Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G39340 Arabidopsis lyrata HOM05D007236 ORTHO05D009150 3.3e-212 741.5 385 100.0
AT1G78915 Arabidopsis thaliana HOM05D007236 ORTHO05D009150 4.6e-198 694.5 405 91.1
Carub.0002s2575 Capsella rubella HOM05D007236 ORTHO05D009150 6.2e-195 684.1 387 92.5
Sp5g33940 Schrenkiella parvula HOM05D007236 ORTHO05D009150 3.0e-189 665.2 387 90.4
CARHR072510 Cardamine hirsuta HOM05D007236 ORTHO05D009150 4.8e-187 657.9 389 88.7
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 6.0e-182 641.0 389 86.6
BcaB02g07186 Brassica carinata HOM05D007236 ORTHO05D009150 3.9e-181 638.3 388 86.6
BolC6t38197H Brassica oleracea HOM05D007236 ORTHO05D009150 2.1e-179 632.5 400 84.2
A07p27420 Brassica napus HOM05D007236 ORTHO05D009150 5.3e-178 627.9 417 81.1
C06p30340 Brassica napus HOM05D007236 ORTHO05D009150 1.4e-175 619.8 422 79.9
BraA07t30383Z Brassica rapa HOM05D007236 ORTHO05D009150 6.2e-171 604.4 410 80.0
Aa31LG4G2080 Aethionema arabicum HOM05D007236 ORTHO05D009150 4.5e-169 598.2 384 81.0
Thhalv10018805m.g Eutrema salsugineum HOM05D007236 ORTHO05D009150 5.1e-157 558.1 387 80.4
THA.LOC104812331 Tarenaya hassleriana HOM05D007236 ORTHO05D009150 9.7e-156 553.9 393 73.5
Thecc.06G055000 Theobroma cacao HOM05D007236 ORTHO05D009150 7.0e-138 494.6 403 65.8
Manes.06G179100 Manihot esculenta HOM05D007236 ORTHO05D009150 5.5e-135 485.0 385 64.9
Duzib160G0063 Durio zibethinus HOM05D007236 ORTHO05D009150 2.7e-134 482.6 400 64.2
GSVIVG01029561001 Vitis vinifera HOM05D007236 ORTHO05D009150 1.8e-133 479.9 391 65.5
Potri.008G003800 Populus trichocarpa HOM05D007236 ORTHO05D009150 1.2e-132 477.2 389 63.8
QL05p088536 Quercus lobata HOM05D007236 ORTHO05D009150 5.7e-132 474.9 384 65.1
Sabra08G0001500 Salix brachista HOM05D007236 ORTHO05D009150 3.7e-131 472.2 399 62.7
Dinv20327 Davidia involucrata HOM05D007236 ORTHO05D009150 9.1e-130 467.6 392 62.8
Lj3g0020822 Lotus japonicus HOM05D007236 ORTHO05D009150 1.0e-128 464.2 385 64.7
Gohir.A06G116300 Gossypium hirsutum HOM05D007236 ORTHO05D009150 2.5e-127 459.5 399 62.7
Eucgr.J03184 Eucalyptus grandis HOM05D007236 ORTHO05D009150 4.2e-127 458.8 399 61.9
Gorai.010G141500 Gossypium raimondii HOM05D007236 ORTHO05D009150 1.2e-126 457.2 410 61.5
Prupe.3G024200 Prunus persica HOM05D007236 ORTHO05D009150 4.7e-126 455.3 395 61.8
RcHm_v2.0_Chr2g0149221 Rosa chinensis HOM05D007236 ORTHO05D009150 8.0e-126 454.5 406 60.8
FAN09G1281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 2.3e-125 453.0 406 59.6
TWI18G0405 Tripterygium wilfordii HOM05D007236 ORTHO05D009150 1.5e-124 450.3 386 63.2
FvH4_6g36830 Fragaria vesca HOM05D007236 ORTHO05D009150 3.4e-124 449.1 407 59.2
AUR62025709 Chenopodium quinoa HOM05D007236 ORTHO05D009150 4.4e-124 448.7 405 60.0
MD09G1166500 Malus domestica HOM05D007236 ORTHO05D009150 4.4e-124 448.7 395 60.3
TAR636G0504 Trochodendron aralioides HOM05D007236 ORTHO05D009150 5.7e-124 448.4 389 61.2
FAN14G0281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 7.5e-124 448.0 407 59.2
Glyma.08G225400 Glycine max HOM05D007236 ORTHO05D009150 2.8e-123 446.0 393 61.8
VMungo0331G1697 Vigna mungo HOM05D007236 ORTHO05D009150 2.4e-122 443.0 378 63.5
FAN05G3464 Fragaria x ananassa HOM05D007236 ORTHO05D009150 4.5e-121 438.7 432 56.5
Psat7g265040 Pisum sativum HOM05D007236 ORTHO05D009150 5.9e-121 438.3 381 61.7
Actinidia31123 Actinidia chinensis HOM05D007236 ORTHO05D009150 5.0e-120 435.3 407 58.7
PGR031G2337 Punica granatum HOM05D007236 ORTHO05D009150 8.6e-120 434.5 384 58.1
Hund05669 Selenicereus undatus HOM05D007236 ORTHO05D009150 2.5e-119 433.0 379 60.7
arahy.Tifrunner.gnm1.ann1.I3AU87 Arachis hypogaea HOM05D007236 ORTHO05D009150 5.5e-119 431.8 380 63.7
Glyma.07G001600 Glycine max HOM05D007236 ORTHO05D009150 1.2e-118 430.6 382 61.0
CsaV3_3G030460 Cucumis sativus L. HOM05D007236 ORTHO05D009150 1.4e-117 427.2 390 56.9
MELO3C026715.2 Cucumis melo HOM05D007236 ORTHO05D009150 4.0e-117 425.6 372 57.5
Nn5g27081 Nelumbo nucifera HOM05D007236 ORTHO05D009150 9.8e-116 421.0 381 60.4
Ca_20979_v3 Cicer arietinum L. HOM05D007236 ORTHO05D009150 8.3e-115 417.9 319 67.4
arahy.Tifrunner.gnm1.ann1.QM8PPU Arachis hypogaea HOM05D007236 ORTHO05D009150 1.8e-114 416.8 408 58.8
COL.COLO4_31136 Corchorus olitorius HOM05D007236 ORTHO05D009150 4.1e-114 415.6 355 62.5
SGA_v2.0_scaffold71G23973 Striga asiatica HOM05D007236 ORTHO05D009150 4.1e-114 415.6 366 60.7
Aqoxy5G00022 Aquilegia oxysepala HOM05D007236 ORTHO05D009150 7.8e-113 411.4 394 58.1
ClCG07G014680 Citrullus lanatus HOM05D007236 ORTHO05D009150 7.8e-113 411.4 349 61.0
HanXRQChr10g0311241 Helianthus annuus HOM05D007236 ORTHO05D009150 6.6e-112 408.3 379 58.3
Lsat_1_v5_gn_5_137160 Lactuca sativa HOM05D007236 ORTHO05D009150 4.3e-111 405.6 350 60.0
Sopen03g041760 Solanum pennellii HOM05D007236 ORTHO05D009150 2.1e-110 403.3 386 56.7
Solyc03g124030.4 Solanum lycopersicum HOM05D007236 ORTHO05D009150 4.7e-110 402.1 386 56.5
Medtr4g005300 Medicago truncatula HOM05D007236 ORTHO05D009150 8.0e-110 401.4 335 64.5
Sed0012172 Sechium edule HOM05D007236 ORTHO05D009150 5.2e-109 398.7 387 54.3
ECA234G1409 Erigeron canadensis HOM05D007236 ORTHO05D009150 1.5e-108 397.1 348 59.8
Cc04_g00020 Coffea canephora HOM05D007236 ORTHO05D009150 2.2e-107 393.3 345 58.8
TPR.G38815 Trifolium pratense HOM05D007236 ORTHO05D009150 1.2e-105 387.5 331 63.1
AUR62001326 Chenopodium quinoa HOM05D007236 ORTHO05D009150 3.9e-104 382.5 354 58.2
Zm00001eb305180 Zea mays HOM05D007236 ORTHO05D009150 1.1e-103 380.9 384 54.9
Oeu039939.2 Olea europaea HOM05D007236 ORTHO05D009150 5.6e-103 378.6 332 59.3
CDE05G3570 Ceratophyllum demersum HOM05D007236 ORTHO05D008204 1.8e-101 373.6 385 53.5
unitig_32.g11550 Utricularia gibba HOM05D007236 ORTHO05D009150 8.9e-101 371.3 382 51.8
DCAR_016079 Daucus carota HOM05D007236 ORTHO05D009150 2.9e-99 366.3 398 51.8
ATR0215G005 Amborella trichopoda HOM05D007236 ORTHO05D009150 3.6e-94 349.4 366 56.3
Gohir.D06G121200 Gossypium hirsutum HOM05D007236 ORTHO05D009150 8.9e-93 344.7 399 51.4
Migut.I01208 Erythranthe guttata HOM05D007236 ORTHO05D009150 1.2e-92 344.4 305 58.0
Sc12g0011240 Simmondsia chinensis HOM05D000518 ORTHO05D000737 1.2e-92 344.4 273 63.7
vmacro12583 Vaccinium macrocarpon HOM05D007236 ORTHO05D009150 2.9e-91 339.7 351 53.8
CiPaw.01G207800 Carya illinoinensis HOM05D007236 ORTHO05D009150 8.6e-88 328.2 310 59.0
SEGI_39602 Sequoiadendron giganteum HOM05D007236 ORTHO05D009150 8.1e-86 321.6 366 48.6
MSTRG.22498 Avicennia marina HOM05D007236 ORTHO05D009150 1.2e-81 307.8 373 47.5
Sc12g0011350 Simmondsia chinensis HOM05D007236 ORTHO05D009150 1.5e-79 300.8 244 62.7
Rhsim02G0000100 Rhododendron simsii HOM05D007236 ORTHO05D009150 1.9e-79 300.4 456 42.1
Peaxi162Scf00038g02668 Petunia axillaris HOM05D007236 ORTHO05D009150 3.1e-77 293.1 314 50.0
Lalb_Chr01g0011631 Lupinus albus HOM05D007236 ORTHO05D009150 1.2e-76 291.2 214 68.7
PSO170G4015 Papaver somniferum HOM05D007236 ORTHO05D009150 4.2e-74 282.7 394 44.7
PSO357G0009 Papaver somniferum HOM05D007236 ORTHO05D009150 4.6e-73 279.3 387 43.9
Ciclev10013942m.g Citrus clementina HOM05D007236 ORTHO05D009150 9.9e-68 261.5 186 71.0
Haze_16198 Corylus avellana HOM05D007236 ORTHO05D009150 1.7e-67 260.8 269 53.2
CAN.G790.6 Capsicum annuum HOM05D007236 ORTHO05D009150 3.8e-67 259.6 200 65.5
FAN02G2413 Fragaria x ananassa HOM05D007236 ORTHO05D009150 3.5e-65 253.1 296 49.7
SMO117G0135 Selaginella moellendorffii HOM05D007236 ORTHO05D009150 3.0e-64 250.0 324 43.8
Pp3c5_19050 Physcomitrium patens HOM05D007236 ORTHO05D009150 3.9e-64 249.6 368 42.9
Lj9A543T71 Lonicera japonica HOM05D007236 ORTHO05D009150 2.8e-62 243.4 186 67.2
Mapoly0075s0045 Marchantia polymorpha HOM05D007236 ORTHO05D009150 2.2e-59 233.8 370 38.4
EL10Ac7g18131 Beta vulgaris HOM05D007236 ORTHO05D009150 1.2e-57 228.0 263 50.6
AagrBONN_evm.TU.Sc2ySwM_117.3884 Anthoceros agrestis HOM05D007236 ORTHO05D009150 1.8e-56 224.2 339 38.9
Atru.chr1.2627 Acer truncatum HOM05D007236 ORTHO05D009150 2.4e-45 187.2 140 69.3
Cpa.g.sc176.15 Carica papaya HOM05D007236 ORTHO05D009150 2.4e-45 187.2 216 50.9
Ciclev10013945m.g Citrus clementina HOM05D007236 ORTHO05D009150 5.5e-34 149.4 118 66.1
Atru.chr1.2630 Acer truncatum HOM05D007236 ORTHO05D009150 3.6e-33 146.7 124 62.1
Nitab4.5_0000499g0120 Nicotiana tabacum HOM05D007236 ORTHO05D009150 3.6e-33 146.7 111 64.0
Lj9A543T70 Lonicera japonica HOM05D007236 ORTHO05D009150 1.8e-29 134.4 99 65.7
CANSAT01G0299 Cannabis sativa HOM05D007236 ORTHO05D009150 1.0e-27 128.6 110 59.1
PRCOL_00005889 Prasinoderma coloniale HOM05D007236 ORTHO05D009150 1.3e-27 128.3 237 35.4
Os07g0287100 Oryza sativa ssp. japonica HOM05D007236 ORTHO05D009150 1.9e-26 124.4 162 49.4
Cre12.g554103 Chlamydomonas reinhardtii HOM05D007236 ORTHO05D009150 1.8e-24 117.9 346 28.0
CSS0013667 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 3.7e-22 110.2 81 67.9
CSS0007704 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 6.3e-22 109.4 99 59.6
Haze_16199 Corylus avellana HOM05D007236 ORTHO05D009150 3.2e-18 97.1 120 49.2
MCO09G516 Micromonas commoda HOM05D007236 ORTHO05D009150 1.3e-14 85.1 274 27.0
Aa31sc24G50 Aethionema arabicum HOM05D002308 ORTHO05D002535 8.2e-14 82.4 225 30.7
Nitab4.5_0000499g0130 Nicotiana tabacum HOM05D007236 ORTHO05D009150 2.6e-07 60.8 47 59.6


User provided reference genes

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