Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G39450 Arabidopsis lyrata HOM05D007341 ORTHO05D009075 8.0e-80 300.4 160 100.0
AT1G78995 Arabidopsis thaliana HOM05D007341 ORTHO05D009075 3.5e-67 258.5 163 83.4
Carub.0002s2586 Capsella rubella HOM05D007341 ORTHO05D009075 2.3e-63 245.7 161 82.0
CARHR072660 Cardamine hirsuta HOM05D007341 ORTHO05D009075 3.1e-63 245.4 160 80.6
BcaB02g07190 Brassica carinata HOM05D007341 ORTHO05D009075 3.4e-62 241.9 160 80.0
Thhalv10019269m.g Eutrema salsugineum HOM05D007341 ORTHO05D009075 4.4e-62 241.5 162 80.2
BcaC08g45393 Brassica carinata HOM05D007341 ORTHO05D009075 2.2e-61 239.2 160 78.1
C06p30240 Brassica napus HOM05D007341 ORTHO05D009075 2.2e-61 239.2 160 78.1
BolC6t38187H Brassica oleracea HOM05D007341 ORTHO05D009075 2.2e-61 239.2 160 78.1
BraA07t30379Z Brassica rapa HOM05D007341 ORTHO05D009075 1.4e-60 236.5 160 76.9
A07p27380 Brassica napus HOM05D007341 ORTHO05D009075 4.1e-60 235.0 160 78.1
Sp5g34040 Schrenkiella parvula HOM05D007341 ORTHO05D009075 3.6e-56 221.9 160 76.2
THA.LOC104808109 Tarenaya hassleriana HOM05D007341 ORTHO05D009075 6.0e-43 177.9 169 58.6
Gorai.009G121500 Gossypium raimondii HOM05D007341 ORTHO05D009075 2.0e-38 162.9 106 76.4
Gohir.D05G117600 Gossypium hirsutum HOM05D007341 ORTHO05D009075 3.4e-38 162.2 106 75.5
Gohir.A05G116700 Gossypium hirsutum HOM05D007341 ORTHO05D009075 4.4e-38 161.8 106 76.4
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 7.6e-38 161.0 90 81.1
TWI12G0959 Tripterygium wilfordii HOM05D007341 ORTHO05D009075 1.3e-37 160.2 99 76.8
QL05p085130 Quercus lobata HOM05D007341 ORTHO05D009075 2.2e-37 159.5 98 77.6
Cfa002160 Carpinus fangiana HOM05D007341 ORTHO05D009075 3.8e-37 158.7 166 52.4
Cc06_g16890 Coffea canephora HOM05D007341 ORTHO05D009075 3.8e-37 158.7 100 78.0
CiPaw.01G092200 Carya illinoinensis HOM05D007341 ORTHO05D009075 4.9e-37 158.3 152 57.9
Sed0003722 Sechium edule HOM05D007341 ORTHO05D009075 6.4e-37 157.9 98 77.6
Thecc.06G049400 Theobroma cacao HOM05D007341 ORTHO05D009075 6.4e-37 157.9 99 77.8
GSVIVG01029444001 Vitis vinifera HOM05D007341 ORTHO05D009075 6.4e-37 157.9 95 81.1
Haze_16246 Corylus avellana HOM05D007341 ORTHO05D009075 1.1e-36 157.1 99 75.8
Eucgr.F04060 Eucalyptus grandis HOM05D007341 ORTHO05D009075 1.1e-36 157.1 101 74.3
Prupe.3G028000 Prunus persica HOM05D007341 ORTHO05D009075 1.4e-36 156.8 99 76.8
MELO3C019561.2 Cucumis melo HOM05D007341 ORTHO05D009075 1.9e-36 156.4 98 76.5
CsaV3_3G018050 Cucumis sativus L. HOM05D007341 ORTHO05D009075 4.2e-36 155.2 94 79.8
Duzib235G0177 Durio zibethinus HOM05D007341 ORTHO05D009075 5.4e-36 154.8 98 77.6
Sabra07G0002700 Salix brachista HOM05D007341 ORTHO05D009075 5.4e-36 154.8 98 75.5
Lsat_1_v5_gn_9_114620 Lactuca sativa HOM05D007341 ORTHO05D009075 7.1e-36 154.5 103 72.8
Dinv20313 Davidia involucrata HOM05D007341 ORTHO05D009075 9.3e-36 154.1 136 61.8
RcHm_v2.0_Chr2g0148351 Rosa chinensis HOM05D007341 ORTHO05D009075 2.1e-35 152.9 99 72.7
MD09G1169800 Malus domestica HOM05D007341 ORTHO05D009075 2.7e-35 152.5 99 73.7
Nitab4.5_0000349g0220 Nicotiana tabacum HOM05D007341 ORTHO05D009075 2.7e-35 152.5 98 75.5
Potri.007G003600 Populus trichocarpa HOM05D007341 ORTHO05D009075 2.7e-35 152.5 98 74.5
Ciclev10029418m.g Citrus clementina HOM05D007341 ORTHO05D009075 3.5e-35 152.1 100 72.0
ECA240G2002 Erigeron canadensis HOM05D007341 ORTHO05D009075 6.0e-35 151.4 169 53.3
FvH4_6g36350 Fragaria vesca HOM05D007341 ORTHO05D009075 6.0e-35 151.4 134 59.7
FAN02G2832 Fragaria x ananassa HOM05D007341 ORTHO05D009075 6.0e-35 151.4 133 59.4
HanXRQChr03g0072101 Helianthus annuus HOM05D007341 ORTHO05D009075 1.7e-34 149.8 101 72.3
PGSC0003DMG400019203 Solanum tuberosum HOM05D007341 ORTHO05D009075 1.7e-34 149.8 97 74.2
CSS0015626 Camellia sinensis var. sinensis HOM05D007341 ORTHO05D009075 3.9e-34 148.7 99 72.7
Solyc10g086470.2 Solanum lycopersicum HOM05D007341 ORTHO05D009075 3.9e-34 148.7 97 73.2
Sopen10g035850 Solanum pennellii HOM05D007341 ORTHO05D009075 3.9e-34 148.7 97 73.2
PGR102G3137 Punica granatum HOM05D007341 ORTHO05D009075 6.6e-34 147.9 134 57.5
CANSAT01G1666 Cannabis sativa HOM05D007341 ORTHO05D009075 2.5e-33 146.0 106 67.9
FAN09G2851 Fragaria x ananassa HOM05D007341 ORTHO05D009075 2.5e-33 146.0 133 58.6
Actinidia38822 Actinidia chinensis HOM05D007341 ORTHO05D009075 4.3e-33 145.2 173 50.3
Hma1.2p1_0422F.1_g150100 Hydrangea macrophylla HOM05D007341 ORTHO05D009075 4.3e-33 145.2 98 70.4
Lalb_Chr24g0392671 Lupinus albus HOM05D007341 ORTHO05D009075 4.3e-33 145.2 90 75.6
MSTRG.26115 Avicennia marina HOM05D007341 ORTHO05D009075 9.6e-33 144.1 161 54.7
CDE05G1356 Ceratophyllum demersum HOM05D007341 ORTHO05D009075 2.8e-32 142.5 89 77.5
Aqoxy7G02561 Aquilegia oxysepala HOM05D007341 ORTHO05D009075 3.6e-32 142.1 142 53.5
AUR62001305 Chenopodium quinoa HOM05D007341 ORTHO05D009075 4.8e-32 141.7 107 66.4
AUR62025687 Chenopodium quinoa HOM05D007341 ORTHO05D009075 6.2e-32 141.4 107 65.4
TAR636G1203 Trochodendron aralioides HOM05D007341 ORTHO05D009075 6.2e-32 141.4 162 53.1
DCAR_027600 Daucus carota HOM05D007341 ORTHO05D009075 3.1e-31 139.0 97 69.1
Glyma.15G000400 Glycine max HOM05D007341 ORTHO05D009075 5.3e-31 138.3 142 54.2
Mapoly0061s0126 Marchantia polymorpha HOM05D007341 ORTHO05D009075 5.3e-31 138.3 95 69.5
Medtr6g004140 Medicago truncatula HOM05D007341 ORTHO05D009075 6.9e-31 137.9 95 72.6
Pp3c15_22740 Physcomitrium patens HOM05D007341 ORTHO05D009075 1.2e-30 137.1 94 69.1
Hund18551 Selenicereus undatus HOM05D007341 ORTHO05D009075 2.6e-30 136.0 104 67.3
HPP92_026441 Vanilla planifolia HOM05D007341 ORTHO05D009075 2.6e-30 136.0 133 54.1
EL10Ac7g18105 Beta vulgaris HOM05D007341 ORTHO05D009075 3.4e-30 135.6 168 47.6
Phvul.005G082000 Phaseolus vulgaris HOM05D007341 ORTHO05D009075 4.5e-30 135.2 91 70.3
ATR0626G096 Amborella trichopoda HOM05D007341 ORTHO05D009075 9.9e-30 134.0 90 71.1
Migut.K00075 Erythranthe guttata HOM05D007341 ORTHO05D009075 2.9e-29 132.5 159 50.3
unitig_748.g7237 Utricularia gibba HOM05D007341 ORTHO05D009075 2.9e-29 132.5 146 52.7
Zm00001eb227230 Zea mays HOM05D007341 ORTHO05D009075 1.9e-28 129.8 101 63.4
C02p36120 Brassica napus HOM05D007341 ORTHO05D009075 2.4e-28 129.4 63 90.5
Os06g0704200 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 3.5e-27 125.6 97 68.0
DCAR_011722 Daucus carota HOM05D007341 ORTHO05D009075 4.6e-27 125.2 156 46.8
PSO170G4447 Papaver somniferum HOM05D007341 ORTHO05D009075 8.7e-26 120.9 93 64.5
SGA_v2.0_scaffold94G28462 Striga asiatica HOM05D007341 ORTHO05D009075 1.1e-25 120.6 95 65.3
Aa31LG4G1990 Aethionema arabicum HOM05D007341 ORTHO05D009075 1.5e-25 120.2 138 56.5
PSO063G2737 Papaver somniferum HOM05D007341 ORTHO05D009075 1.9e-25 119.8 93 65.6
SMO232G0085 Selaginella moellendorffii HOM05D007341 ORTHO05D009075 2.5e-25 119.4 90 63.3
ClCG05G010440 Citrullus lanatus HOM05D007341 ORTHO05D009075 4.8e-24 115.2 81 70.4
Cpa.g.sc4293.1 Carica papaya HOM05D007341 ORTHO05D009075 1.4e-23 113.6 75 74.7
FAN14G2925 Fragaria x ananassa HOM05D007341 ORTHO05D009075 5.8e-22 108.2 134 49.3
FAN14G4935 Fragaria x ananassa HOM05D007341 ORTHO05D009075 5.8e-22 108.2 134 49.3
VMungo1080G1509 Vigna mungo HOM05D007341 ORTHO05D009075 5.8e-22 108.2 75 70.7
Nitab4.5_0001911g0010 Nicotiana tabacum HOM05D007341 ORTHO05D009075 9.9e-22 107.5 148 46.6
Sabra14G0002900 Salix brachista HOM05D007341 ORTHO05D009075 1.3e-21 107.1 81 59.3
Nn8g41280 Nelumbo nucifera HOM05D007341 ORTHO05D009075 5.5e-20 101.7 114 52.6
Sc16g0003760 Simmondsia chinensis HOM05D007341 ORTHO05D009075 7.1e-20 101.3 80 66.2
Peaxi162Scf00330g00029 Petunia axillaris HOM05D007341 ORTHO05D009075 3.5e-19 99.0 110 52.7
Os02g0138100 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 4.8e-16 88.6 76 55.3
Cre01.g000800 Chlamydomonas reinhardtii HOM05D007341 ORTHO05D009075 1.8e-15 86.7 102 47.1
Manes.06G177800 Manihot esculenta HOM05D007341 ORTHO05D009075 1.2e-14 84.0 67 62.7
Oeu004021.1 Olea europaea HOM05D007341 ORTHO05D009075 2.6e-14 82.8 97 54.6
vmacro18722 Vaccinium macrocarpon HOM05D007341 ORTHO05D009075 1.0e-13 80.9 137 41.6
Rhsim08G0252300 Rhododendron simsii HOM05D000912 ORTHO05D009075 2.9e-13 79.3 120 46.7
Psat6g000680 Pisum sativum HOM05D007341 ORTHO05D009075 8.4e-13 77.8 56 69.6
MCO04G269 Micromonas commoda HOM05D007341 ORTHO05D009075 1.4e-12 77.0 84 42.9
MBI13_g34919_MAGBIO Magnolia biondii HOM05D007341 ORTHO05D009075 2.5e-12 76.3 47 78.7
Lj9A544T49 Lonicera japonica HOM05D007341 ORTHO05D009075 3.2e-12 75.9 67 59.7
SalBow1G8719 Salvia bowleyana HOM05D007341 ORTHO05D009075 3.2e-12 75.9 91 50.5
Ah.08g218010 Amaranthus hybridus HOM05D007341 ORTHO05D009075 2.1e-11 73.2 171 34.5
SalBow1G7986 Salvia bowleyana HOM05D007341 ORTHO05D009075 3.5e-11 72.4 68 58.8
PRCOL_00000561 Prasinoderma coloniale HOM05D007341 ORTHO05D009075 4.6e-11 72.0 125 35.2
AagrBONN_evm.TU.Sc2ySwM_368.1307 Anthoceros agrestis HOM05D007341 ORTHO05D009075 6.1e-11 71.6 60 61.7
BolC2t09625H Brassica oleracea HOM05D031861 ORTHO05D009075 3.7e-08 62.4 34 85.3
A02p22440 Brassica napus HOM05D031861 ORTHO05D009075 1.1e-07 60.8 92 46.7
BraA02t07248Z Brassica rapa HOM05D031861 ORTHO05D009075 2.6e-06 56.2 105 41.0


User provided reference genes

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