Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 2.2e-260 901.7 452 100.0
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 5.7e-248 860.5 456 95.2
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 8.8e-241 836.6 456 93.0
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.7e-236 822.4 456 90.8
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 4.1e-230 801.2 458 89.5
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 1.4e-222 776.2 459 85.6
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 4.1e-222 774.6 459 85.2
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 2.0e-221 772.3 459 85.0
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 2.9e-220 768.5 460 85.0
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 6.5e-220 767.3 455 85.1
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 1.1e-219 766.5 450 86.4
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 1.6e-218 762.7 454 86.1
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 1.6e-218 762.7 454 86.1
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 8.0e-218 760.4 454 85.9
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 9.8e-216 753.4 456 85.5
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.4e-214 749.6 450 85.1
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 5.4e-214 747.7 452 84.7
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 7.7e-213 743.8 454 84.6
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 3.8e-212 741.5 454 84.6
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 1.1e-211 740.0 456 85.1
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 3.2e-211 738.4 451 84.7
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 1.6e-205 719.5 459 79.5
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 2.2e-191 672.5 446 78.0
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 4.9e-191 671.4 445 77.1
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.3e-188 663.3 446 76.5
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 1.7e-188 662.9 460 73.7
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.7e-188 662.9 459 74.5
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 8.1e-186 654.1 446 76.0
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 6.8e-185 651.0 459 72.5
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 3.4e-184 648.7 466 70.6
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 9.9e-184 647.1 466 72.1
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 4.9e-183 644.8 459 71.9
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 4.9e-183 644.8 459 71.9
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 6.4e-183 644.4 459 71.7
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 8.3e-183 644.0 461 71.4
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 8.3e-183 644.0 459 71.7
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 1.2e-181 640.2 453 72.4
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 2.7e-181 639.0 462 71.2
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 3.5e-181 638.6 448 74.1
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 2.5e-179 632.5 459 71.2
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 7.3e-179 630.9 447 74.7
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 9.5e-179 630.6 459 71.9
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 1.6e-178 629.8 458 71.2
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 2.8e-178 629.0 459 69.7
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 3.8e-175 618.6 459 71.0
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 6.4e-175 617.8 463 69.5
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 1.4e-174 616.7 465 68.6
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 4.1e-174 615.1 441 72.1
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 7.1e-174 614.4 463 69.3
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 9.2e-174 614.0 475 67.2
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 9.2e-174 614.0 463 69.5
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.2e-173 613.6 463 69.3
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 2.1e-173 612.8 461 69.8
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.0e-172 610.5 463 69.3
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 2.3e-172 609.4 451 69.8
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 3.0e-172 609.0 460 68.3
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 3.9e-172 608.6 467 67.0
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 5.1e-172 608.2 460 68.9
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 6.6e-172 607.8 460 68.7
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 1.9e-171 606.3 459 68.8
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 3.3e-171 605.5 450 70.2
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 2.1e-170 602.8 459 68.2
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.4e-169 600.1 453 69.3
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.4e-169 600.1 459 68.0
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 1.4e-169 600.1 460 69.6
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 2.4e-169 599.4 496 64.9
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 3.4e-168 595.5 456 66.4
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 4.4e-168 595.1 479 65.8
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 7.6e-168 594.3 451 69.6
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 2.2e-167 592.8 452 68.1
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 2.9e-167 592.4 456 68.9
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 2.9e-167 592.4 459 67.8
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 4.9e-167 591.7 460 67.0
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 4.9e-167 591.7 460 67.2
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 8.4e-167 590.9 463 68.0
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.9e-166 589.7 452 67.9
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 7.1e-166 587.8 480 65.6
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 1.2e-165 587.0 449 69.3
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.1e-165 586.3 453 66.9
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 2.7e-165 585.9 449 67.0
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 3.5e-165 585.5 431 71.2
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 4.6e-165 585.1 457 66.3
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 6.0e-165 584.7 530 59.4
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 1.3e-164 583.6 447 68.0
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 3.0e-164 582.4 477 64.8
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 3.9e-164 582.0 447 68.0
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 3.9e-164 582.0 474 66.0
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 1.9e-163 579.7 438 69.2
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 1.6e-162 576.6 460 66.5
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 2.8e-162 575.9 432 69.0
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 8.1e-162 574.3 450 67.1
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.4e-161 573.5 452 65.0
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 4.0e-161 572.0 459 66.0
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 5.3e-161 571.6 452 64.8
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 9.0e-161 570.9 459 66.7
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.2e-160 570.5 452 65.0
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 1.5e-160 570.1 461 66.4
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 2.2e-159 566.2 452 65.9
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 2.2e-159 566.2 452 64.8
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 6.4e-159 564.7 458 65.5
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 8.4e-159 564.3 450 66.7
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 1.9e-158 563.1 456 64.5
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 1.6e-157 560.1 487 62.8
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 4.6e-157 558.5 342 83.0
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 4.3e-155 552.0 452 63.7
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 9.6e-155 550.8 446 63.9
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 1.3e-154 550.4 464 65.3
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 1.6e-154 550.1 453 63.8
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 2.1e-154 549.7 446 63.9
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 2.8e-154 549.3 451 62.7
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.7e-154 548.9 452 63.7
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.2e-152 543.9 413 67.6
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 5.5e-150 535.0 457 65.2
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 1.6e-149 533.5 423 67.6
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 7.9e-149 531.2 460 61.3
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 3.0e-148 529.3 457 64.6
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 8.7e-148 527.7 438 63.9
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 5.6e-147 525.0 421 65.8
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 3.7e-146 522.3 529 53.9
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 7.6e-144 514.6 468 59.8
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.0e-140 504.2 450 62.2
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 5.7e-139 498.4 446 59.0
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.3e-138 497.3 455 59.3
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 8.2e-138 494.6 419 63.7
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.4e-137 493.0 438 63.2
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.5e-136 488.8 431 60.1
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 1.2e-133 480.7 453 58.9
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 5.7e-131 471.9 409 63.6
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 3.7e-122 442.6 519 51.4
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.9e-118 430.3 434 54.8
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 2.5e-118 429.9 291 75.3
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.8e-116 423.7 379 61.2
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.6e-109 400.6 325 63.7
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 1.4e-108 397.5 448 50.9
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 2.3e-108 396.7 462 50.2
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 1.5e-107 394.0 448 50.2
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 4.2e-102 375.9 457 47.7
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.4e-99 366.3 252 72.6
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.0e-92 344.7 195 90.3
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 5.7e-91 339.0 322 60.2
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 4.5e-88 329.3 311 59.2
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 1.5e-83 314.3 195 80.0
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 9.2e-81 305.1 458 43.0
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 2.4e-73 280.4 330 47.3
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 4.1e-73 279.6 291 54.3
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 8.6e-71 271.9 218 63.3
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 4.0e-68 263.1 530 37.5
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.3e-66 258.1 195 66.7
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 1.2e-64 251.5 186 68.3
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 2.1e-64 250.8 205 62.0
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 9.5e-62 241.9 231 58.0
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 2.1e-61 240.7 154 77.3
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 1.2e-59 235.0 263 52.5
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 1.0e-55 221.9 122 90.2
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 4.9e-50 203.0 282 44.0
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 4.9e-50 203.0 221 51.6
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 3.3e-46 190.3 130 75.4
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 4.8e-45 186.4 169 55.6
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 3.1e-44 183.7 136 68.4
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 2.0e-43 181.0 321 38.3
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 1.2e-40 171.8 482 30.7
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 2.5e-33 147.5 295 34.2
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 4.2e-33 146.7 156 55.1
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 7.9e-32 142.5 167 45.5
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.2e-26 124.4 74 79.7
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.1e-25 122.1 79 81.0
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 9.3e-25 119.0 79 70.9
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 1.6e-24 118.2 73 83.6
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 1.1e-22 112.1 114 58.8
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 1.3e-18 98.6 156 44.9
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 2.2e-18 97.8 116 54.3
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 5.1e-15 86.7 132 44.7
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 5.1e-15 86.7 54 77.8
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 3.7e-13 80.5 52 78.8
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.0e-10 72.4 53 71.7
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 1.7e-10 71.6 51 68.6
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 2.1e-08 64.7 40 77.5
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 2.1e-08 64.7 76 51.3
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 7.9e-08 62.8 51 62.7
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.4e-07 62.0 61 52.5
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 4.4e-06 57.0 36 66.7


User provided reference genes

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