Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 0.0e+00 1104.7 544 100.0
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 3.1e-309 1064.3 544 96.5
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 3.4e-308 1060.8 544 95.8
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 8.5e-307 1056.2 545 95.2
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 8.5e-307 1056.2 545 95.2
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 7.2e-306 1053.1 545 95.0
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 1.4e-304 1048.9 545 94.9
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 3.9e-304 1047.3 545 94.9
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 2.8e-302 1041.2 545 94.5
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 7.7e-300 1033.1 543 93.7
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 3.2e-298 1027.7 545 93.0
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 3.6e-297 1024.2 545 92.8
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 1.8e-277 958.7 543 87.3
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 1.5e-271 939.1 543 83.8
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 2.0e-271 938.7 543 84.5
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 2.0e-271 938.7 544 84.7
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 1.1e-266 922.9 543 82.1
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 8.0e-265 916.8 543 82.3
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 1.8e-264 915.6 546 82.2
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 5.2e-264 914.1 546 82.1
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.5e-263 912.5 543 82.5
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 5.8e-263 910.6 543 82.7
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 6.4e-262 907.1 546 81.7
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 5.4e-261 904.0 543 81.0
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 1.6e-260 902.5 543 81.6
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 3.5e-260 901.4 543 81.6
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 3.5e-260 901.4 536 83.0
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 2.5e-258 895.2 543 81.2
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 9.5e-258 893.3 543 81.2
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 9.5e-258 893.3 543 80.8
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 2.8e-257 891.7 543 80.7
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 8.9e-256 886.7 543 79.2
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 8.9e-256 886.7 543 79.4
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 8.9e-256 886.7 543 79.4
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 3.4e-255 884.8 581 76.9
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 1.3e-254 882.9 542 79.9
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 1.7e-254 882.5 543 80.3
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 4.9e-254 880.9 533 79.9
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 6.4e-254 880.6 603 73.1
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 8.3e-254 880.2 603 73.0
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.6e-252 875.9 543 80.1
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 6.0e-252 874.0 537 79.5
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 7.8e-252 873.6 543 80.1
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 1.3e-251 872.8 543 79.6
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 5.6e-250 867.5 538 78.4
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 5.6e-250 867.5 544 78.9
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 1.6e-249 865.9 540 79.1
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 3.6e-249 864.8 543 77.2
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 3.4e-247 858.2 565 76.3
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 1.3e-246 856.3 547 78.4
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 4.9e-246 854.4 541 77.3
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 2.4e-245 852.0 543 78.3
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 2.4e-245 852.0 540 78.3
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 2.4e-245 852.0 543 77.9
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 3.5e-244 848.2 536 77.4
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 4.6e-244 847.8 544 77.9
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 7.8e-244 847.0 538 78.4
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 1.0e-243 846.7 536 77.4
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 1.1e-242 843.2 533 78.4
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 2.5e-242 842.0 538 77.3
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 3.3e-242 841.6 541 76.5
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 5.6e-242 840.9 634 68.6
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 1.2e-241 839.7 576 72.7
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 3.6e-241 838.2 556 75.2
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 6.2e-241 837.4 537 77.5
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 8.1e-241 837.0 545 77.2
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 4.0e-240 834.7 537 75.0
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 1.5e-239 832.8 541 75.0
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 7.6e-239 830.5 539 77.2
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 3.2e-237 825.1 540 74.4
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 5.4e-237 824.3 541 74.3
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 5.4e-237 824.3 544 74.8
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.6e-236 822.8 541 74.7
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.3e-235 819.7 541 74.5
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 3.1e-232 808.5 535 75.7
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 4.0e-232 808.1 536 74.6
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 1.3e-230 803.1 543 75.7
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 6.4e-230 800.8 599 68.6
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 7.8e-228 793.9 533 72.0
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 3.0e-227 792.0 440 89.3
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 6.6e-227 790.8 545 73.8
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 4.2e-221 771.5 542 72.1
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 5.4e-221 771.2 533 70.4
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 1.6e-220 769.6 544 73.5
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 6.7e-219 764.2 544 72.1
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 9.9e-215 750.4 550 70.4
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 9.9e-215 750.4 524 71.9
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 1.7e-214 749.6 533 72.4
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 5.3e-208 728.0 560 67.9
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 7.9e-204 714.1 579 63.6
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 5.7e-202 708.0 453 76.6
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 1.8e-200 703.0 759 52.2
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 1.0e-195 687.2 539 66.6
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 5.9e-191 671.4 540 65.2
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 9.7e-186 654.1 538 65.8
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 2.8e-185 652.5 537 58.8
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 5.3e-184 648.3 537 58.8
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 2.6e-183 646.0 400 79.0
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 3.9e-179 632.1 376 82.7
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 8.8e-179 630.9 377 83.0
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 1.8e-168 596.7 369 78.3
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 5.0e-166 588.6 529 54.6
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 4.1e-152 542.3 497 53.5
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 5.4e-152 542.0 371 70.1
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 9.5e-149 531.2 387 71.1
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 5.1e-134 482.3 342 66.7
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 2.6e-130 469.9 490 52.7
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 1.6e-127 460.7 275 80.4
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 8.7e-118 428.3 628 39.5
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 2.1e-116 423.7 268 80.6
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 1.6e-111 407.5 375 61.6
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 5.4e-104 382.5 323 66.6
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 4.2e-96 356.3 225 76.4
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 2.4e-91 340.5 272 65.4
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 1.6e-79 301.2 404 41.6
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 5.7e-77 292.7 239 63.2
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 2.2e-73 280.8 544 33.1
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 1.7e-68 264.6 601 30.1
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 1.7e-68 264.6 181 69.1
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 7.0e-67 259.2 139 93.5
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 2.6e-66 257.3 154 84.4
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 2.5e-64 250.8 158 77.2
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 3.2e-64 250.4 170 72.4
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 4.7e-63 246.5 187 72.2
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 5.2e-62 243.0 243 55.1
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 2.0e-61 241.1 141 79.4
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 1.7e-60 238.0 152 76.3
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 5.2e-54 216.5 152 75.0
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 8.8e-54 215.7 271 42.1
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 2.0e-53 214.5 193 58.5
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 9.8e-53 212.2 152 73.0
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 1.7e-52 211.5 137 73.7
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 1.8e-51 208.0 819 22.8
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 1.7e-49 201.4 165 58.2
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 9.8e-45 185.7 109 84.4
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 1.0e-38 165.6 119 65.5
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 3.2e-35 154.1 85 89.4
Rhsim12G0175500 Rhododendron simsii HOM05D005139 ORTHO05D006125 3.7e-20 104.0 112 49.1
Rhsim02G0051300 Rhododendron simsii HOM05D005139 ORTHO05D006125 9.2e-19 99.4 78 60.3
CBR_g34498 Chara braunii HOM05D003088 ORTHO05D006665 1.6e-15 88.6 75 58.7
SEGI_13361 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 1.6e-15 88.6 66 63.6
Rhsim08G0243300 Rhododendron simsii HOM05D005139 ORTHO05D006125 3.4e-13 80.9 45 71.1
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 1.7e-09 68.6 53 62.3
Carub.0002s1494 Capsella rubella HOM05D001168 ORTHO05D001044 1.1e-06 59.3 44 72.7
Lj1g0027048 Lotus japonicus HOM05D005920 ORTHO05D007211 6.8e-06 56.6 84 40.5


User provided reference genes

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