 8.5e-22 107.5 119 49.6
CSS0010808 Camellia sinensis var. sinensis HOM05D002071 ORTHO05D002109 8.5e-22 107.5 119 52.1
FAN21G0659 Fragaria x ananassa HOM05D002071 ORTHO05D002109 8.5e-22 107.5 117 50.4
FAN25G0138 Fragaria x ananassa HOM05D002071 ORTHO05D002109 8.5e-22 107.5 117 50.4
Thecc.07G160300 Theobroma cacao HOM05D002071 ORTHO05D002109 8.5e-22 107.5 120 47.5
CANSAT80G1043 Cannabis sativa HOM05D002071 ORTHO05D002109 1.1e-21 107.1 117 50.4
Psat4g141000 Pisum sativum HOM05D002071 ORTHO05D002109 1.1e-21 107.1 120 45.0
Lj3g0001439 Lotus japonicus HOM05D002071 ORTHO05D002109 1.5e-21 106.7 120 47.5
GSVIVG01020284001 Vitis vinifera HOM05D002071 ORTHO05D002109 1.5e-21 106.7 117 47.0
Ciclev10005358m.g Citrus clementina HOM05D002071 ORTHO05D002109 1.9e-21 106.3 119 48.7
TAR626G1582 Trochodendron aralioides HOM05D002071 ORTHO05D002109 1.9e-21 106.3 121 46.3
arahy.Tifrunner.gnm1.ann1.WXZ4D6 Arachis hypogaea HOM05D002071 ORTHO05D002109 3.2e-21 105.5 120 45.8
Hma1.2p1_0637F.1_g193390 Hydrangea macrophylla HOM05D002071 ORTHO05D002109 4.2e-21 105.1 126 47.6
Hma1.2p1_0151F.1_g067560 Hydrangea macrophylla HOM05D002071 ORTHO05D002109 9.4e-21 104.0 126 46.8
Lalb_Chr19g0133321 Lupinus albus HOM05D002071 ORTHO05D002109 1.2e-20 103.6 120 46.7
TWI39G1254 Tripterygium wilfordii HOM05D002071 ORTHO05D002109 1.2e-20 103.6 103 52.4
Potri.007G066900 Populus trichocarpa HOM05D002071 ORTHO05D002109 1.6e-20 103.2 120 45.0
Eucgr.F04426 Eucalyptus grandis HOM05D002071 ORTHO05D002109 2.1e-20 102.8 119 49.6
COL.COLO4_38371 Corchorus olitorius HOM05D002071 ORTHO05D002109 2.7e-20 102.4 120 45.8
TPR.G28741 Trifolium pratense HOM05D000002 ORTHO05D000001 2.7e-20 102.4 124 45.2
Actinidia12779 Actinidia chinensis HOM05D002071 ORTHO05D002109 3.6e-20 102.1 119 50.4
Sc20g0002830 Simmondsia chinensis HOM05D002071 ORTHO05D002109 3.6e-20 102.1 119 50.4
Glyma.15G212200 Glycine max HOM05D002071 ORTHO05D002109 4.7e-20 101.7 120 45.0
Glyma.08G236200 Glycine max HOM05D002071 ORTHO05D002109 8.0e-20 100.9 120 44.2
FvH4_3g15540 Fragaria vesca HOM05D002071 ORTHO05D002109 1.0e-19 100.5 117 47.9
Sed0026955 Sechium edule HOM05D002071 ORTHO05D002109 1.4e-19 100.1 119 50.4
MSTRG.16107 Avicennia marina HOM05D002071 ORTHO05D002109 1.8e-19 99.8 120 50.8
Cc05_g16230 Coffea canephora HOM05D002071 ORTHO05D002109 1.8e-19 99.8 117 47.9
Sabra05G0079900 Salix brachista HOM05D002071 ORTHO05D002109 1.8e-19 99.8 120 45.0
CSS0016057 Camellia sinensis var. sinensis HOM05D002071 ORTHO05D002109 3.0e-19 99.0 98 53.1
CSS0048525 Camellia sinensis var. sinensis HOM05D002071 ORTHO05D002109 3.0e-19 99.0 98 53.1
CsaV3_6G013640 Cucumis sativus L. HOM05D002071 ORTHO05D002109 4.0e-19 98.6 112 51.8
Ca_27015_v3 Cicer arietinum L. HOM05D002071 ORTHO05D002109 5.2e-19 98.2 120 42.5
Rhsim04G0005400 Rhododendron simsii HOM05D002071 ORTHO05D002109 5.2e-19 98.2 118 48.3
SGA_v2.0_scaffold7G03596 Striga asiatica HOM05D002071 ORTHO05D002109 6.8e-19 97.8 119 50.4
Cfa019415 Carpinus fangiana HOM05D002071 ORTHO05D002109 8.8e-19 97.4 119 44.5
Migut.H01684 Erythranthe guttata HOM05D002071 ORTHO05D002109 8.8e-19 97.4 123 46.3
FAN11G0694 Fragaria x ananassa HOM05D002071 ORTHO05D002109 1.2e-18 97.1 117 47.0
QL04p077077 Quercus lobata HOM05D002071 ORTHO05D002109 1.2e-18 97.1 121 44.6
PGSC0003DMG400011241 Solanum tuberosum HOM05D002071 ORTHO05D002109 2.0e-18 96.3 119 49.6
MSTRG.13072 Avicennia marina HOM05D002071 ORTHO05D002109 2.6e-18 95.9 120 46.7
Sed0010908 Sechium edule HOM05D002071 ORTHO05D002109 2.6e-18 95.9 116 48.3
Lalb_Chr01g0007141 Lupinus albus HOM05D002071 ORTHO05D002109 5.7e-18 94.7 120 45.0
MSTRG.7066 Avicennia marina HOM05D002071 ORTHO05D002109 1.7e-17 93.2 119 45.4
SGA_v2.0_scaffold1110G53845 Striga asiatica HOM05D002071 ORTHO05D002109 1.7e-17 93.2 119 47.9
Actinidia37119 Actinidia chinensis HOM05D002071 ORTHO05D002109 2.2e-17 92.8 119 45.4
Phvul.011G174200 Phaseolus vulgaris HOM05D002071 ORTHO05D002109 2.8e-17 92.4 121 43.8
Migut.M01546 Erythranthe guttata HOM05D002071 ORTHO05D002109 3.7e-17 92.0 119 48.7
Medtr0260s0030 Medicago truncatula HOM05D002071 ORTHO05D002109 3.7e-17 92.0 120 43.3
SalBow8G1388 Salvia bowleyana HOM05D002071 ORTHO05D002109 3.7e-17 92.0 119 47.9
MD10G1203900 Malus domestica HOM05D002071 ORTHO05D002109 6.3e-17 91.3 109 46.8
PSO675G7748 Papaver somniferum HOM05D002071 ORTHO05D002109 6.3e-17 91.3 96 52.1
Actinidia35428 Actinidia chinensis HOM05D002071 ORTHO05D002109 8.3e-17 90.9 111 45.0
Nn7g37944 Nelumbo nucifera HOM05D002071 ORTHO05D002109 8.3e-17 90.9 121 42.1
Nitab4.5_0002321g0040 Nicotiana tabacum HOM05D002071 ORTHO05D002109 8.3e-17 90.9 119 47.9
Sopen10g001550 Solanum pennellii HOM05D002071 ORTHO05D002109 8.3e-17 90.9 117 47.9
Lalb_Chr03g0031741 Lupinus albus HOM05D002071 ORTHO05D002109 1.1e-16 90.5 120 43.3
Solyc07g066520.3 Solanum lycopersicum HOM05D002071 ORTHO05D002109 1.1e-16 90.5 120 46.7
Sopen07g034680 Solanum pennellii HOM05D002071 ORTHO05D002109 1.1e-16 90.5 120 46.7
arahy.Tifrunner.gnm1.ann1.L1XN9H Arachis hypogaea HOM05D002071 ORTHO05D002109 1.4e-16 90.1 91 49.5
Nitab4.5_0002633g0030 Nicotiana tabacum HOM05D002071 ORTHO05D002109 1.4e-16 90.1 119 47.1
Solyc10g005580.3 Solanum lycopersicum HOM05D002071 ORTHO05D002109 1.4e-16 90.1 119 47.9
MD05G1222300 Malus domestica HOM05D002071 ORTHO05D002109 1.8e-16 89.7 109 46.8
PSO675G2413 Papaver somniferum HOM05D002071 ORTHO05D002109 4.1e-16 88.6 96 51.0
MBI18_g37407_MAGBIO Magnolia biondii HOM05D002071 ORTHO05D002109 5.3e-16 88.2 120 42.5
PGSC0003DMG400022123 Solanum tuberosum HOM05D002071 ORTHO05D002109 5.3e-16 88.2 109 47.7
SGA_v2.0_scaffold239G44048 Striga asiatica HOM05D002071 ORTHO05D002109 9.1e-16 87.4 117 44.4
THA.LOC104816069 Tarenaya hassleriana HOM05D002071 ORTHO05D002109 9.1e-16 87.4 117 42.7
vmacro09777 Vaccinium macrocarpon HOM05D002071 ORTHO05D002109 1.2e-15 87.0 145 40.0
Peaxi162Scf00452g00621 Petunia axillaris HOM05D002071 ORTHO05D002109 3.5e-15 85.5 119 44.5
CAN.G943.44 Capsicum annuum HOM05D002071 ORTHO05D002109 4.5e-15 85.1 119 45.4
CARHR045800 Cardamine hirsuta HOM05D002071 ORTHO05D002109 1.3e-14 83.6 121 41.3
HanXRQChr11g0335051 Helianthus annuus HOM05D002071 ORTHO05D002109 1.7e-14 83.2 119 41.2
ECA236G3752 Erigeron canadensis HOM05D002071 ORTHO05D002109 2.2e-14 82.8 123 40.7
AL1G64330 Arabidopsis lyrata HOM05D002071 ORTHO05D002109 2.9e-14 82.4 118 41.5
AT1G56080 Arabidopsis thaliana HOM05D002071 ORTHO05D002109 6.5e-14 81.3 118 42.4
Lsat_1_v5_gn_7_111701 Lactuca sativa HOM05D002071 ORTHO05D002109 8.5e-14 80.9 119 44.5
Aqoxy4G00030 Aquilegia oxysepala HOM05D002071 ORTHO05D002109 1.5e-13 80.1 91 45.1
Thhalv10011668m.g Eutrema salsugineum HOM05D002071 ORTHO05D002109 2.5e-13 79.3 96 45.8
Lj1A907T21 Lonicera japonica HOM05D002071 ORTHO05D002109 2.5e-13 79.3 119 41.2
Sp1g41700 Schrenkiella parvula HOM05D002071 ORTHO05D002109 4.2e-13 78.6 110 45.5
DCAR_030853 Daucus carota HOM05D002071 ORTHO05D002109 5.5e-13 78.2 109 43.1
ATR0763G240 Amborella trichopoda HOM05D002071 ORTHO05D002109 7.2e-13 77.8 126 36.5
Os01g0768300 Oryza sativa ssp. japonica HOM05D002071 ORTHO05D002109 7.2e-13 77.8 90 50.0
Carub.0001s4468 Capsella rubella HOM05D002071 ORTHO05D002109 1.2e-12 77.0 110 42.7
HPP92_000948 Vanilla planifolia HOM05D002071 ORTHO05D002109 2.7e-12 75.9 95 43.2
MBI05_g09168_MAGBIO Magnolia biondii HOM05D002071 ORTHO05D002109 3.6e-12 75.5 83 50.6
ClCG02G018560 Citrullus lanatus HOM05D002071 ORTHO05D002109 1.8e-11 73.2 119 40.3
C06p10940 Brassica napus HOM05D005640 ORTHO05D007124 2.3e-11 72.8 98 44.9
BolC6t36176H Brassica oleracea HOM05D002071 ORTHO05D002109 2.3e-11 72.8 98 44.9
BcaC08g43675 Brassica carinata HOM05D002071 ORTHO05D002109 8.8e-11 70.9 98 43.9
Gohir.A01G095700 Gossypium hirsutum HOM05D002071 ORTHO05D002109 4.4e-10 68.6 79 44.3
BraSC56t46386Z Brassica rapa HOM05D002071 ORTHO05D002109 9.8e-10 67.4 68 54.4
Zm00001eb052610 Zea mays HOM05D002071 ORTHO05D002109 1.7e-09 66.6 83 45.8
Zm00001eb152070 Zea mays HOM05D002071 ORTHO05D002109 1.7e-09 66.6 97 46.4
Zm00001eb218110 Zea mays HOM05D002071 ORTHO05D002109 2.8e-09 65.9 82 43.9
BcaB07g33171 Brassica carinata HOM05D002071 ORTHO05D002109 6.3e-09 64.7 107 42.1
MELO3C019653.2 Cucumis melo HOM05D002071 ORTHO05D002109 3.1e-08 62.4 94 42.6
CDE02G1266 Ceratophyllum demersum HOM05D002071 ORTHO05D002109 3.5e-07 58.9 85 41.2
Nitab4.5_0000611g0040 Nicotiana tabacum HOM05D002071 ORTHO05D002109 3.5e-07 58.9 119 37.8
Oeu051671.4 Olea europaea HOM05D002071 ORTHO05D002109 2.3e-06 56.2 169 32.0
Nitab4.5_0008429g0020 Nicotiana tabacum HOM05D002071 ORTHO05D002109 3.8e-06 55.5 119 36.1
SEGI_31224 Sequoiadendron giganteum HOM05D002071 ORTHO05D002109 3.8e-06 55.5 69 42.0
SGA_v2.0_scaffold186G40210 Striga asiatica HOM05D005437 ORTHO05D006699 5.0e-06 55.1 56 48.2


User provided reference genes

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