Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 3.2e-84 315.1 165 100.0
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 2.1e-83 312.4 165 98.2
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 7.0e-79 297.4 165 93.3
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.6e-78 296.2 165 92.7
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 2.0e-78 295.8 166 94.6
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 3.8e-77 291.6 165 91.5
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 1.9e-76 289.3 165 90.9
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 3.6e-75 285.0 165 87.3
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 3.0e-74 282.0 165 90.3
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 2.0e-73 279.3 166 88.6
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 2.0e-73 279.3 166 89.2
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 2.0e-73 279.3 166 88.6
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 3.4e-73 278.5 166 88.6
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 4.4e-73 278.1 166 89.2
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 5.6e-68 261.2 163 82.2
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 3.6e-67 258.5 163 84.7
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 5.7e-65 251.1 157 84.7
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 6.4e-64 247.7 159 79.9
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 3.2e-63 245.4 157 83.4
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 4.1e-63 245.0 160 83.1
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 4.1e-63 245.0 160 83.1
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 5.4e-63 244.6 157 84.1
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 9.2e-63 243.8 160 83.1
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.6e-62 243.0 154 85.1
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 2.8e-59 232.3 160 73.8
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 4.7e-59 231.5 160 75.6
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 1.8e-58 229.6 158 74.7
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 2.3e-58 229.2 161 74.5
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 2.3e-58 229.2 145 81.4
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 2.3e-58 229.2 145 81.4
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 4.0e-58 228.4 161 74.5
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 4.0e-58 228.4 160 73.8
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 1.2e-57 226.9 165 73.9
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 1.5e-57 226.5 155 76.1
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 3.4e-57 225.3 165 72.1
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 9.8e-57 223.8 143 79.7
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 1.7e-56 223.0 151 76.2
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 4.9e-56 221.5 145 77.2
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 4.9e-56 221.5 165 72.7
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 4.9e-56 221.5 166 71.1
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 8.3e-56 220.7 144 77.1
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 1.1e-55 220.3 153 75.2
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 3.2e-55 218.8 144 75.0
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 5.4e-55 218.0 152 73.7
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 7.0e-55 217.6 161 70.8
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 7.0e-55 217.6 166 69.9
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 7.0e-55 217.6 166 69.9
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 7.0e-55 217.6 158 73.4
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 1.2e-54 216.9 158 70.9
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 1.2e-54 216.9 161 69.6
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.6e-54 216.5 166 70.5
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 2.0e-54 216.1 145 75.2
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 2.7e-54 215.7 164 68.9
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 2.7e-54 215.7 151 73.5
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 2.7e-54 215.7 145 76.6
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 4.6e-54 214.9 161 69.6
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 4.6e-54 214.9 145 73.1
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 4.6e-54 214.9 144 77.1
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 6.0e-54 214.5 146 77.4
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 7.8e-54 214.2 154 72.1
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 7.8e-54 214.2 160 70.0
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 2.3e-53 212.6 136 78.7
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 3.0e-53 212.2 143 73.4
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 1.1e-52 210.3 142 76.1
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 1.5e-52 209.9 141 75.9
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 3.3e-52 208.8 130 86.9
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 4.3e-52 208.4 157 70.7
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 5.6e-52 208.0 145 73.1
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 7.3e-52 207.6 130 86.9
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 2.8e-51 205.7 143 74.1
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 2.8e-51 205.7 145 72.4
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 2.8e-51 205.7 139 75.5
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 4.7e-51 204.9 142 72.5
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 1.1e-50 203.8 156 70.5
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 1.4e-50 203.4 145 71.7
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 3.1e-50 202.2 195 60.0
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 4.0e-50 201.8 146 70.5
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 4.0e-50 201.8 137 75.9
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 6.8e-50 201.1 139 72.7
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 8.9e-50 200.7 154 65.6
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 8.9e-50 200.7 165 63.0
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.2e-49 200.3 138 71.7
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 1.2e-49 200.3 149 69.8
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 2.0e-49 199.5 141 73.0
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 3.4e-49 198.7 141 73.0
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 4.4e-49 198.4 144 70.8
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 4.4e-49 198.4 145 69.7
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 4.4e-49 198.4 192 59.4
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 4.4e-49 198.4 141 73.0
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 9.8e-49 197.2 155 65.8
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 9.8e-49 197.2 141 72.3
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 1.7e-48 196.4 154 63.6
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 2.2e-48 196.1 144 70.1
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 3.7e-48 195.3 152 69.1
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 1.1e-47 193.7 149 70.5
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 1.4e-47 193.4 143 68.5
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 2.4e-47 192.6 125 78.4
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 2.4e-47 192.6 138 69.6
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 7.1e-47 191.0 145 69.0
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 9.2e-47 190.7 136 71.3
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 2.1e-46 189.5 124 78.2
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 6.0e-46 188.0 138 70.3
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.5e-44 182.6 134 70.1
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 2.1e-43 179.5 172 57.6
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 2.8e-43 179.1 103 91.3
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 4.7e-43 178.3 129 70.5
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 5.8e-41 171.4 138 63.8
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 2.4e-39 166.0 109 78.9
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 4.1e-39 165.2 108 78.7
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 1.6e-38 163.3 136 62.5
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 6.0e-38 161.4 99 83.8
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 3.0e-37 159.1 101 78.2
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 6.6e-37 157.9 103 75.7
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 6.6e-37 157.9 104 80.8
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 5.6e-36 154.8 104 78.8
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 6.2e-35 151.4 104 73.1
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 4.4e-33 145.2 117 61.5
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 1.4e-31 140.2 118 61.9
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 3.5e-30 135.6 128 52.3
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 6.0e-30 134.8 138 52.9
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 8.7e-29 131.0 94 71.3
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 1.5e-28 130.2 79 81.0
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 9.6e-28 127.5 84 76.2
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 3.6e-27 125.6 93 67.7
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 6.9e-26 121.3 113 61.1
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 2.9e-24 115.9 74 78.4
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 7.4e-20 101.3 127 52.0
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 5.8e-17 91.7 121 43.0
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 8.4e-16 87.8 55 78.2
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 3.2e-15 85.9 121 43.0
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 2.7e-14 82.8 66 63.6
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 6.0e-14 81.6 132 38.6
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 3.7e-11 72.4 54 64.8
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 4.0e-10 68.9 52 71.2
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 4.0e-10 68.9 52 71.2
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 5.8e-09 65.1 52 61.5
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 2.5e-07 59.7 42 69.0
C08p44260 Brassica napus HOM05D005569 ORTHO05D007052 3.5e-06 55.8 39 76.9
BolC8t51972H Brassica oleracea HOM05D005569 ORTHO05D000015 3.5e-06 55.8 36 77.8


User provided reference genes

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