Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 0.0e+00 1227.6 610 100.0
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 0.0e+00 1162.9 612 93.6
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 2.0e-309 1065.1 612 85.9
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 4.4e-296 1020.8 610 83.8
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 1.9e-291 1005.4 622 82.0
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 6.6e-284 980.3 611 82.5
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 9.3e-262 906.7 639 73.7
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 1.5e-251 872.8 643 72.0
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 1.1e-249 866.7 633 72.0
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 8.5e-239 830.5 628 69.3
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 2.5e-238 828.9 634 69.6
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 1.5e-232 809.7 656 65.9
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 5.0e-231 804.7 596 70.5
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 6.3e-226 787.7 634 65.8
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 5.9e-224 781.2 633 64.9
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 5.0e-223 778.1 636 65.1
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 1.1e-222 776.9 633 65.2
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 1.7e-218 763.1 664 62.2
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 3.7e-218 761.9 581 68.5
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 1.2e-216 756.9 594 66.7
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 9.5e-206 720.7 605 61.5
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 3.2e-185 652.5 558 63.3
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 6.6e-183 644.8 662 52.1
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 3.3e-182 642.5 650 53.7
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 5.6e-182 641.7 662 51.7
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 1.1e-180 637.5 652 52.1
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 1.8e-180 636.7 661 52.0
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 5.2e-180 635.2 661 51.3
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 2.9e-178 629.4 665 52.0
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 4.9e-178 628.6 658 52.7
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 3.2e-177 625.9 646 52.6
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 2.7e-176 622.9 623 52.6
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 4.6e-176 622.1 640 53.0
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 1.3e-175 620.5 656 52.1
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 1.7e-175 620.2 659 50.1
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 1.1e-174 617.5 653 52.1
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 2.5e-174 616.3 653 52.4
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 3.3e-174 615.9 648 51.5
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 2.8e-173 612.8 642 50.9
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 4.7e-173 612.1 653 52.2
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 8.9e-172 607.8 664 50.2
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.7e-170 603.6 654 50.0
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 2.2e-170 603.2 509 65.2
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 4.2e-169 599.0 659 51.3
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 1.7e-167 593.6 657 50.5
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 1.7e-167 593.6 659 48.9
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 1.4e-164 583.9 635 49.6
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 1.4e-164 583.9 614 51.3
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 5.3e-164 582.0 651 50.7
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 9.0e-164 581.3 662 48.8
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 5.8e-163 578.6 649 49.3
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 7.6e-163 578.2 659 50.1
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 1.3e-162 577.4 663 48.4
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 2.9e-162 576.2 651 48.5
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 9.3e-161 571.2 645 47.8
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 9.3e-161 571.2 645 47.9
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 3.5e-160 569.3 652 49.8
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 7.9e-160 568.2 657 48.6
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 1.0e-159 567.8 659 48.1
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.1e-157 560.1 629 48.8
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 1.4e-156 557.4 649 50.2
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 9.0e-156 554.7 646 50.2
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 1.5e-155 553.9 652 46.2
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 2.0e-155 553.5 653 47.6
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 4.9e-154 548.9 656 46.5
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 6.4e-154 548.5 639 47.6
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 8.4e-154 548.1 650 47.5
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 2.4e-153 546.6 672 48.4
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 1.0e-151 541.2 658 47.3
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 2.3e-151 540.0 649 47.0
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 4.3e-150 535.8 655 46.0
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 5.6e-150 535.4 667 45.4
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 1.6e-149 533.9 648 44.8
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 6.9e-148 528.5 655 44.0
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 1.5e-147 527.3 655 44.0
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 2.0e-147 526.9 679 44.8
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.6e-147 526.6 639 46.0
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 7.6e-147 525.0 695 45.0
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 4.9e-146 522.3 637 48.5
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 6.5e-146 521.9 648 44.6
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.6e-144 517.3 629 45.9
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 2.3e-143 513.5 646 44.7
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 1.3e-141 507.7 656 46.3
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 3.7e-141 506.1 645 45.7
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 5.8e-139 498.8 630 43.2
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 1.1e-137 494.6 615 46.8
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 2.5e-137 493.4 637 43.0
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 3.2e-137 493.0 622 44.2
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 6.1e-136 488.8 661 42.7
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 1.6e-133 480.7 655 44.4
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 3.7e-133 479.6 749 37.8
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.7e-130 470.7 658 40.7
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 1.7e-130 470.7 638 42.2
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 3.8e-130 469.5 650 42.0
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 1.5e-123 447.6 658 41.5
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 3.8e-122 443.0 633 41.7
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 1.9e-121 440.7 661 39.5
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 4.2e-121 439.5 360 63.6
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 1.4e-108 397.9 728 35.6
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 2.3e-103 380.6 720 35.1
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 5.2e-103 379.4 614 36.8
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.1e-100 371.7 595 38.3
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 9.1e-100 368.6 645 36.3
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 4.7e-96 356.3 698 35.0
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 9.8e-94 348.6 281 59.4
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 1.3e-93 348.2 456 45.6
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 1.0e-90 338.6 257 63.0
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 1.7e-90 337.8 531 37.5
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 1.3e-85 321.6 467 43.7
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 1.7e-85 321.2 467 43.5
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 1.8e-84 317.8 367 46.6
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.1e-81 308.5 478 42.9
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 2.1e-80 304.3 715 29.8
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 3.2e-76 290.4 222 63.5
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.3e-74 285.0 429 40.6
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.2e-72 278.5 367 43.9
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 2.6e-62 244.2 264 45.1
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 4.4e-62 243.4 477 35.2
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 2.4e-44 184.5 275 37.8
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 2.4e-44 184.5 238 45.8
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 7.9e-43 179.5 121 66.1
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 3.2e-20 104.4 103 57.3
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 1.2e-19 102.4 155 41.3
A08p10430 Brassica napus HOM05D005685 ORTHO05D007046 7.4e-17 93.2 97 54.6
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 5.0e-13 80.5 215 34.4
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 9.4e-12 76.3 132 42.4
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 4.6e-11 73.9 125 42.4
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 4.6e-11 73.9 127 37.0
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 7.9e-11 73.2 199 34.7
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 2.2e-08 65.1 79 46.8
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 2.2e-08 65.1 72 51.4


User provided reference genes

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