Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 2.5e-262 908.3 474 100.0
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 3.4e-235 818.1 482 89.8
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 4.9e-218 761.1 481 81.1
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 6.5e-194 681.0 480 75.4
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 1.0e-191 673.7 479 72.9
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 8.7e-191 670.6 473 74.2
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 6.3e-165 584.7 472 65.7
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 7.7e-163 577.8 472 65.0
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 2.5e-161 572.8 477 62.3
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 7.2e-161 571.2 473 67.2
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 2.1e-160 569.7 473 66.8
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 9.4e-153 544.3 479 63.0
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 2.6e-134 483.0 472 58.1
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 3.3e-81 306.6 317 54.9
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 1.1e-65 255.0 509 35.6
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 3.7e-64 250.0 513 33.3
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 9.4e-60 235.3 526 31.6
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 1.3e-56 224.9 596 32.4
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 5.2e-50 203.0 578 31.3
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 5.2e-50 203.0 553 33.1
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 5.7e-49 199.5 559 30.8
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 1.4e-47 194.9 549 31.0
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 1.2e-46 191.8 561 29.4
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 1.1e-44 185.3 502 29.1
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 1.1e-44 185.3 550 31.5
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 7.2e-44 182.6 441 34.2
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 2.1e-43 181.0 469 30.5
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 2.1e-43 181.0 577 30.5
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 3.6e-43 180.3 389 33.9
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 1.8e-42 177.9 541 31.8
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 2.3e-42 177.6 401 33.4
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 1.5e-41 174.9 576 28.0
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 2.4e-39 167.5 428 32.5
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 4.1e-39 166.8 415 33.0
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 2.0e-38 164.5 565 27.6
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 4.5e-38 163.3 551 29.2
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 9.4e-36 155.6 257 40.5
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 1.2e-35 155.2 343 32.4
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 2.1e-35 154.5 361 42.4
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 4.7e-35 153.3 260 38.5
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 4.7e-35 153.3 260 38.5
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 2.3e-34 151.0 642 29.0
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 3.0e-34 150.6 396 32.8
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 3.0e-34 150.6 268 42.9
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 5.2e-34 149.8 279 34.1
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 4.4e-33 146.7 327 37.6
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 2.8e-32 144.1 365 32.9
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 3.7e-32 143.7 256 35.9
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 3.7e-32 143.7 268 40.7
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 4.8e-32 143.3 265 38.5
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 1.4e-31 141.7 267 40.8
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 1.4e-31 141.7 353 34.6
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 1.8e-31 141.4 262 37.4
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 1.6e-30 138.3 263 33.1
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 2.0e-30 137.9 273 32.2
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 4.5e-30 136.7 262 33.6
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 1.0e-29 135.6 291 39.5
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 1.3e-29 135.2 334 34.4
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 2.3e-29 134.4 308 34.7
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 8.6e-29 132.5 371 31.3
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 2.5e-28 131.0 261 39.8
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 2.5e-28 131.0 264 33.7
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 4.2e-28 130.2 356 30.3
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 4.2e-28 130.2 261 39.5
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 5.5e-28 129.8 268 39.2
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 1.6e-27 128.3 265 36.2
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 1.6e-27 128.3 247 35.2
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 6.1e-27 126.3 366 32.2
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 3.0e-26 124.0 272 31.6
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 3.0e-26 124.0 325 31.1
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 3.0e-26 124.0 294 32.0
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 6.8e-26 122.9 177 42.9
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 3.4e-25 120.6 348 31.9
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 1.3e-24 118.6 177 45.8
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 1.3e-24 118.6 256 36.3
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 1.7e-24 118.2 291 29.2
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 2.8e-24 117.5 361 32.1
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 6.3e-24 116.3 288 36.5
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 1.1e-23 115.5 185 39.5
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 1.1e-23 115.5 268 35.4
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 1.4e-23 115.2 217 39.2
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 3.1e-23 114.0 370 31.6
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 5.4e-23 113.2 259 35.9
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 9.2e-23 112.5 260 37.3
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 5.9e-22 109.8 187 39.6
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 1.0e-21 109.0 203 35.5
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 1.7e-21 108.2 310 33.2
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 2.3e-21 107.8 250 31.2
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 6.6e-21 106.3 281 27.0
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 1.1e-20 105.5 165 42.4
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 4.3e-20 103.6 186 40.3
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 5.6e-20 103.2 230 40.0
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 5.6e-20 103.2 322 30.7
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.6e-19 101.7 187 34.8
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 2.1e-19 101.3 246 36.6
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 2.8e-19 100.9 258 34.1
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 4.7e-19 100.1 217 30.9
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 8.0e-19 99.4 189 38.6
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 1.4e-18 98.6 191 37.7
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 3.1e-18 97.4 168 38.7
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 5.2e-18 96.7 191 36.1
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 6.8e-18 96.3 309 32.7
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 1.5e-17 95.1 220 33.2
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 2.6e-17 94.4 338 27.5
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 4.4e-17 93.6 273 30.4
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 4.9e-16 90.1 293 30.4
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 6.4e-16 89.7 142 45.8
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.1e-15 89.0 182 33.5
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 3.2e-15 87.4 119 40.3
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 3.2e-15 87.4 147 39.5
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 2.0e-14 84.7 75 48.0
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 3.9e-13 80.5 83 42.2
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 3.9e-13 80.5 182 34.6
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.9e-12 78.2 270 25.9
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 7.3e-12 76.3 152 32.9
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 9.5e-12 75.9 212 37.7
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 4.0e-10 70.5 99 41.4
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 4.4e-09 67.0 74 48.6
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 7.5e-09 66.2 84 34.5
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 1.7e-08 65.1 106 34.0
Lj1P829T26 Lonicera japonica HOM05D006067 ORTHO05D007327 2.9e-08 64.3 133 35.3
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 3.7e-08 63.9 117 29.9
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 2.4e-07 61.2 81 34.6
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 3.2e-07 60.8 278 25.2
Sabra08G0016500 Salix brachista HOM05D002310 ORTHO05D002326 4.1e-07 60.5 83 31.3
FAN17G0990 Fragaria x ananassa HOM05D002310 ORTHO05D002326 2.1e-06 58.2 90 31.1
FvH4_4g15540 Fragaria vesca HOM05D002310 ORTHO05D002326 3.5e-06 57.4 90 31.1
FAN12G2432 Fragaria x ananassa HOM05D002310 ORTHO05D002326 3.5e-06 57.4 90 31.1
RcHm_v2.0_Chr4g0416221 Rosa chinensis HOM05D002310 ORTHO05D002326 6.0e-06 56.6 90 31.1
FAN07G0096 Fragaria x ananassa HOM05D002310 ORTHO05D002326 7.8e-06 56.2 90 31.1
Lj5g0003431 Lotus japonicus HOM05D002310 ORTHO05D002326 7.8e-06 56.2 90 28.9


User provided reference genes

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